mRNA_H-paniculata_contig12253.1434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12253.1434.1
Unique NamemRNA_H-paniculata_contig12253.1434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: D8LMV2_ECTSI (GSH-dependent dehydroascorbate reductase, monomeric enzymes catalyzing the reduction of DHA into asc n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV2_ECTSI)

HSP 1 Score: 415 bits (1066), Expect = 2.070e-140
Identity = 203/300 (67.67%), Postives = 246/300 (82.00%), Query Frame = 3 
Query:    6 TQVSGRSVVRRGSDLSMRTSPRFIVSKKARDEIIDGDGPTTITVDMKSGDIIKEVTSQKDMRAKLEKETPTAGPGLITPNMELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLSLKDDPDKMDKAKEVTKGVFGAVAKCVKNLEAANDPDLVSAVMAELKKVDAHLEATKGPFLTGEQMTLADCSFAPKLYHASTCLAHFKNTVIPPELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKARGTEAK 905
            + V  R+V RRG DLSMR + +F++SKKA   + D  GPT+ITV+MKSG++IKE     + +   ++E   AGPGL+ P+MELFCKAAADG+ALGDCPFTHY+ MVL+YK LPFKLTP APD KP+WLVE+Y+GQMPCLVD+ EAYTES  +V Y+EYFYPEPTLS+KD  D + KAKEVT GVFG++AKC+KNL    DP L++  MAELKKVDA L+  KGP+L GE++TLADCSFAPKLYHASTCLAHFKNTVI P+LESLHKYMD IYSH+AF KS+YPPD++VWGWN ARGT+AK
Sbjct:   40 SSVRHRAVARRG-DLSMRKTGKFVLSKKA---LNDDSGPTSITVNMKSGEMIKE-----EKKEAPKEEMAKAGPGLLEPDMELFCKAAADGNALGDCPFTHYVHMVLQYKGLPFKLTPVAPDAKPDWLVEDYEGQMPCLVDSKEAYTESANIVDYVEYFYPEPTLSIKDS-DAVAKAKEVTSGVFGSLAKCIKNLNPKEDPMLIADAMAELKKVDAFLKKGKGPYLCGEELTLADCSFAPKLYHASTCLAHFKNTVISPDLESLHKYMDAIYSHEAFTKSSYPPDVIVWGWNNARGTQAK 329
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BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: A0A835ZA14_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA14_9STRA)

HSP 1 Score: 313 bits (803), Expect = 1.030e-100
Identity = 157/280 (56.07%), Postives = 199/280 (71.07%), Query Frame = 3 
Query:   69 RFIVSKKARDEIIDGDGPTTITVDMKSGDIIKEVTSQKDMRAKLEKETPTAGPGLI-TPNMELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLSLKDDPDKMDKAKEVTKGVFGAVAKCVKNLEAANDPDLVSAVMAELKKVDAHLEATKGPFLTGEQMTLADCSFAPKLYHASTCLAHFKNTVIPPELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKARGTEAK 905
            +F +S KA+   I  DG   I +++K+G I K+   +   +AK         PG +    MEL+CKA  D  +LGDCPFTHY  MVLRYK LP  L PCAPD KP+WLVE+++G+MPCLV +GEAYTES E+V YIEYF+PEPTLS +    +M +A E T G+F  +A+CVKNL+AA D ++V A+ +ELK VDA L    GPFL G+ +TLADCSFAPKLYH  T LA FKNT+I P+  +LHKYMD I++H AFV+S+YPPD+VVWGWN ARGT AK
Sbjct:   61 KFKISPKAQ---ILADG--VIEMNVKTGQITKDAPKEVKNQAK---------PGSVEVGTMELYCKAGPDSKSLGDCPFTHYAHMVLRYKGLPVTLVPCAPDAKPDWLVEDHEGKMPCLVHDGEAYTESSEIVRYIEYFFPEPTLSPQGASAQMAEAMEATSGLFPLMARCVKNLDAAQDAEMVRAIESELKGVDALLRKNGGPFLCGKDLTLADCSFAPKLYHTKTALAQFKNTIINPDFAALHKYMDTIFAHPAFVESSYPPDVVVWGWNSARGTSAK 326
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BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: A0A4D9D9T1_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9T1_9STRA)

HSP 1 Score: 250 bits (638), Expect = 4.830e-77
Identity = 116/217 (53.46%), Postives = 155/217 (71.43%), Query Frame = 3 
Query:  246 MELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYP-EPTLSLKDD-PDKMDKAKEVTKGVFGAVAKCVKNLEAANDPDLVSAVMAELKKVDAHLEATKGPFLTGEQMTLADCSFAPKLYHASTCLAHFKNTVIPPELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKAR 890
            +EL CKA  DG+ALGDCPF HY+QMVLRYK L ++L P  P+ KPEWLVE Y G+MPCLV + EAYT+S  +  Y+EYF+P E  L+++D+ P+  ++ K  T GVFGA A+ +KN++   DP L +A+  EL KVD+ L+ TKGPFL GE++TL D + APKLYH    +AHFKN +IPP L +L  YM  ++  D F +S+YPPD++ WGW  AR
Sbjct:   31 IELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDEKPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALFEELDKVDSFLQTTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHMFDMDIFQESSYPPDVITWGWGNAR 247
[Close]
BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: W7U001_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U001_9STRA)

HSP 1 Score: 250 bits (639), Expect = 2.990e-76
Identity = 117/217 (53.92%), Postives = 155/217 (71.43%), Query Frame = 3 
Query:  246 MELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYP-EPTLSLKDD-PDKMDKAKEVTKGVFGAVAKCVKNLEAANDPDLVSAVMAELKKVDAHLEATKGPFLTGEQMTLADCSFAPKLYHASTCLAHFKNTVIPPELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKAR 890
            +EL CKA  DG+ALGDCPF HY+QMVLRYK L ++L P  P+ KPEWLVE Y G+MPCLV + EAYT+S  +  Y+EYF+P E  L+++D+ P+  ++ K  T GVFGA A+ +KN++   DP L +A++ EL KVD  L+ TKGPFL GE++TL D + APKLYH    +AHFKN +IPP L +L  YM  I+  D F +S+YPPD++ WGW  AR
Sbjct:   99 IELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNAR 315
[Close]
BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: A0A7S2SR18_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR18_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.810e-65
Identity = 105/222 (47.30%), Postives = 142/222 (63.96%), Query Frame = 3 
Query:  246 MELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLSLKDDPDKMDKAKEVTKGVFGAVAKCVKNLEAANDPDLVSAVMAELKKVDAHLEA------TKGPFLTGEQMTLADCSFAPKLYHASTCLAHFKNTVIPPELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKARG 893
            + LF KA  DG ++GDCPF H ++MVL  K L + L+PCAPD KP+WLV+ YDG+MPCLV +GEAYTES  +V Y+ +F+ EP L+       M  A+E T   F A+AK +KN + + DPDL  A+  EL K+D HL+       T+  F+ G    ++DC+ APKLYH      HFKN  IP E  +L KY+  +++H AF K+ YP D+V+WGW  ARG
Sbjct:    6 LHLFVKAGPDGESVGDCPFAHSVRMVLEAKGLEYVLSPCAPDGKPQWLVDGYDGKMPCLVHDGEAYTESSHIVDYLNFFFQEPKLAAP-----MAAAQEATSQFFPALAKYLKNTDESADPDLREALETELTKIDMHLQDLQAQHDTEDLFIAGPTFGISDCALAPKLYHMDVAAKHFKNFQIPTECTALEKYLAKVFAHPAFAKTQYPEDVVLWGWGNARG 222
[Close]
BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: A0A7S2SQ66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ66_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.020e-64
Identity = 105/222 (47.30%), Postives = 142/222 (63.96%), Query Frame = 3 
Query:  246 MELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLSLKDDPDKMDKAKEVTKGVFGAVAKCVKNLEAANDPDLVSAVMAELKKVDAHLEA------TKGPFLTGEQMTLADCSFAPKLYHASTCLAHFKNTVIPPELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKARG 893
            + LF KA  DG ++GDCPF H ++MVL  K L + L+PCAPD KP+WLV+ YDG+MPCLV +GEAYTES  +V Y+ +F+ EP L+       M  A+E T   F A+AK +KN + + DPDL  A+  EL K+D HL+       T+  F+ G    ++DC+ APKLYH      HFKN  IP E  +L KY+  +++H AF K+ YP D+V+WGW  ARG
Sbjct:   69 LHLFVKAGPDGESVGDCPFAHSVRMVLEAKGLEYVLSPCAPDGKPQWLVDGYDGKMPCLVHDGEAYTESSHIVDYLNFFFQEPKLAAP-----MAAAQEATSQFFPALAKYLKNTDESADPDLREALETELTKIDMHLQDLQAQHDTEDLFIAGPTFGISDCALAPKLYHMDVAAKHFKNFQIPTECTALEKYLAKVFAHPAFAKTQYPEDVVLWGWGNARG 285
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BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: A0A7S3KYN6_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KYN6_9STRA)

HSP 1 Score: 191 bits (486), Expect = 5.440e-54
Identity = 95/246 (38.62%), Postives = 144/246 (58.54%), Query Frame = 3 
Query:  168 VTSQKDMRAKLEKETPTAGPGLITPNMELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLSLKDDPDKMDKAKEVTKGVFGAVAKCVKNLEA--ANDPDLVSAVMAELKKVDAHLEATKGPFLTGEQMTLADCSFAPKLYHASTCLAHFKNTVIP--PELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKARG 893
            +   + +  + E  TPT G       M L+ KA  DG ++GDCPF H+++MVL  K L ++L PC  DTKP WLVE YDG+MP L    E Y ESD +  Y+++F+ +P L +  D   M+ A+   +G+F A+AK +K+     A+D +  +A+   L+K+++HL A  GP++TG   +L DC  APKLYH  T +  FKN  I    +  ++  YM  ++   +F K+ YP +++ WGW  ARG
Sbjct:   44 MVKNRGLEVRREGATPTEG------GMTLYLKAGPDGKSVGDCPFAHFVRMVLEEKGLDYELQPCVADTKPAWLVEFYDGKMPALRHRKECYVESDVIAEYVDFFFRDPPLKV--DRPLMEAAETAVEGLFPAIAKYLKHTPDGDADDGEKKTALERSLEKLNSHLAAVDGPYMTGHSFSLVDCGLAPKLYHMKTGVNGFKNGAIDFATQFPAVDAYMTAVFDRPSFQKTAYPTEVITWGWGNARG 281
[Close]
BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: B7G1X6_PHATC (Glutathione dehydrogenase (ascorbate) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1X6_PHATC)

HSP 1 Score: 183 bits (464), Expect = 5.730e-51
Identity = 93/249 (37.35%), Postives = 151/249 (60.64%), Query Frame = 3 
Query:  168 VTSQKDMRAKLEKETPTAGPGLITPNMELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLSLKDDPDKMDKAKEVTKGVFGAVAKCVKNLEAANDPD--LVSAVMAELKKVDAHL--EATKGPFLTG--EQMTLADCSFAPKLYHASTCLAHFKNTVIP--PELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKAR 890
            +   + +  + E  TPT G       M L+ KAAADG+ +GDCPF H++++VL  K L ++L PC  DTKP WL E Y+G++P L    E Y ESD +  Y+++F+P+P  SLK    +MD+A++   G F +VAK +K++   +D D  +  ++ + L +++ HL  E   GP+L G  E++TL DCS +PKLYH  T +  FK+  I    +  ++++Y+D +   ++F K+ Y  D+++WGW+  R
Sbjct:   23 MVQNRGLEIRREGATPTEG------GMTLYLKAAADGTLVGDCPFAHFVRLVLEEKGLQYELKPCTEDTKPAWLTEYYEGKLPALRHRKECYVESDVIADYLDFFFPDP--SLKGGKKEMDEAEDAISGFFPSVAKYLKHIPDGDDEDQEMKCSLESVLLRLEEHLQLENRTGPYLVGNGEKLTLLDCSLSPKLYHLRTGIEAFKDNAIDLAQKFPAVNEYLDSMLKRESFQKTVYDKDVIIWGWSNTR 263
[Close]
BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: A0A6U5M7R9_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5M7R9_9STRA)

HSP 1 Score: 179 bits (453), Expect = 9.210e-50
Identity = 92/230 (40.00%), Postives = 137/230 (59.57%), Query Frame = 3 
Query:  228 GLITPNMELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLSLKDDPDKMDKAKEVTKGVFGAVAKCVKNLEAAN--DPDLVSAVMAELKKVDAHL--EATKGPFLTG--EQMTLADCSFAPKLYHASTCLAHFKNTV--IPPELESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKARG 893
            GL    M L+ KA  DG ++GDCPF  Y++MVL  K L + + P    TKP+WL+E Y+G+MP L    E Y ES+ +  Y++YF+ EP L++K    +   A+E   G F +VAK +K+    +  D +L   + A L +++AHL  E   GPFL G  E++ L DC+ APKLYH +  L  FK+    +  +  ++ KY+D +++ ++F KSTYP + V WGW  ARG
Sbjct:    5 GLDAGGMSLYLKAGPDGESVGDCPFAQYVRMVLEEKGLEYNVVPAVQATKPQWLIEFYEGKMPALRHRDECYVESEVIATYLDYFFQEPGLTVKKGAKE---AEEAVDGFFPSVAKYLKHTPDGDEVDTELKEGLAASLGRLEAHLTKEGRTGPFLVGDGEKVALQDCALAPKLYHMTVGLKMFKDNALDVAKDFPTVQKYIDTMFARESFAKSTYPEETVAWGWGNARG 231
[Close]
BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Match: A0A7S0AQ91_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AQ91_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.800e-47
Identity = 97/240 (40.42%), Postives = 136/240 (56.67%), Query Frame = 3 
Query:  207 ETPTAGPGLITPNMELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKLTPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLSLKDDPDKMDKAKEVTKGVFGAVAKCVKNLEAANDPD--LVSAVMAELKKVDAHL------EATKGPFLTGE--QMTLADCSFAPKLYHASTCLAHFKNTVIPPE--LESLHKYMDMIYSHDAFVKSTYPPDIVVWGWNKAR 890
            E P  G   +   M L+ KA  DG+++GDCPF HY+++VL  K L + L P   +TKP+WL++ YDG MP L    E Y ESD +  Y+++F+ EP LS  D    + KA+EVT G+F ++AK +K+    ++ D  L  ++M  L +++ HL      E T GP+  G     TL D S APKLYH  T L  FK   I        L  YMD +++  +FV S YP + VVWGW+ AR
Sbjct:   17 EIPEEGATPLPGGMTLYLKAGPDGTSVGDCPFAHYVRIVLNEKGLEYDLKPSTQETKPQWLIDYYDGSMPALRHRKECYVESDVIAQYLDFFFQEPPLS--DKKRFVAKAQEVTDGLFPSIAKYLKHTPDGDEEDEALKLSLMDALSRLEDHLGDESDGERT-GPYFVGNGSTFTLVDASLAPKLYHMQTGLKEFKGNAIDVAAVFPQLRGYMDSVFARQSFVDSIYPEETVVWGWSNAR 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12253.1434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMV2_ECTSI2.070e-14067.67GSH-dependent dehydroascorbate reductase, monomeri... [more]
A0A835ZA14_9STRA1.030e-10056.07Glutathione dehydrogenase (ascorbate) n=1 Tax=Trib... [more]
A0A4D9D9T1_9STRA4.830e-7753.46Glutathione dehydrogenase (ascorbate) n=1 Tax=Nann... [more]
W7U001_9STRA2.990e-7653.92Glutathione dehydrogenase (ascorbate) n=1 Tax=Nann... [more]
A0A7S2SR18_9STRA2.810e-6547.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SQ66_9STRA2.020e-6447.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3KYN6_9STRA5.440e-5438.62Glutathione dehydrogenase (ascorbate) n=1 Tax=Amph... [more]
B7G1X6_PHATC5.730e-5137.35Glutathione dehydrogenase (ascorbate) n=2 Tax=Phae... [more]
A0A6U5M7R9_9STRA9.210e-5040.00Glutathione dehydrogenase (ascorbate) n=1 Tax=Gram... [more]
A0A7S0AQ91_9STRA2.800e-4740.42Glutathione dehydrogenase (ascorbate) n=1 Tax=Minu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12253contigH-paniculata_contig12253:786..6855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.2
Seed ortholog evalue7.8e-112
Seed eggNOG ortholog2880.D8LMV2
KEGG rclassRC00011,RC00092,RC00948
KEGG koko:K21888
KEGG TC1.A.12.2.1
KEGG ReactionR01108,R03522
KEGG Pathwayko00053,ko00480,ko01100,map00053,map00480,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chloride channel activity
EggNOG OGsKOG1422@1,KOG1422@2759
Ec32 ortholog descriptionGSH-dependent dehydroascorbate reductase
Ec32 orthologEc-02_003740.1
EC1.8.5.1,2.5.1.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons7
Model size1418
Cds size855
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.3045764-UTR-H-paniculata_contig12253:785..8381622928947.3045764-UTR-H-paniculata_contig12253:785..838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12253 786..838 +
1691480677.3895524-UTR-H-paniculata_contig12253:785..8381691480677.3895524-UTR-H-paniculata_contig12253:785..838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12253 786..838 +
1622928947.4417374-UTR-H-paniculata_contig12253:6345..68551622928947.4417374-UTR-H-paniculata_contig12253:6345..6855Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12253 6346..6855 +
1691480677.4792976-UTR-H-paniculata_contig12253:6345..68551691480677.4792976-UTR-H-paniculata_contig12253:6345..6855Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12253 6346..6855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.3179119-CDS-H-paniculata_contig12253:838..9491622928947.3179119-CDS-H-paniculata_contig12253:838..949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 839..949 +
1691480677.4025564-CDS-H-paniculata_contig12253:838..9491691480677.4025564-CDS-H-paniculata_contig12253:838..949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 839..949 +
1622928947.3372202-CDS-H-paniculata_contig12253:1563..17161622928947.3372202-CDS-H-paniculata_contig12253:1563..1716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 1564..1716 +
1691480677.4167757-CDS-H-paniculata_contig12253:1563..17161691480677.4167757-CDS-H-paniculata_contig12253:1563..1716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 1564..1716 +
1622928947.3582213-CDS-H-paniculata_contig12253:2297..23571622928947.3582213-CDS-H-paniculata_contig12253:2297..2357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 2298..2357 +
1691480677.4269247-CDS-H-paniculata_contig12253:2297..23571691480677.4269247-CDS-H-paniculata_contig12253:2297..2357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 2298..2357 +
1622928947.3753648-CDS-H-paniculata_contig12253:3710..38661622928947.3753648-CDS-H-paniculata_contig12253:3710..3866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 3711..3866 +
1691480677.4366-CDS-H-paniculata_contig12253:3710..38661691480677.4366-CDS-H-paniculata_contig12253:3710..3866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 3711..3866 +
1622928947.3944006-CDS-H-paniculata_contig12253:4692..48101622928947.3944006-CDS-H-paniculata_contig12253:4692..4810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 4693..4810 +
1691480677.4469397-CDS-H-paniculata_contig12253:4692..48101691480677.4469397-CDS-H-paniculata_contig12253:4692..4810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 4693..4810 +
1622928947.4105449-CDS-H-paniculata_contig12253:5642..57991622928947.4105449-CDS-H-paniculata_contig12253:5642..5799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 5643..5799 +
1691480677.4614933-CDS-H-paniculata_contig12253:5642..57991691480677.4614933-CDS-H-paniculata_contig12253:5642..5799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 5643..5799 +
1622928947.4276893-CDS-H-paniculata_contig12253:6245..63451622928947.4276893-CDS-H-paniculata_contig12253:6245..6345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 6246..6345 +
1691480677.4714522-CDS-H-paniculata_contig12253:6245..63451691480677.4714522-CDS-H-paniculata_contig12253:6245..6345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12253 6246..6345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12253.1434.1prot_H-paniculata_contig12253.1434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12253 839..6345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12253.1434.1

>prot_H-paniculata_contig12253.1434.1 ID=prot_H-paniculata_contig12253.1434.1|Name=mRNA_H-paniculata_contig12253.1434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MRTSPRFIVSKKARDEIIDGDGPTTITVDMKSGDIIKEVTSQKDMRAKLE
KETPTAGPGLITPNMELFCKAAADGSALGDCPFTHYIQMVLRYKDLPFKL
TPCAPDTKPEWLVEEYDGQMPCLVDNGEAYTESDEVVAYIEYFYPEPTLS
LKDDPDKMDKAKEVTKGVFGAVAKCVKNLEAANDPDLVSAVMAELKKVDA
HLEATKGPFLTGEQMTLADCSFAPKLYHASTCLAHFKNTVIPPELESLHK
YMDMIYSHDAFVKSTYPPDIVVWGWNKARGTEAK*
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mRNA from alignment at H-paniculata_contig12253:786..6855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12253.1434.1 ID=mRNA_H-paniculata_contig12253.1434.1|Name=mRNA_H-paniculata_contig12253.1434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6070bp|location=Sequence derived from alignment at H-paniculata_contig12253:786..6855+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGACGCAGGTCTCGGGGCGGTCGGTCGTCCGAAGAGGCAGTGACCTT
TCTATGCGCACAAGCCCCAGATTTATCGTAAGTAAGAAGGCGAGGGACGA
GATCATCGACGGAGACGGACCGACGACGATCACTGTGGATATGAAATCTG
GCGACATCATCAAGGTGAAGAGGCAAAGAACAGAAGAAGATAACAGAGAG
TTGATATTTTTTTATTATTCTAAGAAATTATTGTAGTGATTTTTTGTTGT
GAAGGAAGAAATAGTGTCCTTCTGCATTTTTTTTGGTTTTTTTTCTAGTT
TGGAGTCTTGAGTTTTTGCAATGCTGCCGTCGTCTTATGAATGTTACGTA
ACTGTTTTGATTTTTGGTTTTTGTTGGTGTGTAAAAATAGTGTTTTTTAG
GTTGAGACTTTTTGAGGCAAGAAGTCGAGCGCCGATGAGAAAAGGACCGG
AAGTAAGCTACGGTAGTACTTGTGGTGTGCACCGGTCGAAGGAACGGAGA
GATGTAGATGCCTCTCCTGGCAGGGTCGAACTAGTCAGGATATGTACGGC
TGCATGTTTTGGGTGTTTTTTGGCAGTGGCTGCGAAATGGTCATCATTTT
GCCTCATGATCTCGATCAGTGGCGAACGTCCAAGACGGGTAGGTTCACCT
GATTGAGAAGCTACCTTTTTGCTGCAGTGTGGTTTTGTGTGATGTGTACT
CCTCTGTATCGTTGTCGTGCGTTTTTTTTTTTTTTTTCTGGTTCGTCTTG
GCACTCTGCTGGAAATATCAATCAACAGGAGGTAACAAGCCAGAAGGACA
TGAGGGCCAAGTTAGAGAAAGAGACCCCCACAGCAGGGCCCGGTCTGATC
ACCCCGAACATGGAATTGTTCTGTAAGGCTGCAGCGGACGGTTCCGCTCT
GGGCGATTGTCCGTTCACACACTACATTCAGGTATGGAGTACGCGTGTAC
GTACATGGAAGCCTAATTTTATTGAAGGTGTGTAGTACGCTCTTGCTTGC
CACTCGAAGTCGTATTCGAGAATATTCGAAAATACTGAGAAAATCTAGGC
GGTTTGTTGACTGTACTTTTTTTTTTGTCAAAACTGTATTTATTTTCTTG
TCAAAATTGTATTTATTTTCTTGTCAAAATTGTATTTATTTTCGTGTCAA
AACTGTATTTTTTTCTTGTCTCCAGGTTTTCAATCTAGCGTGCTTCGCAA
TGTCGAATCGGGACCCAGTAGCTTCGAAGTCGATCTGAACGTTGGTTGCA
GCGCTGGGCGCCGCCGTAATGACCAAAACCTCGAACATCGTAATAAAATT
CCAATTAAAAAAAACGTACCCAAAGTATGGTACTGCCGCTGCCATGTGTT
TGTGGCGATGAACTGGGGTACGTGAACCTACTACCCAAGGCTATGGTGGG
TCAAGTAGGAAAGCCCGTCGCCTTCCTCCCCTCTTTTGGTGTCTTGGCGG
ATGGGTGGTTGCTTTTCCTCTTTGACTTCTCGTGCCTGTTTCTCCCTTTT
GTGCTGCTACAGATGGTACTTAGGTACAAGGACCTCCCGTTCAAGCTGAC
CCCGTGCGCCCCAGACACAAAGGTACTTTTTTTTTTTTTTTTCTGTTTGG
ATGCGAGATTGCTTCGAAAGTGCAGTACATTTCGAATCTCCTTTACGACA
TACTTTTTTCTTTATTTGTTATTGTGCTGATGAGGGTAAATAGCTCAAGT
TGGACCATCAGCCGCATAACCTCTACTTGCGTACAGTGGAGTTATTATGT
GAGCTTTGGACCTACAGCTCAACATGCCCCTCTCCCCTCCCTCACTGGTC
ATGATCTAATTTTACCGATACGTGTATACACCTGCAAAATGAAGTCAGGT
GTATATACTGTCAACATGAGTACAATGAAATTATTATTTGAGTTTCAGAG
CTTGAGTTTAGCAATAGTAGCCCCCCCCCCCCGATATCTCTCTGTATGTT
ATTCAGGAGGGGGATAATAGCACTGAAGTTGATGATGTCTGGCTTATGCA
GTATTGTGAACTTTTTGGGTTGGAGCTATTGTTTTGAGTCGGTCGTTCAA
GTGTTGGAAGATACATGGCTCGTTTTTTTCACCTGTTTCTGTTGTGCCTG
GTACAGTGTTCGGCTAGGGCGTAGACATGCAACATATTCTGCGCGTTGGT
AATTCCTATTTTTGTTGTTGTTGTTGTTGTGTCGAGAGTTGCCACGCTTT
GGTTTATTTGTTGATGAGCTAGCGATGGTTGGTCGATAAGGGGGTCGACA
CCGCATGCTGGACGTCCTGTGTATCATGTCCTTTTGATGACTCCTGTTTT
GTGGATGTAGGTTTTATTGGTAATGCTTTAGTGTTGTCATATTATTTCAG
TGCAAAAAAGGGATTGTCTTGGAACGTTTTCCCCTGGAAATGTCACAAAT
CATTCGCCCGAGAGTTCAGCATGAAAAGCATGTTAATCTCATGGGTCCCG
GACCATTTATTTACTTGTTACGACTTCGGCGACCAGTAAAGAGGCGAGGA
AATAGGAGTGGACAGAAATCCAGCGCTTTTTTTTTTCTTCGTTTTAGTTT
GTGTCATGTTCTACGTTGTGAAATTTGGGAGAAAATGTGATGAAAGTGTT
ACTATCTAAACCATTAGATTTTTTTATTTTTTTTTCCCGTTCCGCCTTGT
TTTGTACTCCCCCGTATGGTGTAACCGTTTTTTTTCTATTCGTTATTATT
GCTGTTTTGCCTGCTATCGCCGTTCCACCTGCCGTCACTTTTTAGAGGCC
ATCTGCAGTTAATTGTATGTTCGGGTGCAGTCGATATACCCTTTGCTGTA
GATGTATGGTCTGTTCACGGCATCCGTAATCGCACGTTGTTAACCCCATC
CGCCCCACCCTGCTTGTCTTGGGCGCATCATGCCCTTAACTTCGGAATTC
CGACCGATGAAATGAATCTGCGCAGCCGGAGTGGCTGGTGGAGGAGTACG
ACGGGCAGATGCCGTGCCTGGTGGATAACGGCGAGGCGTACACCGAGTCC
GACGAGGTTGTGGCTTACATCGAGTACTTTTACCCCGAGCCGACCCTGAG
TCTCAAGGACGACCCAGACAAGATGGACAAGGTGTGTGTGTGTGTTTGTG
TGTCTTTTGTTGATTTTGTTGGTTTTGCGTTGGATTCTTTTTGTTTGCTT
TCCTTTGCTTTGTTTTTTTAGTTAAGGTTCATTTTTTTCGTTTTATTTCA
GTATTTCCTTTATTCGTGCCTTGTGGTGTTGGAGGGTAAATTAGCCGTTT
CATTACATTGTTGGCGTTGGAAACTCGTTTTTCACTTTAGGCCGTCGGAT
GGCCTATTTGCGACACGAATTCGACCATGGTAGAAATCGAGTCGAGTCGC
GTCAGAGCACAACCCCCCCCCCCCGTCGCAGAGAGGTATGCCTTCTCCTC
CCAACACAATATCCTCCATCATACATCCACACGTTTGGCATTTTACGTGG
TTTTCTTCACGATACATGATTTGATTAAATATATATATATATATATATAT
ATTGGAAGGAAGAGATTGTCCATGCACCACTGCACCTTTCAACCGAAAGA
ACGATGTTGATACTAACAAAAAAAAACAGTGTTGATCATGATGACAAAAA
CACATGTGCGCGAAAAAAGACGTATTCTGTTTTCAAATATTGGTCGGTTG
GTTGTGATTTGTGTGAGGTTATGTGAATGCTATTTTCATGTCATCACAGT
CAGTTAAACCAGATGCACTGTAGATGCGCCAATTATTGAACGCTATTTTT
ATTTTTGCGATGAATAGCGCTCCTCGGCCGGTCATTCACTATTCCGCCGG
TCCCTCCGTCCCTACCCACGTTTCGTAACACCTGCACACACACGCATATA
TATATATATATATATATCTATTGATTCATGCACCCACGCGCGGCGCTTGT
TTGGAAGGCTAAGGAGGTGACGAAGGGAGTATTCGGGGCCGTCGCCAAGT
GCGTCAAGAACTTGGAGGCGGCGAACGATCCCGACCTCGTGAGCGCAGTT
ATGGCGGAGCTGAAGAAGGTCGATGGTGAGAGTGACGTTACAGCAATCTT
TGTTTGGTCGTTGAACTGTCGAACTTTCGTCATATATATATGTATATATA
TTTATACGTTCTTTGCTGTGCGTTTTTAGATTTTTTTTTTTTTTTTTTTA
GATTCTGCTCTCGTTAGTAGAGTTGGTTATTAAAGATAATACCACAGGTG
ATGACTTTGTTGAAATTCACTGTCAAGAAAGGCTAATCCTTGACCACGGA
AGAAGCAGTCGATCAGGTCAAAAATCAGAAAGGTGACGTTCGGTTTTTTC
CTTTTTGCTAAGAAGACATGTCTACTGGCGTCTCCAGCGCCGTCTGTTTT
TCGATATGAAGAAAGTGCGCGGAGCAATCGTTCTCGGTTGTCATGGTTGC
TGTGATGGGCGACGACTCCAAATTCATTTTTACGGTGTGATCGTCGTATG
ACCCTGTGTCACGCTATTGGTGTGTTATCTCGTGAGCTCCCTCGTCTAAT
GTAGCTGCGCTGACGACGCGCACTGAATGTTTTGCCGGTCTCTCAACATT
ACACGGATGGTGTAGAATTCAGCGTAACTTGATGTAGTTTTTCCCGCGCT
GATATGTTGGTCTAGCGTCCGATGTCCTTTGTGTGTGCCGGATTCGTGGC
ATTAAACGTTCGGACGCGGCATGTCTGAGGCAGTCAAACAGTGCAGGGTT
ACTCGAATGGTGTGCTCCGATTTGAGGGTACAATTTATTGAACAACCGGG
ACGGTCCCAAATGACGTATGGCCCAGGTGCCCAGTTGCTTTTTTAAGGGT
TTGATGCTTGTTGCGGTCATTTTCCACGTTCCCTTTTCGACCGTCGCGGT
GTAACAGCCCACTTGGAAGCCACGAAGGGACCTTTCTTGACGGGAGAGCA
GATGACCTTGGCCGATTGCTCCTTCGCCCCCAAGCTATACCATGCGTCGA
CTTGCCTGGCACATTTCAAGAATACCGTCATCCCTCCCGAGTTGGAGTCT
CTGCACAAATACATGTGAGTTCGGTTCTCTCACCGCTTGTTGCTTTCTCT
TCGTCCGTCTCTCCTTATGGTTCTTGTTCTCTCTCTGCCGGTGGGTGGAT
TTGTGGTTTTTTGTCGAACTTTGATGAAATTGCTGCGATCAATTGACTGG
CAGGTAGGTACTGTGGTGTAAAAGTGTTTTTTTTTTTTTTGTTTCGTTAC
TTCGTTCTTTATTTCTGCTAAGACGGGAGCGCAATGACCGAGATGTCTTC
AAGTGGTAACAACTGGATGCAATACGATGTATACTTCGAGCATTTGCGAT
TTCACACACAAGCCCTCTTGATATCGCGTGCCCCCACCGCTACCCCTCCC
TTCCTCCCGCCCTATGCCCCTGCGTATTGTTTTTGGCCTTTATATCGGCT
GTTGACCCATTCGTTGATGCTGCTTTTTTATTTTGCTGCTGCCTTCTGCC
ACGCTGCCAGGGACATGATTTACTCGCACGATGCCTTCGTAAAGTCGACC
TACCCCCCCGATATTGTGGTGTGGGGGTGGAATAAGGCACGGGGAACGGA
AGCGAAGTAGTTGGTGGAAGATCGTCTGTAATCGGACGGGAGGAAGGGGG
TGATGACTGCGCCTCCATATTTTTTGTCCGTGGTGGGGGCTTGTTTGTGA
ATCTTGAAAGTGGTGTAATTTTAGCGTAACTGGAGCACTTGGAAATCATT
AAAATGGCAACAATTTGTTTTTACATGTTAATCTTGGTCTGTTTGAATTA
CCCTAGTTGCTTTTCTATGCCCCGGACCATCCACAACTGCTAATATTACT
CGTAGATCGAGTGGATAGTGGTGGGTATTTTATTCTAGGTGTCCTTCCTC
TCCAGCATATTCCCGCCTCCTGCCCATTTAGTAGCAACCCCGGTGTGCTC
GACGCATGTCTCGTGGCAGTAGAAGTTGAATTATTAGAGAGGCGCTGTGA
CCCTCCCTAGCATCTCGGGGTCGTGTTTATCACTCCACTCGTGGCTTATG
CCCTATTGTCTTTGTCGTGCCTTCAACAAGATTATAGATGTGTTCGAATC
TACAAAACATTTCTTAGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12253:786..6855+

>mRNA_H-paniculata_contig12253.1434.1 ID=mRNA_H-paniculata_contig12253.1434.1|Name=mRNA_H-paniculata_contig12253.1434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig12253:786..6855+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCACAAGCCCCAGATTTATCGTAAGTAAGAAGGCGAGGGACGAGAT
CATCGACGGAGACGGACCGACGACGATCACTGTGGATATGAAATCTGGCG
ACATCATCAAGATGCGCACAAGCCCCAGATTTATCGTAAGTAAGAAGGCG
AGGGACGAGATCATCGACGGAGACGGACCGACGACGATCACTGTGGATAT
GAAATCTGGCGACATCATCAAGGAGGTAACAAGCCAGAAGGACATGAGGG
CCAAGTTAGAGAAAGAGACCCCCACAGCAGGGCCCGGTCTGATCACCCCG
AACATGGAATTGTTCTGTAAGGCTGCAGCGGACGGTTCCGCTCTGGGCGA
TTGTCCGTTCACACACTACATTCAGGAGGTAACAAGCCAGAAGGACATGA
GGGCCAAGTTAGAGAAAGAGACCCCCACAGCAGGGCCCGGTCTGATCACC
CCGAACATGGAATTGTTCTGTAAGGCTGCAGCGGACGGTTCCGCTCTGGG
CGATTGTCCGTTCACACACTACATTCAGATGGTACTTAGGTACAAGGACC
TCCCGTTCAAGCTGACCCCGTGCGCCCCAGACACAAAGATGGTACTTAGG
TACAAGGACCTCCCGTTCAAGCTGACCCCGTGCGCCCCAGACACAAAGCC
GGAGTGGCTGGTGGAGGAGTACGACGGGCAGATGCCGTGCCTGGTGGATA
ACGGCGAGGCGTACACCGAGTCCGACGAGGTTGTGGCTTACATCGAGTAC
TTTTACCCCGAGCCGACCCTGAGTCTCAAGGACGACCCAGACAAGATGGA
CAAGCCGGAGTGGCTGGTGGAGGAGTACGACGGGCAGATGCCGTGCCTGG
TGGATAACGGCGAGGCGTACACCGAGTCCGACGAGGTTGTGGCTTACATC
GAGTACTTTTACCCCGAGCCGACCCTGAGTCTCAAGGACGACCCAGACAA
GATGGACAAGGCTAAGGAGGTGACGAAGGGAGTATTCGGGGCCGTCGCCA
AGTGCGTCAAGAACTTGGAGGCGGCGAACGATCCCGACCTCGTGAGCGCA
GTTATGGCGGAGCTGAAGAAGGTCGATGGCTAAGGAGGTGACGAAGGGAG
TATTCGGGGCCGTCGCCAAGTGCGTCAAGAACTTGGAGGCGGCGAACGAT
CCCGACCTCGTGAGCGCAGTTATGGCGGAGCTGAAGAAGGTCGATGCCCA
CTTGGAAGCCACGAAGGGACCTTTCTTGACGGGAGAGCAGATGACCTTGG
CCGATTGCTCCTTCGCCCCCAAGCTATACCATGCGTCGACTTGCCTGGCA
CATTTCAAGAATACCGTCATCCCTCCCGAGTTGGAGTCTCTGCACAAATA
CATCCCACTTGGAAGCCACGAAGGGACCTTTCTTGACGGGAGAGCAGATG
ACCTTGGCCGATTGCTCCTTCGCCCCCAAGCTATACCATGCGTCGACTTG
CCTGGCACATTTCAAGAATACCGTCATCCCTCCCGAGTTGGAGTCTCTGC
ACAAATACATGGACATGATTTACTCGCACGATGCCTTCGTAAAGTCGACC
TACCCCCCCGATATTGTGGTGTGGGGGTGGAATAAGGCACGGGGAACGGA
AGCGAAGTAGGGACATGATTTACTCGCACGATGCCTTCGTAAAGTCGACC
TACCCCCCCGATATTGTGGTGTGGGGGTGGAATAAGGCACGGGGAACGGA
AGCGAAGTAG
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