mRNA_H-paniculata_contig12251.1433.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12251.1433.1
Unique NamemRNA_H-paniculata_contig12251.1433.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12251.1433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12251contigH-paniculata_contig12251:510..4266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1682
Cds size1065
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12251.1433.1prot_H-paniculata_contig12251.1433.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12251 672..3754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.2017019-UTR-H-paniculata_contig12251:509..5631622928947.2017019-UTR-H-paniculata_contig12251:509..563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12251 510..563 +
1691480677.331501-UTR-H-paniculata_contig12251:509..5631691480677.331501-UTR-H-paniculata_contig12251:509..563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12251 510..563 +
1622928947.21738-UTR-H-paniculata_contig12251:620..6711622928947.21738-UTR-H-paniculata_contig12251:620..671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12251 621..671 +
1691480677.3451006-UTR-H-paniculata_contig12251:620..6711691480677.3451006-UTR-H-paniculata_contig12251:620..671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12251 621..671 +
1622928947.2662868-UTR-H-paniculata_contig12251:3754..42661622928947.2662868-UTR-H-paniculata_contig12251:3754..4266Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12251 3755..4266 +
1691480677.3803039-UTR-H-paniculata_contig12251:3754..42661691480677.3803039-UTR-H-paniculata_contig12251:3754..4266Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12251 3755..4266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.2283843-CDS-H-paniculata_contig12251:671..11271622928947.2283843-CDS-H-paniculata_contig12251:671..1127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12251 672..1127 +
1691480677.3520632-CDS-H-paniculata_contig12251:671..11271691480677.3520632-CDS-H-paniculata_contig12251:671..1127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12251 672..1127 +
1622928947.241353-CDS-H-paniculata_contig12251:2080..25761622928947.241353-CDS-H-paniculata_contig12251:2080..2576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12251 2081..2576 +
1691480677.359749-CDS-H-paniculata_contig12251:2080..25761691480677.359749-CDS-H-paniculata_contig12251:2080..2576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12251 2081..2576 +
1622928947.2526102-CDS-H-paniculata_contig12251:3641..37541622928947.2526102-CDS-H-paniculata_contig12251:3641..3754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12251 3642..3754 +
1691480677.3711467-CDS-H-paniculata_contig12251:3641..37541691480677.3711467-CDS-H-paniculata_contig12251:3641..3754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12251 3642..3754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12251.1433.1

>prot_H-paniculata_contig12251.1433.1 ID=prot_H-paniculata_contig12251.1433.1|Name=mRNA_H-paniculata_contig12251.1433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=355bp
MTPPHYLTTSGDFSVSLSGESYPAQGDSNSEIHNTGGRFATAPGVHRTEV
QQQFLLTRDHSLRACSIRPTGGSGGGGRGGSGGRKRQSSCARYDSEYDGE
GEHEEVGHRCTRGSGGAAVTPLMSWDVNGFSSAEEEMEDEEAGGATWRSD
REIELATAASTWRSASVTGGGGGGETAGSRELAGASSSSHLDSGDRVGLL
GEARSDGCRSTDSMKAAAAAAVEDNEVAGLLVGRFDGVPREGGGEGAATG
NGRRSGDLFSGHGQSTPFSRKRSLRLSKPLFIEIEDKASEPPLVRPRSGR
QSRRDGDGDGAGEDESSEGEGGCCGCARRCMRQVEGLYRALSGANDKFSR
VGLS*
back to top

mRNA from alignment at H-paniculata_contig12251:510..4266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12251.1433.1 ID=mRNA_H-paniculata_contig12251.1433.1|Name=mRNA_H-paniculata_contig12251.1433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3757bp|location=Sequence derived from alignment at H-paniculata_contig12251:510..4266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGCCAAGAAACCGGGAAATGGGCGTCGTCACTTCACGAGCATGACAA
CAACGTACGATGTGCACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAACAGCAACAACAACAACAACAACAACAACAACAACAATCCGCC
AAGACCGAAACAATGACGCCTCCTCACTACCTAACAACAAGCGGAGATTT
TAGTGTCTCCTTGAGCGGCGAGAGTTATCCTGCACAGGGAGATAGTAATA
GCGAGATACACAACACAGGAGGTCGTTTCGCCACAGCACCAGGCGTCCAC
AGAACTGAAGTGCAGCAGCAGTTTTTGCTCACAAGAGATCATTCCCTTAG
GGCTTGCAGCATAAGACCAACTGGAGGGAGCGGCGGCGGCGGCCGTGGTG
GTAGCGGTGGCAGAAAGCGGCAGTCGTCCTGCGCACGGTACGATAGCGAA
TACGATGGCGAGGGGGAGCACGAGGAGGTAGGTCATAGATGCACGAGGGG
CAGTGGTGGGGCTGCGGTGACTCCGCTAATGTCGTGGGATGTGAATGGAT
TCAGCTCTGCAGAAGAGGAAATGGAGGATGAGGAAGCGGGAGGGGCGACG
TGGAGATCAGACAGGGAGGTAATGACCGAGGGATTGTCTTGCCTTTTTTT
ATTACTTGTAGCGCTGGATTGTACCATGGAAAATGACTTGTATATGTACA
TTGTATATGTGGTTGTCGTTCTTTCCCTCTCTCTCCCTTTCCCCCCCCTC
CCCTACTCTCTTGAACGGAGCGATCGTATTATCCGCATGTATTGTAGATG
AACATATGCATATATATATCTTGTGATCAAGACGTTAAGTACTAGATCAA
CAAGTAACCAACACGGCTCTCAACAAGTTGCCACTCTACTGGACGCCGCA
CACAACACAACAGGTTACAACTAGGAGAGGTCAAACACACGTGATCTGTC
AACAGGGCCTTCGAGTGGCATTGTACAGCAGGCGTTTTCATACGTACCCG
TTATATTGGTCATTTGCCATCGGTCGTTGTTGGTATTGATGAGTGTTTGG
TGTTTCATGCAGCGTTGGAAGCGCAAGGTATATTCACGTGAGTGCGTTGA
GCCTCTTCAAGTGAAGGTAGAGAGCAAATGTCCATTTTTGACCACAAGTT
GTCTTGACTTGGTCTTGAATCATTTCCTAACAACAGTTTTATCGGGTTGA
ATTTTACGTACTGATCAGAGGTGAGTTGGCGACTCGATGCCTTGCGCATG
TGGTTCAATCAATGTTGGTGACGAAAATCAGTTCCGTACTTGACTAGTTA
GACCTCTAGCACCGAAAAATAGAGTTTTTGATTGTGTTGCTCCGTCTTCC
CCTTCTGTTCCAACTTCTCCTTGACTACATCATATTCCAACATGGTTATC
GAGGAAATCCTACAGAAATGAACAGTCACTTGAATTTTTTTTTCGGTTTT
TGTGGGGTCATAAATAGGTCCTGCCCTTAACCTAACCCCAACCCTAACCC
TCAACTCGTCCTTTTTTCCGCTTCTCTTAAAATCAACAACCATACGCGGC
GGCGGCGGCGGCGGCTGATAGATCGAGCTAGCCACTGCGGCTTCTACCTG
GCGCTCCGCGTCAGTCACCGGCGGCGGCGGTGGGGGGGAAACGGCCGGAT
CTCGAGAACTAGCCGGCGCATCATCATCATCGCATCTCGACAGCGGCGAC
CGGGTTGGACTTCTGGGAGAAGCTCGCAGCGACGGCTGCCGCAGCACCGA
TAGTATGAAGGCGGCGGCGGCGGCGGCGGTGGAGGATAATGAAGTAGCAG
GCCTACTAGTAGGGAGGTTCGATGGGGTACCTCGAGAGGGAGGAGGAGAA
GGGGCAGCGACAGGGAATGGACGAAGGAGTGGCGATTTGTTTTCAGGTCA
CGGGCAGTCGACTCCGTTCTCGCGGAAGAGATCCCTGAGATTATCGAAAC
CGCTCTTCATTGAAATTGAAGACAAGGCGTCGGAACCGCCGCTTGTACGA
CCTAGGAGCGGGCGACAATCAAGGCGAGACGGGGATGGCGATGGAGCTGG
GGAGGACGAATCAAGCGGTGAGTTGACGGGGGGGGGGGAGTGCTTATGCT
CTGCGTGTTTGTGTAGTTGTTGTATCCTCTACGTAGTACAATATCTGAGA
GATACATTTTAAACCAGACGTGATGACTCAGAAATGGTCGCCAGGCATGG
ATACACACGCATCTGAGTCGCGGACCCTGACCGACCGATCGACTCCGTTT
TCTGTCTTGAGAATTGCATCAGTGTATCATAGATGTCCATGCCGCCTACC
TTGATGTCTTAGATAATACCCTTCGGCAAATCTAAAAAACGTAAGGGAGG
GAAGTGGTCTCCGAGGGGTGTGCTGTTTGGAAGGGGAACGTTAGTAGGCC
AGCGTGCGGCCCAGATATGCGTAATAGGGTAGGTTATATGCTTCACACAT
CACATCCGAGGACTAAATAGTCGTCTAAAATGATTGATTACGACGGTGGT
GCGTGCCCCTTAACCCTAGTTGAAAACGAGGATTCATTCTCTCTCCAGTC
CCATTTACATGAATGAAATAAATAAATTAGACCGTGTGTATAGTACATGA
TGTCGTCTGATACATGTCATCTCTTCTTCAGCTCGACCCCGGCTAGGATT
CAGGATTTTGGACCACCATCGTAATCATGTCATTTCAGACAGACTATTTA
GCCCTTGGGATGTGTAAAGTAAATGACCCCTCCTGATAAACACGGATAAG
TGGAGAGCATTTGCAAAGAAAAGATGAATTATATGTTCATTCCTTAAATA
TTCCAAATGCGCGTTCGTGATTGTTTTGAAATATTCGGTGGTGACTGGAA
AGTATACCTTGAAGAAAGTTGGACGATGTTGGACTCCTAACGGTCTTAAT
ATTTAACCCCCCCCCCCCCCCCCCCCCCCCTAACCCCGGGCCTACGTAAA
CGCCTGCGATTCGCATACACTTCGTTCCTCTCTGACTCTTTTAAGTTTGT
CAATCTGTACATAAAAACGTACCCCTACCCCCACCCCCACCTCACCCTCC
CATTTCGCTGCCCTTTCGTTGTGTTGATTACTTGCTGTCTGGCTGTTGCT
GACTTGTTACGTATCTTTGGCTTATGATACAGAAGGTGAAGGCGGGTGTT
GTGGATGCGCTAGAAGATGCATGCGGCAGGTGGAGGGTTTGTACCGCGCC
CTTAGCGGCGCTAATGATAAGTTTTCAAGAGTAGGGTTGTCTTGAAAACT
ACCATCATCCAGTATCCGGGGGGGGAGGTATTCTCCGTGTCCCCAGGTTT
ATATATGTATATATTTTTTTCTCTTGTCTTGCACCAATATCGCAAACACG
TAGAATTCTGATGTACTCCGTTAATAGTGAAATATTAGCACAGGAGGTGG
CTCGAGTAAATTATTTTTGTGTATGTGGTTTGTGTTATTCGCTGGGTTGG
TGATATGCACGAATACAATTTCAGTACAAAATAAGGTTGCAGATCATATT
TAGAGAGGTTATTCATGTTCAGTATACGGGGGCTGTTTGTATGTCCGTAG
CCTCCTGCTACGTACGAGAAATCAGCATTAGAGGCGACATTTTCTGGAGT
ATGACGCAATATACTTGATTTTTCTTGAACGAAAATGTTTTGAGCTTACT
GGCGTCTCTCGAAGATGTGAACGGTAAGTCAGTGTAGTGCTATCGAGGGA
TTTTTTGCTTCAAATAGAATAAAACTATATGCGAAAGACTTCTTTTCATG
TAGGGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12251:510..4266+

>mRNA_H-paniculata_contig12251.1433.1 ID=mRNA_H-paniculata_contig12251.1433.1|Name=mRNA_H-paniculata_contig12251.1433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at H-paniculata_contig12251:510..4266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCCTCCTCACTACCTAACAACAAGCGGAGATTTTAGTGTCTCCTT
GAGCGGCGAGAGTTATCCTGCACAGGGAGATAGTAATAGCGAGATACACA
ACACAGGAGGTCGTTTCGCCACAGCACCAGGCGTCCACAGAACTGAAGTG
CAGCAGCAGTTTTTGCTCACAAGAGATCATTCCCTTAGGGCTTGCAGCAT
AAGACCAACTGGAGGGAGCGGCGGCGGCGGCCGTGGTGGTAGCGGTGGCA
GAAAGCGGCAGTCGTCCTGCGCACGGTACGATAGCGAATACGATGGCGAG
GGGGAGCACGAGGAGGTAGGTCATAGATGCACGAGGGGCAGTGGTGGGGC
TGCGGTGACTCCGCTAATGTCGTGGGATGTGAATGGATTCAGCTCTGCAG
AAGAGGAAATGGAGGATGAGGAAGCGGGAGGGGCGACGTGGAGATCAGAC
AGGGAGATGACGCCTCCTCACTACCTAACAACAAGCGGAGATTTTAGTGT
CTCCTTGAGCGGCGAGAGTTATCCTGCACAGGGAGATAGTAATAGCGAGA
TACACAACACAGGAGGTCGTTTCGCCACAGCACCAGGCGTCCACAGAACT
GAAGTGCAGCAGCAGTTTTTGCTCACAAGAGATCATTCCCTTAGGGCTTG
CAGCATAAGACCAACTGGAGGGAGCGGCGGCGGCGGCCGTGGTGGTAGCG
GTGGCAGAAAGCGGCAGTCGTCCTGCGCACGGTACGATAGCGAATACGAT
GGCGAGGGGGAGCACGAGGAGGTAGGTCATAGATGCACGAGGGGCAGTGG
TGGGGCTGCGGTGACTCCGCTAATGTCGTGGGATGTGAATGGATTCAGCT
CTGCAGAAGAGGAAATGGAGGATGAGGAAGCGGGAGGGGCGACGTGGAGA
TCAGACAGGGAGATCGAGCTAGCCACTGCGGCTTCTACCTGGCGCTCCGC
GTCAGTCACCGGCGGCGGCGGTGGGGGGGAAACGGCCGGATCTCGAGAAC
TAGCCGGCGCATCATCATCATCGCATCTCGACAGCGGCGACCGGGTTGGA
CTTCTGGGAGAAGCTCGCAGCGACGGCTGCCGCAGCACCGATAGTATGAA
GGCGGCGGCGGCGGCGGCGGTGGAGGATAATGAAGTAGCAGGCCTACTAG
TAGGGAGGTTCGATGGGGTACCTCGAGAGGGAGGAGGAGAAGGGGCAGCG
ACAGGGAATGGACGAAGGAGTGGCGATTTGTTTTCAGGTCACGGGCAGTC
GACTCCGTTCTCGCGGAAGAGATCCCTGAGATTATCGAAACCGCTCTTCA
TTGAAATTGAAGACAAGGCGTCGGAACCGCCGCTTGTACGACCTAGGAGC
GGGCGACAATCAAGGCGAGACGGGGATGGCGATGGAGCTGGGGAGGACGA
ATCAAGCGATCGAGCTAGCCACTGCGGCTTCTACCTGGCGCTCCGCGTCA
GTCACCGGCGGCGGCGGTGGGGGGGAAACGGCCGGATCTCGAGAACTAGC
CGGCGCATCATCATCATCGCATCTCGACAGCGGCGACCGGGTTGGACTTC
TGGGAGAAGCTCGCAGCGACGGCTGCCGCAGCACCGATAGTATGAAGGCG
GCGGCGGCGGCGGCGGTGGAGGATAATGAAGTAGCAGGCCTACTAGTAGG
GAGGTTCGATGGGGTACCTCGAGAGGGAGGAGGAGAAGGGGCAGCGACAG
GGAATGGACGAAGGAGTGGCGATTTGTTTTCAGGTCACGGGCAGTCGACT
CCGTTCTCGCGGAAGAGATCCCTGAGATTATCGAAACCGCTCTTCATTGA
AATTGAAGACAAGGCGTCGGAACCGCCGCTTGTACGACCTAGGAGCGGGC
GACAATCAAGGCGAGACGGGGATGGCGATGGAGCTGGGGAGGACGAATCA
AGCGAAGGTGAAGGCGGGTGTTGTGGATGCGCTAGAAGATGCATGCGGCA
GGTGGAGGGTTTGTACCGCGCCCTTAGCGGCGCTAATGATAAGTTTTCAA
GAGTAGGGTTGTCTTGAAAGGTGAAGGCGGGTGTTGTGGATGCGCTAGAA
GATGCATGCGGCAGGTGGAGGGTTTGTACCGCGCCCTTAGCGGCGCTAAT
GATAAGTTTTCAAGAGTAGGGTTGTCTTGA
back to top