mRNA_H-paniculata_contig12242.1428.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12242.1428.1
Unique NamemRNA_H-paniculata_contig12242.1428.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12242.1428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12242contigH-paniculata_contig12242:5295..6856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size175
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928946.4861941-CDS-H-paniculata_contig12242:5296..54101622928946.4861941-CDS-H-paniculata_contig12242:5296..5410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12242 5297..5410 -
1691480676.952732-CDS-H-paniculata_contig12242:5296..54101691480676.952732-CDS-H-paniculata_contig12242:5296..5410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12242 5297..5410 -
1622928946.496907-CDS-H-paniculata_contig12242:6799..68561622928946.496907-CDS-H-paniculata_contig12242:6799..6856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12242 6800..6856 -
1691480676.9626968-CDS-H-paniculata_contig12242:6799..68561691480676.9626968-CDS-H-paniculata_contig12242:6799..6856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12242 6800..6856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12242.1428.1prot_H-paniculata_contig12242.1428.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12242 5297..6856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12242.1428.1

>prot_H-paniculata_contig12242.1428.1 ID=prot_H-paniculata_contig12242.1428.1|Name=mRNA_H-paniculata_contig12242.1428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
ERGIHKYLRDKYIPFEDTLNSETVPYNLGPSNKWDVNSTYLSPYDWLYGA
YAPPFWA
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mRNA from alignment at H-paniculata_contig12242:5295..6856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12242.1428.1 ID=mRNA_H-paniculata_contig12242.1428.1|Name=mRNA_H-paniculata_contig12242.1428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1562bp|location=Sequence derived from alignment at H-paniculata_contig12242:5295..6856- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACGGGGCATCCACAAATATCTCCGCGACAAGTACATCCCGTTCGAAGA
CACATTGGTGAGCCACTGTGCCCTATCGGAGTTAGTGCACTTTATTTCGA
ATGTCTAGATCACACCAAAGTACCTTTTCGATGGGGTATTTCTTCCCAAG
AGCTTTTTTTGTCAAATATATCAGCGCATTGGTCATTTTGTAACAGCCGA
TGCTCCCAACTGAGGATGGAAACGGCGTTTTCGCACCATGAAAATTGTCA
AAACTATTCTTGACTTTGAATTTATAAAATACTTCTTACATCATGTACTG
CAATCACAAAATAATCTTGACAAATTATCCTCACTTCTTGCTGATACTCC
TCTCACTACGAGTTTATCTTGGTTTATATATCACCCTTTTTTCCTCAGTC
AGGGATCAAGAATGATATTACAAAAATACACAGTGAGTCACAGCAGCAAC
AGCAGCAACGAGAATGGAAGGGGGGGAAAGAAGTAGCTCAATCATTTCCA
ACGATCACCACTGCCGTCGACAATATATTCGTTGCGATATTACTAGCTAA
CAATTAATTCCAATTGCATTTGAGAATCCAATCGCTATTTTGAGTTTTTT
GGAATACGAAACTCCGAAATGTTCGTTCGTTTCATTCGATGGAGTAAGGA
ATCAAACCTTCGTGCTAACTCTTGATATCTATTCCATTTAATTTGAAACG
GGTTTCTGAACGGTCCAATAGATGAAAGTAAATCCGCTTCAAGTTTCCGC
CCTTCCATCCCACTACCGCGGGCCTGACGACCACAATAGAAACGACACCT
TGCTGTCGGCCGTATAAATTTCCGCTCGGCGGTGCTGGTCTTGTCTGGCG
TCGTAATCATGGTCATCCACGGGGCAGTAACGTCATGTTTTACTAACGGC
AGCCCTACACCAGCGTCGACCATGACTGGAAGTGCACCATCTCCACATCT
TGAAGATGAACTTCCTACTCAACCCAACATGAAGAGAAGAAGTGTCTTAT
AAATTCAAACTCAATAGTTTTGACAATTTTCATGGTGCGAAAATGCCGTT
TTCATCCTCAAATATATATCGATCCTCAATTAGGGGGATCGGTTGTTTTG
TGTTAATTTTATTTCCATGAGCTTCTGACAGTCCGCAGAGCACGCGTTGC
TGACACCGTTGCTCAGTTCCTGTAGCCGATGGAAGAGCTGATATGTCGCG
AAATGGATTGTGCCAAATGTAATATTGTACATGGCGCCACATCATGCGCA
CGCCGAGAAGTGATGGAATGTTGAGGGTACATCGCACGTAATATCACGTA
TGAGGTATGGTAGATGTTGTCTGGAGGATCAGCAGGGAAATTCCATCTTG
GATGAAGTCTCCTGAAGAGCTCGCTGCACCATATATGCTCTTCCTGAAGT
GATGATGAACTGACATATTTAGCTGTGCTTTTATATCACGAATCAGAACT
CGGAGACGGTTCCCTATAACCTGGGCCCCAGCAATAAGTGGGACGTCAAT
TCTACCTACCTGAGCCCGTATGACTGGCTTTACGGAGCCTACGCACCCCC
TTTCTGGGCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12242:5295..6856-

>mRNA_H-paniculata_contig12242.1428.1 ID=mRNA_H-paniculata_contig12242.1428.1|Name=mRNA_H-paniculata_contig12242.1428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig12242:5295..6856- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACGGGGCATCCACAAATATCTCCGCGACAAGTACATCCCGTTCGAAGA
CACATTGGAACGGGGCATCCACAAATATCTCCGCGACAAGTACATCCCGT
TCGAAGACACATTGAACTCGGAGACGGTTCCCTATAACCTGGGCCCCAGC
AATAAGTGGGACGTCAATTCTACCTACCTGAGCCCGTATGACTGGCTTTA
CGGAGCCTACGCACCCCCTTTCTGGGCGAACTCGGAGACGGTTCCCTATA
ACCTGGGCCCCAGCAATAAGTGGGACGTCAATTCTACCTACCTGAGCCCG
TATGACTGGCTTTACGGAGCCTACGCACCCCCTTTCTGGGCG
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