mRNA_H-paniculata_contig12208.1403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12208.1403.1
Unique NamemRNA_H-paniculata_contig12208.1403.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: UPI0019394CC4 (transient receptor potential cation channel subfamily A member 1-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019394CC4)

HSP 1 Score: 60.5 bits (145), Expect = 8.440e-8
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  157 DNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAASTNRWIMLRLLVEAGADLYVRTKEGFSVHHFAVL 426
            D   +   + D+   + L  A ++G+ R+A+ L+R GA  ++     N TPL  AAS   WI +R L+EAGAD+ ++ K+G +V H  VL
Sbjct:  372 DQALVTLSMKDNQKHTPLHKAAMYGHGRIAQYLVREGAATDIPDAEEN-TPLLLAASRENWICVRQLIEAGADILLKNKDGRNVLHMIVL 460          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: A0A813AH93_SYMMI (DNAH1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813AH93_SYMMI)

HSP 1 Score: 58.5 bits (140), Expect = 4.060e-7
Identity = 43/132 (32.58%), Postives = 63/132 (47.73%), Query Frame = 1
Query:    4 FRATVNTPSLPLQSIAAFSIPSYLDVVMARHLAVHKEAKKGDVRGVITYLHDNPGID--------PDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAASTNRWIMLRLLVEAGAD 375
            FR  +      L S     +P  L V +  ++AV  EA   D     +  +D   ++        PD++DSDG +AL  A   G  +  ++L  G AD N  C +S STP+  AA T    ++RLL+E GAD
Sbjct: 1693 FRLKLFCGHTQLTSDTTLKLPLELQVTICDYVAV--EAVDVDELTDASLRNDAAAVEAFLRRPQHPDLVDSDGWTALLAAAGSGALQSVKLLASGRADLNKPCEQSGSTPVFLAAQTGHLDVVRLLIENGAD 1822          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: UPI0003C15A92 (protein phosphatase 1 regulatory subunit 16A-like n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0003C15A92)

HSP 1 Score: 56.2 bits (134), Expect = 1.260e-6
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 1
Query:   79 VVMARHLAVHKEAKKGDVRGVITYLHDNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAASTNRWIMLRLLVEAGADLYVRTKEG 399
            VV  +++ + + A + D       L    GI+PD+ + DG +AL   C+  +  + ++LL  GAD N  C     TPL AAA+     ++ LLV+ GA+L     +G
Sbjct:   70 VVFPQNIMLLEAATRNDAEEAGELLRS--GINPDLYNEDGLTALHQCCIDDFEEIVKLLLDAGADVNA-CDSELWTPLHAAATCGHLHLVELLVKHGANLLAVNADG 173          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: A0A6P8RHC8_GEOSA (inactive serine/threonine-protein kinase TEX14-like isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8RHC8_GEOSA)

HSP 1 Score: 57.0 bits (136), Expect = 1.330e-6
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  115 AKKGDVRGVITYLHDNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAASTNRWIMLRLLVEAGADLYVRTKEGFSVHHFAVLADS 435
            A KG  R V   L    GID ++ +S G++AL+ + L G+  V  +LL   A+ N +C +  STP+ AAA + R  +L  L+ AG DL +  +EG +   +A +A S
Sbjct:   58 ATKGRSRKVKQLLKQ--GIDVELQNSAGQTALFLSALFGHIDVTEILLHYRANVNHRC-KDGSTPVHAAAFSCRGPILLQLLSAGGDLRLHDQEGRTPRDWAEIAGS 161          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: A0A1G6ZRS1_9FLAO (Ankyrin repeat-containing protein n=1 Tax=Pricia antarctica TaxID=641691 RepID=A0A1G6ZRS1_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 1.550e-6
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  142 ITYLHDNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAASTNRWIMLRLLVEAGADLYVRTKEGFSVHHFAVLADSPDAL 447
            I+   D P I  ++ + +  S+   A + G Y   + L+  G D N K      TP   AA  N+  +L LL+E+GADL +++  GFSV  +A L+++ DAL
Sbjct:   24 ISAATDGPAITKNIKEVN-ISSFCKAIVKGDYNTVKSLVDLGEDVNQKS--LGMTPAMFAARYNKVEILELLIESGADLQIKSDNGFSVKKYAELSNAVDAL 122          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: A0A6P8Y4T1_THRPL (ankyrin repeat domain-containing protein 39 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y4T1_THRPL)

HSP 1 Score: 54.3 bits (129), Expect = 6.700e-6
Identity = 32/87 (36.78%), Postives = 45/87 (51.72%), Query Frame = 1
Query:  154 HDNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAASTNRWIMLRLLVEAGADLYVRTKEGFSVHH 414
            H   G + +  DS G + L  A   G+  +A +LLR GAD N++      TPL  AA + +  M + LVE GAD+     +G SV H
Sbjct:  122 HLRKGTNVNCYDSGGYAPLHYAARKGHIDIAHLLLRNGADINIRTRAGKVTPLLRAAYSGKEKMCKFLVEKGADVRAVDDDGQSVVH 208          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: A0A6G1J454_9PLEO (Ankyrin n=1 Tax=Lentithecium fluviatile CBS 122367 TaxID=1168545 RepID=A0A6G1J454_9PLEO)

HSP 1 Score: 53.9 bits (128), Expect = 1.500e-5
Identity = 33/92 (35.87%), Postives = 45/92 (48.91%), Query Frame = 1
Query:  157 DNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAASTNRWIMLRLLVEAGADLYVRTKEGFSVHHFAVLAD 432
            D P  D +  DS G +AL  AC  G    AR+LL  GAD  +       TPL AA       ++++L+E G D+ VRT+ G     + V  D
Sbjct:  462 DKPNCDINARDSFGNTALLWACRRGDEDSARILLVKGADPEIPNSNYGRTPLMAACVHPSVPIIKMLLENGVDVNVRTRSGLDALIYLVEED 553          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: UPI001C0D2ECD (ankyrin repeat domain-containing protein n=3 Tax=Polynucleobacter TaxID=44013 RepID=UPI001C0D2ECD)

HSP 1 Score: 53.1 bits (126), Expect = 1.610e-5
Identity = 28/85 (32.94%), Postives = 47/85 (55.29%), Query Frame = 1
Query:  184 LDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAASTNRWIMLRLLVEAGADLYVRTKEGFSVHHFAVLADSP 438
            +D  G + L  AC  G+  VA+ L+  GA  +    + N+TPL  A  +   ++++LL++ GADL +R  +G S    AV+ + P
Sbjct:  123 IDHVGWTPLHYACARGHLDVAQFLIANGAAID-SLSQGNTTPLMMAVQSGNEVLVKLLLDKGADLQLRNSQGLSAIDIAVIYEKP 206          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: A0A8J4GZG7_9BACL (Uncharacterized protein n=1 Tax=Xylanibacillus composti TaxID=1572762 RepID=A0A8J4GZG7_9BACL)

HSP 1 Score: 52.8 bits (125), Expect = 2.020e-5
Identity = 33/104 (31.73%), Postives = 53/104 (50.96%), Query Frame = 1
Query:   97 LAVHKEAKKGDVRGVITYLHDNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNST-PLQAAASTNRWIMLRLLVEAGADLYVRTKEGFS 405
            + VH+ A  GD   V   L   P +  D    DG + L  AC  G +  A +L++ GA  N+      +  P+ AAA+  R ++++LL+E GAD  V+   G++
Sbjct:   61 VTVHEAAMLGDADTVAYLLDQEPSL-LDTFSFDGWTPLHLACFFGGHEAAELLIQRGAQLNIASQNEMANCPIHAAAAGKRTLIVKLLLEHGADPNVQQHGGWT 163          
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Match: A0A1Z4KX76_ANAVA (Uncharacterized protein n=1 Tax=Trichormus variabilis NIES-23 TaxID=1973479 RepID=A0A1Z4KX76_ANAVA)

HSP 1 Score: 53.1 bits (126), Expect = 2.400e-5
Identity = 32/108 (29.63%), Postives = 54/108 (50.00%), Query Frame = 1
Query:  124 GDVRGVITYLHDNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSNSTPLQAAAS--------------TNRWIMLRLLVEAGADLYVRTKEGFS 405
            GD+  V+  + +  G+D + + S+G   L TA   GY  + RVLL  GA+   +      TPL ++A                N+  ++RLL+ AGAD+  ++ EG++
Sbjct:  204 GDLNTVVQTIKN--GVDVNAISSEGTIPLHTASFWGYLPIVRVLLEAGANLESRTEDDGKTPLMSSAEGSALLATYPSSIDRMNQIEVIRLLINAGADVNAKSNEGWT 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12208.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
UPI0019394CC48.440e-836.67transient receptor potential cation channel subfam... [more]
A0A813AH93_SYMMI4.060e-732.58DNAH1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
UPI0003C15A921.260e-631.78protein phosphatase 1 regulatory subunit 16A-like ... [more]
A0A6P8RHC8_GEOSA1.330e-636.45inactive serine/threonine-protein kinase TEX14-lik... [more]
A0A1G6ZRS1_9FLAO1.550e-634.31Ankyrin repeat-containing protein n=1 Tax=Pricia a... [more]
A0A6P8Y4T1_THRPL6.700e-636.78ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
A0A6G1J454_9PLEO1.500e-535.87Ankyrin n=1 Tax=Lentithecium fluviatile CBS 122367... [more]
UPI001C0D2ECD1.610e-532.94ankyrin repeat domain-containing protein n=3 Tax=P... [more]
A0A8J4GZG7_9BACL2.020e-531.73Uncharacterized protein n=1 Tax=Xylanibacillus com... [more]
A0A1Z4KX76_ANAVA2.400e-529.63Uncharacterized protein n=1 Tax=Trichormus variabi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12208contigH-paniculata_contig12208:3717..4163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog34373.CCU83237
Preferred nameAKR1
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006464,GO:0006497,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009966,GO:0009987,GO:0010646,GO:0010969,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0018345,GO:0019538,GO:0019706,GO:0019707,GO:0023051,GO:0030100,GO:0031090,GO:0031137,GO:0031224,GO:0032879,GO:0032991,GO:0033036,GO:0034613,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043900,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0046999,GO:0048583,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060238,GO:0060627,GO:0061951,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072657,GO:0072659,GO:0090150,GO:0098588,GO:0098805,GO:0098852,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1990778,GO:2000241
EggNOG free text desc.Belongs to the DHHC palmitoyltransferase family
EggNOG OGs20VTT@147548,38DBC@33154,3NVTK@4751,3QK60@4890,COG5273@1,KOG0509@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelLeotiomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size447
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.5772324-CDS-H-paniculata_contig12208:3716..41631622928942.5772324-CDS-H-paniculata_contig12208:3716..4163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12208 3717..4163 +
1691480675.1148772-CDS-H-paniculata_contig12208:3716..41631691480675.1148772-CDS-H-paniculata_contig12208:3716..4163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12208 3717..4163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12208.1403.1prot_H-paniculata_contig12208.1403.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12208 3717..4163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12208.1403.1

>prot_H-paniculata_contig12208.1403.1 ID=prot_H-paniculata_contig12208.1403.1|Name=mRNA_H-paniculata_contig12208.1403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MFRATVNTPSLPLQSIAAFSIPSYLDVVMARHLAVHKEAKKGDVRGVITY
LHDNPGIDPDVLDSDGKSALWTACLHGYYRVARVLLRGGADANLKCGRSN
STPLQAAASTNRWIMLRLLVEAGADLYVRTKEGFSVHHFAVLADSPDAL
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mRNA from alignment at H-paniculata_contig12208:3717..4163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12208.1403.1 ID=mRNA_H-paniculata_contig12208.1403.1|Name=mRNA_H-paniculata_contig12208.1403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig12208:3717..4163+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAGGGCAACAGTGAACACACCTTCCTTGCCCCTTCAGAGTATAGC AGCGTTCTCGATTCCCAGCTATCTGGATGTGGTGATGGCTAGGCATCTGG CAGTCCATAAGGAAGCGAAGAAGGGCGATGTACGTGGAGTGATAACGTAT CTACACGACAACCCCGGTATCGACCCTGATGTGCTCGACAGTGATGGGAA AAGTGCTCTTTGGACTGCTTGTCTTCACGGATACTACAGGGTTGCACGGG TGCTGCTCAGGGGGGGGGCTGACGCTAACCTCAAGTGTGGGCGAAGCAAC TCTACACCTCTTCAGGCAGCTGCTTCTACTAATAGATGGATCATGTTACG ACTGCTCGTTGAGGCAGGTGCAGATCTCTACGTCAGGACAAAGGAGGGCT TCTCTGTTCACCACTTTGCGGTACTAGCTGACTCTCCAGACGCACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig12208:3717..4163+

>mRNA_H-paniculata_contig12208.1403.1 ID=mRNA_H-paniculata_contig12208.1403.1|Name=mRNA_H-paniculata_contig12208.1403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig12208:3717..4163+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAGGGCAACAGTGAACACACCTTCCTTGCCCCTTCAGAGTATAGC
AGCGTTCTCGATTCCCAGCTATCTGGATGTGGTGATGGCTAGGCATCTGG
CAGTCCATAAGGAAGCGAAGAAGGGCGATGTACGTGGAGTGATAACGTAT
CTACACGACAACCCCGGTATCGACCCTGATGTGCTCGACAGTGATGGGAA
AAGTGCTCTTTGGACTGCTTGTCTTCACGGATACTACAGGGTTGCACGGG
TGCTGCTCAGGGGGGGGGCTGACGCTAACCTCAAGTGTGGGCGAAGCAAC
TCTACACCTCTTCAGGCAGCTGCTTCTACTAATAGATGGATCATGTTACG
ACTGCTCGTTGAGGCAGGTGCAGATCTCTACGTCAGGACAAAGGAGGGCT
TCTCTGTTCACCACTTTGCGGTACTAGCTGACTCTCCAGACGCACTCATG
TTCAGGGCAACAGTGAACACACCTTCCTTGCCCCTTCAGAGTATAGCAGC
GTTCTCGATTCCCAGCTATCTGGATGTGGTGATGGCTAGGCATCTGGCAG
TCCATAAGGAAGCGAAGAAGGGCGATGTACGTGGAGTGATAACGTATCTA
CACGACAACCCCGGTATCGACCCTGATGTGCTCGACAGTGATGGGAAAAG
TGCTCTTTGGACTGCTTGTCTTCACGGATACTACAGGGTTGCACGGGTGC
TGCTCAGGGGGGGGGCTGACGCTAACCTCAAGTGTGGGCGAAGCAACTCT
ACACCTCTTCAGGCAGCTGCTTCTACTAATAGATGGATCATGTTACGACT
GCTCGTTGAGGCAGGTGCAGATCTCTACGTCAGGACAAAGGAGGGCTTCT
CTGTTCACCACTTTGCGGTACTAGCTGACTCTCCAGACGCACTC
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