mRNA_H-paniculata_contig12205.1401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12205.1401.1
Unique NamemRNA_H-paniculata_contig12205.1401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 138 bits (348), Expect = 4.670e-34
Identity = 103/301 (34.22%), Postives = 150/301 (49.83%), Query Frame = 3
Query:  210 ETSEKVDEFKHNTSRRFRIKDLGSLSRVLGIELRHD-DPMVSYQYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGP-------ISERLQYMQA--HFSLSQYCA*PRHYVRGKNNDHVLERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRK--TVSHVVQYRGRVRCCRRSGKGDGISYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            E++E +DE K     R+++KDLG LS +LGI +  D +      + K       K  G D+   V TP +   K+   DG     + S Y+SMVG L+YA+  TRPDIA  V   S     P       +   L+Y++   + +L   CA          N  ++  S DADWA D++DR+STTG +  L+G A+SW S+K  TV+        V   + + +G  +   LL   G   +  T + EDN+ AI + K    H RTKHI + +H IRE V++    L++  T    ADILTK
Sbjct:   62 ESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCA---------GNKDLIGFS-DADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRR-LLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTK 350          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A1J6HVV2_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6HVV2_NICAT)

HSP 1 Score: 134 bits (337), Expect = 3.200e-32
Identity = 105/298 (35.23%), Postives = 148/298 (49.66%), Query Frame = 3
Query:  228 DEFKHNTSRRFRIKDLGSLSRVLGIEL--RHDDPMVSY-QYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERLQYMQAHFSLSQYCA*PRHY--VRGKNNDHVLERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRK----TVSHV-VQYRGRVRC-CR----RSGKGDGISYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            +EFK   +R F + D+G +S  LGI++  R D   +S  +Y K       K    D C  V TPVE   KI  H G G + N + +KS+VG L Y +  TRPDI YGV   S     P +  L+  +    + +Y      Y  +   + D       D+DWA D++DR STTG+V  L  SA +W S+K    T+S    +Y     C C     RS         LL      ++ +TK+F DNKSAI L K    H R+KHI   +H IR+ +  ++  L+ V++ DQ+ADI TK
Sbjct:  103 EEFKEAMAREFEMTDIGLMSYYLGIQVQQRKDGIFISQGEYAKEIL----KKFEMDNCNPVSTPVECGVKISKH-GDGENVNPTFFKSLVGSLRYLTC-TRPDILYGVGLVSRFMEAPTTSHLKVAKR---ILRYIKDTLDYGILYSSSKDSKFVGYCDSDWAGDIDDRKSTTGFVFFLGNSAFTWNSKKQPIVTLSTCEAEYVAACSCVCHAIWLRS---------LLEELHQPQKDATKIFVDNKSAIELAKNPVFHERSKHIDTRYHFIRDCISNKVVELEHVKSQDQIADIFTK 382          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 132 bits (333), Expect = 8.700e-32
Identity = 88/290 (30.34%), Postives = 140/290 (48.28%), Query Frame = 3
Query:  213 TSEKVDEFKHNTSRRFRIKDLGSLSRVLGIELRHDDPMVSYQYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERLQYMQAHFS-LSQYCA*PRHYVRGKNNDHVLERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRKTVSHVVQYRGRVRCCRRSGKGDGI-SYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            T EK+ + K + + RF++KD+G L  +LG+++  +D  V    P   T    K  G + C+ V TPV+   K+++        N   Y+S VG L+Y S  TRPDI + V+  +       +E    ++  F  L +       Y    N D V     DADWA D+ DR ST+GY  ++NG+A+SW S+K     +           +   + +    LL            ++EDN+SAI + K    H R+KHI + +H +R+ V ++   + +  TG  LAD+ TK
Sbjct:   77 TDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDGKVWIGQPTY-TASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV--GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTK 363          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 137 bits (344), Expect = 9.300e-32
Identity = 88/298 (29.53%), Postives = 142/298 (47.65%), Query Frame = 3
Query:  213 TSEKVDEFKHNTSRRFRIKDLGSLSRVLGIELRHDDPMVSYQYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERLQYMQAHFSLSQYCA*PRHYVRGKNNDHVLERS---------IDADWAEDVEDRNSTTGYVLKLNGSAISWCSRKTVSHVVQYRGRVRCCRRSGKGDGI-SYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            T EK+ + K + + RF++KD+G L  +LG+++  +D  V    P   T    K  G + C+ V TPV+   K+++        N   Y+S VG L+Y S  TRPDI + V+  +     P +E    ++  F           Y++G  N  +L             DADWA D+ DR ST+GY  ++NG+A+SW S+K     +           +   + +    LL            ++EDN+SAI + K    H R+KHI + +H +R+ V ++   + +  TG  LAD+ TK
Sbjct:  966 TDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTY-TASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFR----------YLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTK 1252          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A2K3M8T4_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M8T4_TRIPR)

HSP 1 Score: 132 bits (333), Expect = 1.070e-31
Identity = 96/299 (32.11%), Postives = 149/299 (49.83%), Query Frame = 3
Query:  216 SEKVDEFKHNTSRRFRIKDLGSLSRVLGIELRHDDPMVSYQYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERL-------QYMQAHFSLSQYCA*PRHYVRGKNNDHVLERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRK----TVSHV-VQYRGRVRCCRRSGKGDGISYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            +E  ++FK++  RRF + DLG +   LG+E+  +   +     K A        G + C  V +P+    K L+ D +G+  + + YK +VG LMY    TRPD+A+ +   +     P    L       +Y++   SL  +      Y RG  N+  L+   D+D+A D++DR ST+GY+ KL  SAISW S+K    T+S    ++     C         +   +L   G  +  ST +F DN S+I L K    H R KHI V ++ IR+ V++ I  LK   T DQ+AD++TK
Sbjct:  104 TEMFEDFKYSMKRRFAMTDLGQMRYFLGVEVTQEKYGIFINQQKYAK-EILSRFGMEMCNAVSSPIVPGCK-LSKDENGKQIDVTKYKQIVGCLMYL-LATRPDLAFSICLIARYMDKPTDMHLTAAKRILKYLKGTMSLGIF------YKRG--NELQLQGWTDSDYAGDIDDRRSTSGYIFKLGSSAISWSSKKQPIVTLSTTEAEFVAAASC---------VCQAVLHQLGKAQGKSTVIFCDNSSSIKLSKNPIMHGRMKHIDVRYYFIRDLVKDGILELKHCSTCDQIADVMTK 382          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 134 bits (337), Expect = 1.430e-31
Identity = 99/299 (33.11%), Postives = 146/299 (48.83%), Query Frame = 3
Query:  210 ETSEKVDEFKHNTSRRFRIKDLGSLSRVLGIELRHDDPMVS-YQYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGS-------TSYGGPISERLQYMQAHFSLSQYCA*PRHYVRGKNNDHVLERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRK--TVSHVVQYRGRVRCCRRSGKGDGISYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            E+ E + E K    +++++KD+G LS +LGI +  D    S Y + K       +  G D+   V TP +   K+   DG     N   Y+S+VG L+YA+  TRPDIA  V   S       T++   +   L+Y++   +L+        Y R ++    L    DADWA D +DR STTG +  L G A+SW S+K  TV+        V   + + +   ++  LL   G      T + EDN+ AI + K    H RTKHI + +H IRE V+     L++  T D  ADILTK
Sbjct:  202 ESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALK------YQRSESE--TLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTR-LLSDLGMDAT-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQNGQIQLQYCPTEDMKADILTK 490          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A2Z7CIL3_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CIL3_9LAMI)

HSP 1 Score: 132 bits (332), Expect = 1.440e-31
Identity = 108/351 (30.77%), Postives = 164/351 (46.72%), Query Frame = 3
Query:  135 DGSMARYKARLVAQDFSQVEGEDFF----------------------ETSEKVDEFKHNTSRRFRIKDLGSLSRVLGIELRHDDPMVSYQYPKMATPRGTKNIGSDECRGVPTPVEGKWKI--LAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERLQYMQAHFSLSQYCA*PRHY--VRGKNNDHVLERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRK----TVSHVV-QYRGRVRCC------RRSGKGDGISYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            +G + RYKARLVA+ + Q  G D++                       +S   D+FK   +R F + D+G +S  LGI++R  +  +       A     K      C+ V TP++   K+  +  DG     + + +KS+VG L Y +  TRPDI + V   S     P    +   +    + +Y     +Y      +ND  L+   D+D+A D++DR STTG+V  L  +AISW S+K    T+S    +Y     C       RR          LL+        +TK+F DNKSA++L K    H R+KHI   +H IRE + ++   LK V+T D++ADI TK
Sbjct:   39 NGEVERYKARLVAKGYKQKHGVDYYVKKEDGYFLFVCIYVDDLIFTGNSSRMFDDFKKAMAREFEMSDMGLMSYYLGIQVRQTEENIFVSQEGYAK-EVLKKFNMLNCKPVNTPMQFGTKLSRMKQDGE-EEVDPTTFKSLVGSLRYLTC-TRPDILFAVGIVSRFMENPTESHMMTAKR---ILRYIKGTVNYGIAYSSSNDFKLKGYCDSDFAGDIDDRKSTTGFVFFLGKNAISWSSKKQPIVTLSSCESEYVAATSCTCHAIWLRR----------LLKELHLEEEEATKIFIDNKSAMDLAKNPVFHERSKHIDTRYHFIRECIAKKEVELKHVKTMDKVADIFTK 373          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A090BBM5_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090BBM5_HYAAE)

HSP 1 Score: 130 bits (327), Expect = 1.530e-31
Identity = 100/317 (31.55%), Postives = 147/317 (46.37%), Query Frame = 3
Query:  204 FFETSEKVDEFKHNTSRRFRIKDLGSLSRVLGIEL-RHDDPMVSYQYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERLQ-YMQAHFSLSQYCA*PRHYVR----------GKNNDHVLERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRK-----TVSHVVQYRGR---------VRCCRRSGKGDGISYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            F +T E+V + K      F IKDLG L   LGIE+ R  D  +     +    R  +  G D C+ V TP +   K+              Y+ +VG LMY +  TRPDIA+ V        G +++  + Y ++H++ ++       Y++          G N   +L R  DA+WA D++ R STTGYV  LNGSAISW S++     T S   +Y            +RC             LL+   +    +T +F+DN+  I L K    H RTKHI + +H +RE V   + AL+F  T + +AD  TK
Sbjct:    3 FCKTKEQVVDIKSAIKEEFSIKDLGDLKYCLGIEIHRKRDERIIKMNQRAYIKRLAEKFGVDNCKDVHTPADSNAKLAKMPDEEVFVPKFPYRELVGALMYITTCTRPDIAHAV--------GEVAKYCERYNKSHWTAAKRII---KYLKTTQDMSIVFSGFNKGELL-RFADANWAGDLDTRRSTTGYVFFLNGSAISWNSKRQSTVATSSTEAEYMSLYSATQEAIWLRC-------------LLKDLQYCAEVATTIFQDNQGCIALAKNPVYHSRTKHIDIKFHFLREKVASEVIALEFKPTEEMIADGFTK 294          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A314L8S1_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A314L8S1_NICAT)

HSP 1 Score: 134 bits (337), Expect = 2.150e-31
Identity = 103/298 (34.56%), Postives = 147/298 (49.33%), Query Frame = 3
Query:  228 DEFKHNTSRRFRIKDLGSLSRVLGIEL--RHDDPMVSY-QYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERLQYMQAHFSLSQYCA*PRHY--VRGKNNDHVLERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRKTV-----SHVVQYRGRVRC-CR----RSGKGDGISYGLLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            +EFK   +R F + D+G +S  LGI++  R D+  +S  +Y K       K    D C  V TPVE   KI  H G G + N + +KS+VG L Y +  TRPDI YGV   S     P +  L+  +    + +Y      Y  +   + D       D+DWA D++DR STTG+V  L  SA +W S+K       +   +Y     C C     RS         LL      ++ +TK+F DNKSAI L K    H R+KHI   +H IR+ +  ++  L+ V++ DQ+ADI TK
Sbjct:  251 EEFKEAMAREFEMTDIGLMSYYLGIQVHQRKDEIFISQGEYAKEIL----KKFEMDNCNPVSTPVECGVKISKH-GDGENVNPTFFKSLVGSLRYLTC-TRPDILYGVGLVSRFMEAPTTSHLKVAKR---ILRYIKDTLDYEILYSSSKDSKFVGYCDSDWAGDIDDRKSTTGFVFFLGNSAFTWNSKKQPIVNLSTCEAEYVAACSCVCHAIWLRS---------LLEELHQPQKDATKIFVDNKSAIELAKNPVFHERSKHIDTRYHFIRDCISNKVVELEHVKSQDQIADIFTK 530          
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Match: A0A5N6NB10_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NB10_9ASTR)

HSP 1 Score: 130 bits (328), Expect = 5.060e-31
Identity = 110/317 (34.70%), Postives = 153/317 (48.26%), Query Frame = 3
Query:  150 RYKARLVAQDFSQVEGEDFFETSEKVDEFKHNTSRRFRIKDLGSLSRVLGIELRHDDPMVSYQYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSAYKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERLQYMQAHFSLSQYCA*PR-HYVRGKNNDHV-LERSIDADWAEDVEDRNSTTGYVLKLNGSAISWCSRKTV-----SHVVQYRGRVRCCRRSGKGDGISYG-LLRSTGFGRRGSTKLFEDNKSAINLCKGSDAHCRTKHIGVCWHGIREWVRERIFALKFVQTGDQLADILTK 1076
            R    ++  D   + G+D     E+++  K N    F +KDLG L   LGIE+      +     K          G  +C+ V TP+    K L  +     A+   Y+ +VG L+Y S  TRPDIAY V   S     P S    +M+A   + +Y      H V  K+N H+ ++   DADWA DV DR ST+GY   + G+ ++W S+K       S   ++RG  R     G  + +    LL   GF   GS+KL  DNK+AI + +    H RTKHI V  H I+E +   I  L FVQ+ DQLADILTK
Sbjct:   63 RVTCLIIYVDDMVITGDD----KEEMERLKKNLFAEFEMKDLGRLKYFLGIEVLRSKQGIFLCQKKYILDL-LSETGMIDCKSVETPMTVNHK-LHMELEADLADKERYQRLVGKLIYLSH-TRPDIAYAVGVVSQFMHQPQSA---HMEAVLRIIRYLKGTTGHGVLFKSNGHLEIQAYTDADWAGDVGDRRSTSGYFTLVGGNLVTWRSKKQKVVALSSAESEFRGIAR-----GMAEVLWIRKLLTEIGFPPEGSSKLMCDNKAAIQISENPVQHDRTKHIEVDRHMIKEKLEAGIIELPFVQSKDQLADILTK 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12205.1401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S7JP25_9TELE4.670e-3434.22POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A1J6HVV2_NICAT3.200e-3235.23Retrovirus-related pol polyprotein from transposon... [more]
A0A7D9M6E1_PARCT8.700e-3230.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT9.300e-3229.53Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2K3M8T4_TRIPR1.070e-3132.11Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A6G0HFF8_LARCR1.430e-3133.11Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A2Z7CIL3_9LAMI1.440e-3130.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A090BBM5_HYAAE1.530e-3131.55RxLR effector candidate protein n=1 Tax=Hyaloperon... [more]
A0A314L8S1_NICAT2.150e-3134.56Retrovirus-related pol polyprotein from transposon... [more]
A0A5N6NB10_9ASTR5.060e-3134.70Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12205contigH-paniculata_contig12205:1258..2408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score66.6
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog82508.K1VA87
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,3VGMM@5234,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Exons2
Model size1076
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12205.1401.1prot_H-paniculata_contig12205.1401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12205 1281..1964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.2548633-UTR-H-paniculata_contig12205:1257..12801622928942.2548633-UTR-H-paniculata_contig12205:1257..1280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12205 1258..1280 +
1691480675.0136778-UTR-H-paniculata_contig12205:1257..12801691480675.0136778-UTR-H-paniculata_contig12205:1257..1280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12205 1258..1280 +
1622928942.2973294-UTR-H-paniculata_contig12205:1964..24081622928942.2973294-UTR-H-paniculata_contig12205:1964..2408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12205 1965..2408 +
1691480675.03834-UTR-H-paniculata_contig12205:1964..24081691480675.03834-UTR-H-paniculata_contig12205:1964..2408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12205 1965..2408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928942.2697973-CDS-H-paniculata_contig12205:1280..16991622928942.2697973-CDS-H-paniculata_contig12205:1280..1699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12205 1281..1699 +
1691480675.023142-CDS-H-paniculata_contig12205:1280..16991691480675.023142-CDS-H-paniculata_contig12205:1280..1699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12205 1281..1699 +
1622928942.2838573-CDS-H-paniculata_contig12205:1774..19641622928942.2838573-CDS-H-paniculata_contig12205:1774..1964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12205 1775..1964 +
1691480675.030614-CDS-H-paniculata_contig12205:1774..19641691480675.030614-CDS-H-paniculata_contig12205:1774..1964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12205 1775..1964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12205.1401.1

>prot_H-paniculata_contig12205.1401.1 ID=prot_H-paniculata_contig12205.1401.1|Name=mRNA_H-paniculata_contig12205.1401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
MEGVGEKWDVGKRGPGQATGRVEGDLYQMDFQRQLKEDGSMARYKARLVA
QDFSQVEGEDFFETSEKVDEFKHNTSRRFRIKDLGSLSRVLGIELRHDDP
MVSYQYPKMATPRGTKNIGSDECRGVPTPVEGKWKILAHDGSGRSANSSA
YKSMVGPLMYASRGTRPDIAYGVHPGSTSYGGPISERLQYMQAHFSLSQY
CA*
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mRNA from alignment at H-paniculata_contig12205:1258..2408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12205.1401.1 ID=mRNA_H-paniculata_contig12205.1401.1|Name=mRNA_H-paniculata_contig12205.1401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1151bp|location=Sequence derived from alignment at H-paniculata_contig12205:1258..2408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGCGCGGCAATGGAGGAGGAATGGAGGGCGTCGGTGAAAAATGGGAC GTGGGAAAGCGAGGACCCGGGCAGGCTACCGGTAGGGTAGAAGGCGATCT GTACCAAATGGATTTTCAACGTCAACTGAAGGAGGACGGCAGCATGGCAC GCTACAAAGCGCGACTAGTGGCTCAAGATTTTTCACAGGTGGAGGGTGAA GATTTCTTTGAAACCAGTGAGAAAGTAGACGAATTCAAGCATAACACAAG TCGGCGTTTCAGGATAAAAGACTTGGGCTCCCTCTCGCGTGTCTTGGGAA TAGAACTACGACATGACGACCCAATGGTATCATATCAATATCCCAAGATG GCTACACCACGAGGTACTAAAAATATAGGCTCTGACGAGTGTCGAGGCGT GCCCACCCCTGTAGAGGGAAAATGGAAGATTTTGGCACACGAGTCAACCG ACAAGCCCCCCGAACCAAAAGCACTTGGGACTGTACTGTCGGACATAGGT GCAGGAGTACAAGAAAGCGGCAGTGGGAGAAGTGCCAATTCATCTGCATA CAAAAGCATGGTAGGACCACTCATGTACGCCTCGAGAGGAACTAGACCTG ACATAGCATACGGGGTACACCCGGGTAGCACGTCGTATGGAGGACCCATA TCGGAAAGACTTCAGTACATGCAAGCGCACTTTTCGTTATCTCAGTACTG TGCCTGACCTCGGCATTACGTTCGGGGTAAGAATAATGATCACGTTCTGG AAAGATCCATTGATGCTGATTGGGCGGAAGATGTCGAGGACCGAAATTCC ACAACAGGGTACGTACTCAAGCTGAACGGTAGTGCGATAAGTTGGTGCTC TAGGAAGACAGTTAGTCACGTAGTCCAGTACAGAGGCAGAGTACGTTGCT GCAGGAGAAGCGGGAAAGGAGACGGTATATCTTATGGATTACTAAGATCG ACAGGTTTCGGACGCAGGGGGAGCACAAAATTATTTGAGGACAACAAGTC AGCTATCAATCTCTGTAAGGGATCTGACGCACACTGCAGGACAAAACACA TCGGAGTGTGCTGGCACGGAATTCGAGAGTGGGTTCGGGAACGAATATTT GCGTTGAAATTCGTGCAGACCGGCGACCAACTTGCTGACATTTTAACGAA A
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Coding sequence (CDS) from alignment at H-paniculata_contig12205:1258..2408+

>mRNA_H-paniculata_contig12205.1401.1 ID=mRNA_H-paniculata_contig12205.1401.1|Name=mRNA_H-paniculata_contig12205.1401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig12205:1258..2408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGCGTCGGTGAAAAATGGGACGTGGGAAAGCGAGGACCCGGGCA
GGCTACCGGTAGGGTAGAAGGCGATCTGTACCAAATGGATTTTCAACGTC
AACTGAAGGAGGACGGCAGCATGGCACGCTACAAAGCGCGACTAGTGGCT
CAAGATTTTTCACAGGTGGAGGGTGAAGATTTCTTTGAAACCAGTGAGAA
AGTAGACGAATTCAAGCATAACACAAGTCGGCGTTTCAGGATAAAAGACT
TGGGCTCCCTCTCGCGTGTCTTGGGAATAGAACTACGACATGACGACCCA
ATGGTATCATATCAATATCCCAAGATGGCTACACCACGAGGTACTAAAAA
TATAGGCTCTGACGAGTGTCGAGGCGTGCCCACCCCTGTAGAGGGAAAAT
GGAAGATTTTGGCACACGAATGGAGGGCGTCGGTGAAAAATGGGACGTGG
GAAAGCGAGGACCCGGGCAGGCTACCGGTAGGGTAGAAGGCGATCTGTAC
CAAATGGATTTTCAACGTCAACTGAAGGAGGACGGCAGCATGGCACGCTA
CAAAGCGCGACTAGTGGCTCAAGATTTTTCACAGGTGGAGGGTGAAGATT
TCTTTGAAACCAGTGAGAAAGTAGACGAATTCAAGCATAACACAAGTCGG
CGTTTCAGGATAAAAGACTTGGGCTCCCTCTCGCGTGTCTTGGGAATAGA
ACTACGACATGACGACCCAATGGTATCATATCAATATCCCAAGATGGCTA
CACCACGAGGTACTAAAAATATAGGCTCTGACGAGTGTCGAGGCGTGCCC
ACCCCTGTAGAGGGAAAATGGAAGATTTTGGCACACGACGGCAGTGGGAG
AAGTGCCAATTCATCTGCATACAAAAGCATGGTAGGACCACTCATGTACG
CCTCGAGAGGAACTAGACCTGACATAGCATACGGGGTACACCCGGGTAGC
ACGTCGTATGGAGGACCCATATCGGAAAGACTTCAGTACATGCAAGCGCA
CTTTTCGTTATCTCAGTACTGTGCCTGACGGCAGTGGGAGAAGTGCCAAT
TCATCTGCATACAAAAGCATGGTAGGACCACTCATGTACGCCTCGAGAGG
AACTAGACCTGACATAGCATACGGGGTACACCCGGGTAGCACGTCGTATG
GAGGACCCATATCGGAAAGACTTCAGTACATGCAAGCGCACTTTTCGTTA
TCTCAGTACTGTGCCTGA
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