mRNA_H-paniculata_contig12203.1399.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12203.1399.1
Unique NamemRNA_H-paniculata_contig12203.1399.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12203.1399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12203contigH-paniculata_contig12203:1288..1834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size499
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12203.1399.1prot_H-paniculata_contig12203.1399.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12203 1460..1807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.9581373-UTR-H-paniculata_contig12203:1287..14591622928941.9581373-UTR-H-paniculata_contig12203:1287..1459Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12203 1288..1459 -
1691480674.9108758-UTR-H-paniculata_contig12203:1287..14591691480674.9108758-UTR-H-paniculata_contig12203:1287..1459Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12203 1288..1459 -
1622928942.0039065-UTR-H-paniculata_contig12203:1807..18341622928942.0039065-UTR-H-paniculata_contig12203:1807..1834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12203 1808..1834 -
1691480674.9550517-UTR-H-paniculata_contig12203:1807..18341691480674.9550517-UTR-H-paniculata_contig12203:1807..1834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12203 1808..1834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.9692764-CDS-H-paniculata_contig12203:1459..15821622928941.9692764-CDS-H-paniculata_contig12203:1459..1582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12203 1460..1582 -
1691480674.9292774-CDS-H-paniculata_contig12203:1459..15821691480674.9292774-CDS-H-paniculata_contig12203:1459..1582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12203 1460..1582 -
1622928941.9839082-CDS-H-paniculata_contig12203:1630..18071622928941.9839082-CDS-H-paniculata_contig12203:1630..1807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12203 1631..1807 -
1691480674.9437556-CDS-H-paniculata_contig12203:1630..18071691480674.9437556-CDS-H-paniculata_contig12203:1630..1807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12203 1631..1807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12203.1399.1

>prot_H-paniculata_contig12203.1399.1 ID=prot_H-paniculata_contig12203.1399.1|Name=mRNA_H-paniculata_contig12203.1399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MEHMSDKTAFKYYKSAAPGAMVGIADGTSLQVAGFGKLVLSLMKQGSRQI
SATLDSVAHIFLANRSSITLRKHAWELTRMNGSSLTCRRHQGCTRWRQY*
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mRNA from alignment at H-paniculata_contig12203:1288..1834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12203.1399.1 ID=mRNA_H-paniculata_contig12203.1399.1|Name=mRNA_H-paniculata_contig12203.1399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=547bp|location=Sequence derived from alignment at H-paniculata_contig12203:1288..1834- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAAGTGACCTTAGATTCGGGAGCGATGGAACACATGTCGGATAAGAC
GGCGTTCAAATACTACAAGTCTGCGGCACCGGGTGCCATGGTCGGGATAG
CTGACGGCACTTCCTTGCAGGTGGCGGGGTTCGGAAAGCTGGTGCTTTCC
TTAATGAAACAGGGCAGCCGACAAATTAGTGCCACGCTGGACAGTGTTGC
CCATGTACTCGAGGTTGGGCAAAACCTCATCTCGATATGATGGGCCTCTG
AGATATTTTTAGCAAATCGTTCGTCTATCACGCTACGAAAGCATGCTTGG
GAATTGACGAGGATGAATGGCTCGTCTTTAACGTGTCGGCGTCATCAGGG
CTGTACGAGGTGGAGGCAATACTGAGCGCTGTTAGTACAGGGAACGCCTT
TGCCGATGGGATTCGAACACACGACATCATGGAGATTCTCCGGCTACTTG
GACATCCAGACGAGCAGGTAGCGAGAGGAGCTGCGGAGGTGACAGGCGTT
GTGCTGACCGGTGAGGGTGGACCCTGCACAGCGGTCTCCAAGACGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12203:1288..1834-

>mRNA_H-paniculata_contig12203.1399.1 ID=mRNA_H-paniculata_contig12203.1399.1|Name=mRNA_H-paniculata_contig12203.1399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig12203:1288..1834- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACACATGTCGGATAAGACGGCGTTCAAATACTACAAGTCTGCGGC
ACCGGGTGCCATGGTCGGGATAGCTGACGGCACTTCCTTGCAGGTGGCGG
GGTTCGGAAAGCTGGTGCTTTCCTTAATGAAACAGGGCAGCCGACAAATT
AGTGCCACGCTGGACAGTGTTGCCCATATGGAACACATGTCGGATAAGAC
GGCGTTCAAATACTACAAGTCTGCGGCACCGGGTGCCATGGTCGGGATAG
CTGACGGCACTTCCTTGCAGGTGGCGGGGTTCGGAAAGCTGGTGCTTTCC
TTAATGAAACAGGGCAGCCGACAAATTAGTGCCACGCTGGACAGTGTTGC
CCATATATTTTTAGCAAATCGTTCGTCTATCACGCTACGAAAGCATGCTT
GGGAATTGACGAGGATGAATGGCTCGTCTTTAACGTGTCGGCGTCATCAG
GGCTGTACGAGGTGGAGGCAATACTGAATATTTTTAGCAAATCGTTCGTC
TATCACGCTACGAAAGCATGCTTGGGAATTGACGAGGATGAATGGCTCGT
CTTTAACGTGTCGGCGTCATCAGGGCTGTACGAGGTGGAGGCAATACTGA
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