mRNA_H-paniculata_contig12186.1385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12186.1385.1
Unique NamemRNA_H-paniculata_contig12186.1385.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12186.1385.1 vs. uniprot
Match: A0A6H5JMJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.710e-25
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   52 MVETWISLVRNMACVLKSILPEHYAVMQPLMSFPLAFLVGSSSGTAVKLEHFTGLDGLIGVLQLAGAAFNLIKGAK 279
            M E WISL+RN ACVLKS+LP  Y VMQPLM+FP  F + SS G A KLE FTGL+GLIGVLQLAGA FNL KGAK
Sbjct:    1 MAELWISLIRNAACVLKSLLPAEYTVMQPLMAFP--FPLFSSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAK 74
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BLAST of mRNA_H-paniculata_contig12186.1385.1 vs. uniprot
Match: D7FPX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPX9_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.140e-22
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   52 MVETWISLVRNMACVLKSILPEHYAVMQPLMSFPLAFLVGSSSGTAVKLEHFTGLDGLIGVLQLAGAAFNLIKGAK 279
            MVE WISL+RN ACVLKS+LP  Y +MQPLM+FP  F +  S G A KLE FTGL+GLIGVLQLAGA FNL KGAK
Sbjct:    1 MVELWISLIRNAACVLKSLLPAEYTMMQPLMAFP--FPLFWSGGGAGKLEMFTGLEGLIGVLQLAGAGFNLCKGAK 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12186.1385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMJ7_9PHAE1.710e-2572.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPX9_ECTSI1.140e-2271.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12186contigH-paniculata_contig12186:5944..6645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue5.6e-20
Seed eggNOG ortholog2880.D7FPX9
Hectar predicted targeting categoryother localisation
EggNOG OGs2E7I2@1,2SE3V@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_008250.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size702
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12186.1385.1prot_H-paniculata_contig12186.1385.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12186 5995..6231 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.6557603-UTR-H-paniculata_contig12186:5943..59941622928937.6557603-UTR-H-paniculata_contig12186:5943..5994Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12186 5944..5994 +
1691480673.9750807-UTR-H-paniculata_contig12186:5943..59941691480673.9750807-UTR-H-paniculata_contig12186:5943..5994Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12186 5944..5994 +
1622928937.6804216-UTR-H-paniculata_contig12186:6231..66451622928937.6804216-UTR-H-paniculata_contig12186:6231..6645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12186 6232..6645 +
1691480673.9921026-UTR-H-paniculata_contig12186:6231..66451691480673.9921026-UTR-H-paniculata_contig12186:6231..6645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12186 6232..6645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.669855-CDS-H-paniculata_contig12186:5994..62311622928937.669855-CDS-H-paniculata_contig12186:5994..6231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12186 5995..6231 +
1691480673.9837947-CDS-H-paniculata_contig12186:5994..62311691480673.9837947-CDS-H-paniculata_contig12186:5994..6231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12186 5995..6231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12186.1385.1

>prot_H-paniculata_contig12186.1385.1 ID=prot_H-paniculata_contig12186.1385.1|Name=mRNA_H-paniculata_contig12186.1385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MVETWISLVRNMACVLKSILPEHYAVMQPLMSFPLAFLVGSSSGTAVKLE
HFTGLDGLIGVLQLAGAAFNLIKGAKVL*
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mRNA from alignment at H-paniculata_contig12186:5944..6645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12186.1385.1 ID=mRNA_H-paniculata_contig12186.1385.1|Name=mRNA_H-paniculata_contig12186.1385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=702bp|location=Sequence derived from alignment at H-paniculata_contig12186:5944..6645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAATTGTGTTAAAACGTTTGGAGTGCATCTTACAGACAGAGCCAGGAG
GATGGTAGAGACGTGGATATCGCTCGTTCGCAACATGGCGTGCGTACTCA
AGAGTATCTTGCCCGAACATTATGCAGTTATGCAGCCTCTCATGTCGTTC
CCGTTAGCATTTTTGGTCGGCAGCAGTAGCGGAACAGCGGTTAAGCTCGA
GCACTTCACAGGATTGGACGGACTCATCGGCGTGTTACAGCTGGCAGGGG
CTGCCTTTAACCTCATCAAGGGGGCCAAGGTGTTATGATTATCAATGCAT
TGCCATTGTTTGCTGTAAAAGAGATGATGCTTGTTGCAGTGGCTTTGTTA
CGGGGCGCCAGCCACCCAGACCTGAAGTAGAAAAGCTGCTATTTGATAGT
TAGGGTGGATGGGTGTGTGTTTATGTGTGTTGGGAGCATGGAGGTGTTTT
TCAGCGTATCTGAGAAGGCATCAGGCACCACGAAGTGACACCGGTCAACT
GGTGCCCCAAACCAGGTGCTGGATCACAGGTGACTCAGGCTATGGAATAT
GTATTGTCTATGTTCAAATCTCAGCGAAGAGGTGATGATGAAGAGCATAT
ACAACACGCTTATATTTTATTGAGTAGGTCGAGATGGTTGAGGTTTCTGC
CAAGACCGACGAACCGTAACGATTCATGTACGAGTGGTGCTCATAGGATA
AT
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Coding sequence (CDS) from alignment at H-paniculata_contig12186:5944..6645+

>mRNA_H-paniculata_contig12186.1385.1 ID=mRNA_H-paniculata_contig12186.1385.1|Name=mRNA_H-paniculata_contig12186.1385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig12186:5944..6645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGAGACGTGGATATCGCTCGTTCGCAACATGGCGTGCGTACTCAA
GAGTATCTTGCCCGAACATTATGCAGTTATGCAGCCTCTCATGTCGTTCC
CGTTAGCATTTTTGGTCGGCAGCAGTAGCGGAACAGCGGTTAAGCTCGAG
CACTTCACAGGATTGGACGGACTCATCGGCGTGTTACAGCTGGCAGGGGC
TGCCTTTAACCTCATCAAGGGGGCCAAGGTGTTATGAATGGTAGAGACGT
GGATATCGCTCGTTCGCAACATGGCGTGCGTACTCAAGAGTATCTTGCCC
GAACATTATGCAGTTATGCAGCCTCTCATGTCGTTCCCGTTAGCATTTTT
GGTCGGCAGCAGTAGCGGAACAGCGGTTAAGCTCGAGCACTTCACAGGAT
TGGACGGACTCATCGGCGTGTTACAGCTGGCAGGGGCTGCCTTTAACCTC
ATCAAGGGGGCCAAGGTGTTATGA
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