mRNA_H-paniculata_contig12186.1383.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12186.1383.1
Unique NamemRNA_H-paniculata_contig12186.1383.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: D7FPX7_ECTSI (Dynein light chain flagellar outer dynein arm light chain LC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPX7_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 4.870e-62
Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNEREAANPEAGA 330
            IEKLDDVA+SLEELWISYNQ+T LDGLSNL NLTRLYMSNNS+K+W ELDKLT L+ LTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKP ER+AANPEA A
Sbjct:   82 IEKLDDVAESLEELWISYNQVTTLDGLSNLSNLTRLYMSNNSVKSWAELDKLTGLEELTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPTERDAANPEAVA 191
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: A0A835Z550_9STRA (Dynein light chain flagellar outer dynein arm light chain LC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z550_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.050e-46
Identity = 76/108 (70.37%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNEREAANPEA 324
            IEKL+DVAD+LEELW+SYNQIT+L+GL  L +LT LY+SNN+IK+W ELD+L  L  L DV F+GNPIY  MS+EDAR+EVLRH+PQV+KIDGDMV+P+EREAA  EA
Sbjct:   82 IEKLEDVADTLEELWLSYNQITSLEGLGALASLTTLYVSNNNIKSWAELDRLQALTHLRDVTFVGNPIYGEMSREDARVEVLRHVPQVAKIDGDMVRPSEREAAGLEA 189
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: K3WAN9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAN9_GLOUD)

HSP 1 Score: 149 bits (376), Expect = 2.040e-44
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNEREAA 312
            IEKLDDV+D+LEELWISYN +  LDGLS L NLT LY+SNN IK+W ELDKL  L  L DVLF+GNPIYE MSKE+ R+ VL+ IP+V+KIDGDMVK  ER+AA
Sbjct:   17 IEKLDDVSDTLEELWISYNVVATLDGLSGLTNLTTLYVSNNLIKSWDELDKLANLPKLRDVLFVGNPIYENMSKEEQRLNVLKRIPKVAKIDGDMVKQTERDAA 120
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: A0A812XNK2_SYMMI (LC1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XNK2_SYMMI)

HSP 1 Score: 151 bits (381), Expect = 2.900e-44
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNEREAA 312
            IEKLDDVA +LEELW+SYNQI +LDG++ L NL  LY+SNN IKNW ELDKL  L  L DVLF+GNPIY+ MS+E ARIEVL+ IPQV+KIDGDMVKP ERE A
Sbjct:   83 IEKLDDVASTLEELWVSYNQINSLDGVNVLTNLAVLYISNNLIKNWAELDKLAGLPNLRDVLFVGNPIYDDMSREQARIEVLKRIPQVAKIDGDMVKPAERELA 186
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: A0A7S2SA92_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SA92_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.290e-42
Identity = 67/104 (64.42%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNEREAA 312
            IEKLD++A SL+ELW+SYNQI  LDG+++L NLT LY+SNN I  W+ELDKLT L  L D+L +GNPIYEG+ + D RI+VL+HIP + KIDGDM+KP+ERE A
Sbjct:   92 IEKLDELAGSLQELWLSYNQIKTLDGVASLENLTTLYLSNNLISEWSELDKLTSLPQLKDILLLGNPIYEGLEEHDRRIQVLQHIPGLMKIDGDMIKPSEREEA 195
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: A0A7S3K2Z4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2Z4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.490e-39
Identity = 66/109 (60.55%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNEREAANPEAG 327
            IE+LDD+A++LEELWISYNQI++LDGLS+L NLT L++SNN+IKN+ EL+KL  L  L DVLF GNP+YEG+S ++ARIEVL+ +P ++KIDG MV  ++R+ A    G
Sbjct:   84 IERLDDLAENLEELWISYNQISSLDGLSSLTNLTTLFISNNAIKNFAELEKLACLPNLKDVLFYGNPMYEGLSAQEARIEVLKRLPNIAKIDGSMVLQSDRDEAASSGG 192
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: B8C6D5_THAPS (Leucine-rich repeat protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6D5_THAPS)

HSP 1 Score: 132 bits (332), Expect = 8.610e-37
Identity = 66/105 (62.86%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIY-EGMSKEDARIEVLRHIPQVSKIDGDMVKPNEREAA 312
            IEKL+DVA SL++LWISYNQI++LDGL+ +  LT LY SNN IK+++ELDKL   + L DVLF+GNP+Y E  +KE+ARIE+LRH+P + KIDG+ VKP+E EAA
Sbjct:   85 IEKLEDVASSLQQLWISYNQISSLDGLACVTGLTTLYCSNNLIKSFSELDKLKANEQLRDVLFIGNPMYSEVATKEEARIEILRHLPNLKKIDGEFVKPSELEAA 189
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: F0Y145_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y145_AURAN)

HSP 1 Score: 132 bits (332), Expect = 8.850e-37
Identity = 62/104 (59.62%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNEREAA 312
            IEKLDD+ DSLEELWISYNQI+AL+GL  +  LT LYMSNN++KN+ EL+K+  L  L DVLF+GNP+YEG++  ++RIE+LR +P ++KIDG MV   +R+ A
Sbjct:   87 IEKLDDLGDSLEELWISYNQISALEGLHAMTKLTTLYMSNNNLKNFAELEKIAGLPNLKDVLFVGNPMYEGLTAAESRIEILRRLPNLAKIDGSMVLQRDRDEA 190
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: A0A812SAF9_9DINO (LC1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812SAF9_9DINO)

HSP 1 Score: 115 bits (288), Expect = 1.510e-30
Identity = 53/102 (51.96%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNERE 306
            I  L+++  +L+ELWISYNQI+ALDGL+    LT L++SNN IK+W ELDKL     LT+VLF GNPIYEG++K+ AR +VL H+P+++ +DG+++  ++ E
Sbjct:   53 ISGLEEIGSTLKELWISYNQISALDGLAPCVKLTTLFISNNKIKDWPELDKLQANQDLTNVLFYGNPIYEGLTKKQARPKVLEHLPKIATLDGELLTGDDDE 154
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BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Match: A0A812V4V3_9DINO (LC1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V4V3_9DINO)

HSP 1 Score: 115 bits (287), Expect = 6.480e-29
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:    1 IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELDKLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNERE 306
            I  L+++  +L ELWISYNQIT LDGL+    LT L++SNN IK+W ELDKL     LT+VLF GNPIYEG++K+ AR +VL H+P+++ +DG+++  ++ E
Sbjct:  197 ISGLEEIGSTLRELWISYNQITTLDGLAPCVKLTTLFISNNKIKDWPELDKLQANQDLTNVLFYGNPIYEGLTKKQARPKVLEHLPKIATLDGELLTGDDDE 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12186.1383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPX7_ECTSI4.870e-6288.18Dynein light chain flagellar outer dynein arm ligh... [more]
A0A835Z550_9STRA1.050e-4670.37Dynein light chain flagellar outer dynein arm ligh... [more]
K3WAN9_GLOUD2.040e-4470.19Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A812XNK2_SYMMI2.900e-4472.12LC1 protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A7S2SA92_9STRA7.290e-4264.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3K2Z4_9STRA4.490e-3960.55Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B8C6D5_THAPS8.610e-3762.86Leucine-rich repeat protein n=1 Tax=Thalassiosira ... [more]
F0Y145_AURAN8.850e-3759.62Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A812SAF9_9DINO1.510e-3051.96LC1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]
A0A812V4V3_9DINO6.480e-2951.96LC1 protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12186contigH-paniculata_contig12186:346..1332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue8.1e-49
Seed eggNOG ortholog2880.D7FPX7
Preferred nameDNAL1
KEGG rclassRC00004,RC00014
KEGG koko:K01068,ko:K10411
KEGG ReactionR01274,R08174,R08175,R08176,R08177,R08178,R08179,R08180,R08181,R08182,R08183,R09450
KEGG Pathwayko00062,ko01040,ko01100,ko01110,ko05016,map00062,map01040,map01100,map01110,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036157,GO:0036158,GO:0042623,GO:0042995,GO:0043014,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045504,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Ec32 ortholog descriptionDynein light chain flagellar outer dynein arm light chain LC1
Ec32 orthologEc-01_008270.1
EC3.1.2.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko04812
Exons2
Model size333
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.532632-CDS-H-paniculata_contig12186:345..5011622928937.532632-CDS-H-paniculata_contig12186:345..501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12186 346..501 +
1691480673.9078-CDS-H-paniculata_contig12186:345..5011691480673.9078-CDS-H-paniculata_contig12186:345..501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12186 346..501 +
1622928937.5444815-CDS-H-paniculata_contig12186:1155..13321622928937.5444815-CDS-H-paniculata_contig12186:1155..1332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12186 1156..1332 +
1691480673.920309-CDS-H-paniculata_contig12186:1155..13321691480673.920309-CDS-H-paniculata_contig12186:1155..1332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12186 1156..1332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12186.1383.1prot_H-paniculata_contig12186.1383.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12186 346..1332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12186.1383.1

>prot_H-paniculata_contig12186.1383.1 ID=prot_H-paniculata_contig12186.1383.1|Name=mRNA_H-paniculata_contig12186.1383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
IEKLDDVADSLEELWISYNQITALDGLSNLPNLTRLYMSNNSIKNWTELD
KLTPLDMLTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPNE
REAANPEAGA*
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mRNA from alignment at H-paniculata_contig12186:346..1332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12186.1383.1 ID=mRNA_H-paniculata_contig12186.1383.1|Name=mRNA_H-paniculata_contig12186.1383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=987bp|location=Sequence derived from alignment at H-paniculata_contig12186:346..1332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAGAAGCTCGACGACGTCGCGGATTCCTTGGAGGAGCTGTGGATCTC
TTACAACCAGATCACAGCGTTGGATGGTCTCTCCAATCTGCCAAACCTCA
CTCGCTTGTATATGTCCAACAACTCCATCAAGAATTGGACGGAGCTTGAT
AAGCTGGTAAACTTCCACTTTTGAAAACACAACCGAAGATAAAACTGTAG
CCCATCACATTTTTTCAGCCCGACATTCGTTGCCGTTTCTGTGTCCCTAA
AAGTGCTGCGTTCCCGCGCCCGCACCTCAGAACTAGCCGTGGAGTCGGTC
AACGATCGAGGCGCGAATAATGTTTGATGCACAAATTTCCCCGAGGGGTG
GAGAAACCTACATTCCCTCCACGGGGACATCACTGTACCATACCCTGCCC
AACACCGTGGGACGACATTTTGTGCATATATCCTACCAGACAGTGACGCC
GATGGGACTTATAGACGGGATACTAAACCAAACTTCCTAGGGTATATTAT
GTAGAAGTCAGCCGACACTTGGTTCATTTCGATCCCCCTTGATTGTTTAA
AGACTCCGTCAGCATTGGAATAAGCAGTGTGTTTCCTTTATTATTATCCA
GGCCCTCCTACCCGTAAAAAAAATCCTAATGTTGGACACCGAAAACAGAG
CAAGTTCAGGAGCGAGGACGGGTAAGGGTGCACCACTGTGGAAAGGGTGA
GAAATATCGGACACTATTCCTCTCCAAACTCAATTACATCCGCCTCATAT
ATATACTTTTGGATCGTATTCCATTACAATTGTGTGGTCTTTCGTTTTTT
CGCACCACAGACGCCGTTGGACATGCTGACCGACGTGCTATTCATGGGGA
ATCCGATCTACGAGGGGATGTCGAAAGAAGACGCACGAATAGAGGTGTTA
CGACACATACCCCAAGTTAGCAAGATCGACGGGGATATGGTCAAGCCGAA
CGAGCGGGAAGCAGCTAACCCGGAGGCTGGCGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12186:346..1332+

>mRNA_H-paniculata_contig12186.1383.1 ID=mRNA_H-paniculata_contig12186.1383.1|Name=mRNA_H-paniculata_contig12186.1383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig12186:346..1332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAGAAGCTCGACGACGTCGCGGATTCCTTGGAGGAGCTGTGGATCTC
TTACAACCAGATCACAGCGTTGGATGGTCTCTCCAATCTGCCAAACCTCA
CTCGCTTGTATATGTCCAACAACTCCATCAAGAATTGGACGGAGCTTGAT
AAGCTGATCGAGAAGCTCGACGACGTCGCGGATTCCTTGGAGGAGCTGTG
GATCTCTTACAACCAGATCACAGCGTTGGATGGTCTCTCCAATCTGCCAA
ACCTCACTCGCTTGTATATGTCCAACAACTCCATCAAGAATTGGACGGAG
CTTGATAAGCTGACGCCGTTGGACATGCTGACCGACGTGCTATTCATGGG
GAATCCGATCTACGAGGGGATGTCGAAAGAAGACGCACGAATAGAGGTGT
TACGACACATACCCCAAGTTAGCAAGATCGACGGGGATATGGTCAAGCCG
AACGAGCGGGAAGCAGCTAACCCGGAGGCTGGCGCATGAACGCCGTTGGA
CATGCTGACCGACGTGCTATTCATGGGGAATCCGATCTACGAGGGGATGT
CGAAAGAAGACGCACGAATAGAGGTGTTACGACACATACCCCAAGTTAGC
AAGATCGACGGGGATATGGTCAAGCCGAACGAGCGGGAAGCAGCTAACCC
GGAGGCTGGCGCATGA
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