mRNA_H-paniculata_contig12182.1382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12182.1382.1
Unique NamemRNA_H-paniculata_contig12182.1382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12182.1382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12182contigH-paniculata_contig12182:718..2544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionG-protein gamma-like domain
Ec32 orthologEc-02_005920.1
Exons2
Model size261
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12182.1382.1prot_H-paniculata_contig12182.1382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12182 718..2502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.4718003-CDS-H-paniculata_contig12182:717..8551622928937.4718003-CDS-H-paniculata_contig12182:717..855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12182 718..855 -
1691480673.881775-CDS-H-paniculata_contig12182:717..8551691480673.881775-CDS-H-paniculata_contig12182:717..855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12182 718..855 -
1622928937.4830964-CDS-H-paniculata_contig12182:2421..25021622928937.4830964-CDS-H-paniculata_contig12182:2421..2502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12182 2422..2502 -
1691480673.8920746-CDS-H-paniculata_contig12182:2421..25021691480673.8920746-CDS-H-paniculata_contig12182:2421..2502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12182 2422..2502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.4950733-UTR-H-paniculata_contig12182:2502..25441622928937.4950733-UTR-H-paniculata_contig12182:2502..2544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12182 2503..2544 -
1691480673.899424-UTR-H-paniculata_contig12182:2502..25441691480673.899424-UTR-H-paniculata_contig12182:2502..2544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12182 2503..2544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12182.1382.1

>prot_H-paniculata_contig12182.1382.1 ID=prot_H-paniculata_contig12182.1382.1|Name=mRNA_H-paniculata_contig12182.1382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MSETTLQKVENEVQKLTAELQSIEQAQQMYSTAFDNMLGYVAETPEPFSS
APPEPNSWHANVGSAGSCCVLS*
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mRNA from alignment at H-paniculata_contig12182:718..2544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12182.1382.1 ID=mRNA_H-paniculata_contig12182.1382.1|Name=mRNA_H-paniculata_contig12182.1382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1827bp|location=Sequence derived from alignment at H-paniculata_contig12182:718..2544- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACGGCGCGTGCACGCAGCGTCGGGTGCAGTAGGCTTAGTTATGTCCGA
GACGACACTTCAAAAGGTGGAAAACGAAGTCCAAAAACTGACGGCCGAGT
TGCAAAGCATCGAACAGGCGCAGGTGAATAATTTCTTCTTCGGCAGGGGG
GGGGAGGAAACCAACCGGCCTCTCCGCGCGCCGTGTAGTGGTAGGGAGAG
GGTACCAGGGCGGCGGGGCATGGATAATGACGAGGGAGGACGAGGGTGGC
AGGCGTGTTTCGACTCGTATACTCGTACACCCCCCTCCCCCCCCCCCTCC
CCCTCCTTTTTACCTTGTGCTGCAGCGAGAAAAAAATGCTGCTCGAAGAG
AATCGGGATGTTATCAATTATTCCCGCTTTTCAAACCGGCAATAGATACC
GTCATTAGACAATTTCGGAAACGATCCACAAGAAATCTAGATCCCAACGA
TAAAAAGCTGGTAGCAGGACATTTGAGCCACGAAAAAAAAAAACGGTGGC
CCGAAACGTCAGTAGCCTACCAATTTTGTCGGCAACGAATCTGTGTGTTC
TAGTGATGATTCGAAAATTTCATTGCCAAGAAATAGACACAAAGGACACT
CCCCGACCATGAGAGCACCGGAATACGGTAGAGACACCTGAGATCAAGTC
AATCGGAGCGCAAAAGCCTTGGATCACTCAATACACAACTCGACGTCAAC
CCAAGAAATAAATAGGAAGGCATAAAACGTTTGTTTTATTTCCTAGGCCA
GTCGTCTCCAGTCGTCTGACGGGTGTGCCTCGCAGATTCGGTGCCCGTGC
TGTAGGCGGTGTGTGCATTTCCTAACTTTGTCTGGTTTGATTTTTTTGGG
ATATACCCTAAAGTATGATAAGCCGAACAGAGATGGACAGGTAAGAAGCG
CAGGCAGGCAGCGGGTGTCATGGATCATGCACGATGGACCATTGTTTATC
CAAGTACCATAGTAGGCATTGCACAAGACTGCTATTGTAGTCCCGAGGAC
GTCGGGTGGCGGCACGTTCCTGGGGTTCCTGAACCCCGGCCCCCTACACA
ATGACTAGATGTATTTTGTCCCTTTCTCGGAACAGCTTTCTAGCTGTCCA
AATCCCGGATGGGGAGTCCATCAACGACAGAACAAAACCCAAGTGCTTGC
TCCGCATTACATCGCAAGACCTAGAACTGATCCGCATAGAGCAGGCGTTG
TTCCCTCGGGAGCCAATCTCTCCCCGGAGCATCCTTTTTACAATATCGTT
GTTGATAGGACCCCTGACCACGGCATCTGAAGTTTGTGAGTTCGAACCCG
ACCATGATCACCGAAGAAAGAAGTTCGCAATCTAACAGACCGCAAAAAAT
ATGGAACATAGGCTAAAATTCCACACACACCTCTAGTAAGACAATCGCAA
GGAGAGGGAACATTGTGATCAAAGAAGGAGTAAGAGTGTTCACCGCCAGC
CGGCGAAACTGGTTACCCCTAGTAGACACTTGCAAAATATCAAAGAGCCT
GATAAAGGGGGGGAGTGAGGTGAAGAGTACCCTATAGAAGGGGGGGGTAA
TTCCCACCGGAATCCGTAGAGGATAGAACACCTCTTTCACAATCCGGGAG
CATCATGTTCTCATTTTCAACATGTTTTTTTATTTCCTTCAATGGGGGTT
GGCATATATTTTTTCCCCTCGTATATATTTTCGCATGAGCAGATGTACTC
CACGGCGTTCGATAACATGCTGGGGTATGTGGCGGAAACCCCAGAGCCGT
TCTCATCAGCACCACCGGAGCCCAACTCCTGGCACGCGAACGTTGGCAGT
GCTGGTAGCTGCTGCGTGCTGTCGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12182:718..2544-

>mRNA_H-paniculata_contig12182.1382.1 ID=mRNA_H-paniculata_contig12182.1382.1|Name=mRNA_H-paniculata_contig12182.1382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig12182:718..2544- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGAGACGACACTTCAAAAGGTGGAAAACGAAGTCCAAAAACTGAC
GGCCGAGTTGCAAAGCATCGAACAGGCGCAGATGTCCGAGACGACACTTC
AAAAGGTGGAAAACGAAGTCCAAAAACTGACGGCCGAGTTGCAAAGCATC
GAACAGGCGCAGCAGATGTACTCCACGGCGTTCGATAACATGCTGGGGTA
TGTGGCGGAAACCCCAGAGCCGTTCTCATCAGCACCACCGGAGCCCAACT
CCTGGCACGCGAACGTTGGCAGTGCTGGTAGCTGCTGCGTGCTGTCGTAA
CAGATGTACTCCACGGCGTTCGATAACATGCTGGGGTATGTGGCGGAAAC
CCCAGAGCCGTTCTCATCAGCACCACCGGAGCCCAACTCCTGGCACGCGA
ACGTTGGCAGTGCTGGTAGCTGCTGCGTGCTGTCGTAA
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