mRNA_H-paniculata_contig12132.1353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: D7FY40_ECTSI (GTP cyclohydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY40_ECTSI) HSP 1 Score: 182 bits (461), Expect = 9.970e-56 Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = 1
Query: 4 DDDADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
DDD RL+KM+ AC+TLLECLGED SREGLVKTP RMAKALLACTRGYSQSL IVN+AVFEEDHHEMILVKDI+IHSLCEHH+VPFTGKVHIAYIPRSK+
Sbjct: 66 DDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKI 166
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: A0A5D6XFH5_9STRA (GTP cyclohydrolase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFH5_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.560e-43 Identity = 70/100 (70.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query: 7 DDADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
DD ++LEKM AA LLEC+GEDT+REGLVKTP RMAKALL T+GY QSL ++NDAVF EDH EM++V+DID++S+CEHH+VPFTGKVHI YIP KV
Sbjct: 51 DDTEKLEKMAAAVKVLLECIGEDTAREGLVKTPMRMAKALLYNTKGYGQSLADVLNDAVFAEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKV 150
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: A0A3R7FZY1_9STRA (GTP cyclohydrolase 1 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FZY1_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.710e-43 Identity = 69/100 (69.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query: 7 DDADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
+D ++LEKM AA TLLEC+GEDT REGLVKTP RMAKA+L T+GY QSL ++N+AVFEEDH EM++V+DID++S+CEHH+VPFTGKVHI YIP KV
Sbjct: 67 EDKEKLEKMAAAVTTLLECIGEDTQREGLVKTPMRMAKAMLYNTKGYGQSLTDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKV 166
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: A0A0P1B1V7_PLAHL (GTP cyclohydrolase 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1V7_PLAHL) HSP 1 Score: 150 bits (378), Expect = 2.680e-43 Identity = 71/100 (71.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query: 7 DDADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
DD +LEKM AA TLLEC+GED REGLVKTP RMAKALL T+GYSQSL ++N+AVFEEDH EM++V+DID++S+CEHH+VPFTGKVHI YIP KV
Sbjct: 58 DDKAKLEKMAAAVTTLLECIGEDPHREGLVKTPMRMAKALLYNTKGYSQSLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKV 157
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: D0NDK8_PHYIT (GTP cyclohydrolase 1 n=13 Tax=Phytophthora TaxID=4783 RepID=D0NDK8_PHYIT) HSP 1 Score: 149 bits (377), Expect = 3.800e-43 Identity = 69/100 (69.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query: 7 DDADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
+D ++LEKM AA TLLEC+GED REGLVKTP RMAKALL T+GY QSL ++N+AVFEEDH EM++V+DID++S+CEHH+VPFTGKVHI YIP KV
Sbjct: 58 EDKEKLEKMAAAVTTLLECIGEDPQREGLVKTPMRMAKALLYNTKGYGQSLSDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKV 157
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: H3G797_PHYRM (GTP cyclohydrolase 1 n=2 Tax=Phytophthora TaxID=4783 RepID=H3G797_PHYRM) HSP 1 Score: 147 bits (372), Expect = 6.460e-43 Identity = 71/105 (67.62%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 1 PDD---DADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
PDD D ++L+KM AA TLLEC+GED REGLVKTP RMAKALL T+GY QSL ++N+AVFEEDH EM++V+DID++S+CEHH+VPFTGKVHI YIP KV
Sbjct: 13 PDDHVQDQEKLKKMAAAVTTLLECIGEDPRREGLVKTPMRMAKALLYNTKGYGQSLRDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKV 117
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: K3W5D0_GLOUD (GTP cyclohydrolase 1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5D0_GLOUD) HSP 1 Score: 147 bits (371), Expect = 4.330e-42 Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 1
Query: 1 PDD---DADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
PDD D +LEKM AA LLEC+GEDT REGLVKTP RMAKA+L T+GY QSL ++NDAVFEEDH EM++V+DID++S+CEHH+VPF GKVHI YIP KV
Sbjct: 66 PDDYVEDKAKLEKMAAAVKVLLECIGEDTEREGLVKTPMRMAKAMLYNTKGYGQSLSDVLNDAVFEEDHDEMVIVRDIDLYSMCEHHMVPFMGKVHIGYIPNGKV 170
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: A0A484DTW1_BRELC (GTP cyclohydrolase 1 n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTW1_BRELC) HSP 1 Score: 147 bits (370), Expect = 4.810e-42 Identity = 68/101 (67.33%), Postives = 84/101 (83.17%), Query Frame = 1
Query: 4 DDDADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
D D ++LEKM A TLLEC+GED +REGLVKTP RMAKALL T+GY Q+L ++N+AVFEEDH EM++V+DID++S+CEHH+VPFTGKVHI YIP KV
Sbjct: 61 DKDQEKLEKMAGAVITLLECIGEDPTREGLVKTPMRMAKALLYNTKGYGQTLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKV 161
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: A0A662Y7Q1_9STRA (GTP cyclohydrolase 1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7Q1_9STRA) HSP 1 Score: 148 bits (373), Expect = 4.930e-42 Identity = 68/100 (68.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query: 7 DDADRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
+D ++LEKM AA TLLEC+GED REGLVKTP RMAKA+L T+GY QSL ++N+AVFEEDH EM++V+DID++S+CEHH+VPFTGKVHI YIP KV
Sbjct: 103 EDTEKLEKMAAAVKTLLECIGEDPQREGLVKTPMRMAKAMLYNTKGYGQSLTEVLNEAVFEEDHDEMVVVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKV 202
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Match: A0A835YJ24_9STRA (GTP cyclohydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ24_9STRA) HSP 1 Score: 146 bits (368), Expect = 7.360e-42 Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = 1
Query: 16 DRLEKMEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAVFEEDHHEMILVKDIDIHSLCEHHIVPFTGKVHIAYIPRSKV 306
+RL M AA +TLL C+GED +REGLV+TP RMA+ALL CT+GY + LD ++N A+FEE HHEMILVKDID++S+CEHH+VPF G+ HIAYIPRSKV
Sbjct: 54 ERLATMTAAVSTLLTCMGEDPTREGLVRTPYRMARALLDCTKGYEKRLDDVINGAIFEEHHHEMILVKDIDVYSMCEHHLVPFYGRAHIAYIPRSKV 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12132.1353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12132.1353.1 >prot_H-paniculata_contig12132.1353.1 ID=prot_H-paniculata_contig12132.1353.1|Name=mRNA_H-paniculata_contig12132.1353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp MEAACATLLECLGEDTSREGLVKTPQRMAKALLACTRGYSQSLDSIVNDAback to top mRNA from alignment at H-paniculata_contig12132:1405..1710+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12132.1353.1 ID=mRNA_H-paniculata_contig12132.1353.1|Name=mRNA_H-paniculata_contig12132.1353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig12132:1405..1710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12132:1405..1710+ >mRNA_H-paniculata_contig12132.1353.1 ID=mRNA_H-paniculata_contig12132.1353.1|Name=mRNA_H-paniculata_contig12132.1353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig12132:1405..1710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |