mRNA_H-paniculata_contig12131.1352.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12131.1352.1
Unique NamemRNA_H-paniculata_contig12131.1352.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: A0A6H5JTW4_9PHAE (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW4_9PHAE)

HSP 1 Score: 442 bits (1137), Expect = 7.340e-150
Identity = 224/371 (60.38%), Postives = 273/371 (73.58%), Query Frame = 1
Query:    1 AESKAPGLVPVAQGLSHSLHPDFFLREIKGSLDRLQGAPIAGYLVDHPEANLAAKLGLTGVSSGGGI-DGAGTIEPTIVQPTKARLDDARSALYEEMVELFGAMEERAAVEGGFVYGVSCNGLSLPESEYLHVSWEKLVECARTAASRVGRERHSFRLIQMPGNLLEITGLSAAPAMRQAGLHVLIGDALKGATAEGRFDLLDDALRQGIPTDYMDVCRQVLEHFNLEIPDGREPTEEEEEIRQGCRMLQQLVQDMNSQLTKFTSLEHYEAHLAGHITPLLDSQFEALDETSTTMLQTFFERYGKMVRYSCAEKTRGMIVSGRGCPSGPHRVGETEPLQTYAVRWLIQQPGVSCAVVDMETAKQVDDAASA 1110
            A SK PG+  VA GLSHSLHPDF+  E+  S  RL    I  YLV+HPE +LA KLGL G  +     DG     P+ VQ     LD+AR + YEEM  LF AME +A  E G  YGVS  GLSLP  + +HVSWEKLVECA  AASR GR+RH+F+++QMP NLLE+TGL+ APAM++AGL V+    L+ AT EG+F+L+DDALR G+PTDYMDVCR+VL HFNLEIP+ REPTEEEEEIRQGCR LQQLVQDMN+QLT FTSLEHYEA L G ITP++  +FEALD+ S  +LQ FF+RYGKMVRYSCA++ R M  +G GCPSG H + ++EPLQ YA+RWL+  PGV C VV+ME  ++V +  +A
Sbjct:   79 AGSKLPGVAHVAPGLSHSLHPDFYRHELSASTGRLGATEIGAYLVEHPEHHLALKLGLAGGENASATADGGXXXXPSQVQ-----LDEARGSFYEEMTALFQAMEGQA--ERGMAYGVSSLGLSLPTWDPMHVSWEKLVECAEQAASRAGRDRHAFKIVQMPANLLEVTGLATAPAMQKAGLKVMACHPLRAATPEGKFELVDDALRGGLPTDYMDVCREVLHHFNLEIPEDREPTEEEEEIRQGCRFLQQLVQDMNAQLTTFTSLEHYEAELGGSITPMIADKFEALDDDSADLLQKFFDRYGKMVRYSCAQRVRDMATTGEGCPSGAHLLADSEPLQIYALRWLMGSPGVGCTVVEMEQPEKVAEGFAA 442          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: D7G6R3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R3_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 2.170e-109
Identity = 187/338 (55.33%), Postives = 227/338 (67.16%), Query Frame = 1
Query:    1 AESKAPGLVPVAQGLSHSLHPDFFLREIKGSLDRLQGAPIAGYLVDHPEANLAAKLGLTGVSSGGGIDGAGTIEPTIVQPTKARLDDARSALYEEMVELFGAMEERAAVEGGFVYGVSCNGLSLPESEYLHVSWEKLVECARTAASRVGRERHSFRLIQMPGNLLEITGLSAAPAMRQAGLHVLIGDALKGATAEGRFDLLDDALRQGIPTDYMDVCRQVLEHFNLEIPDGREPTEEEEEIRQGCRMLQQLVQDMNSQLTKFTSLEHYEAHLAGHITPLLDSQFEALDETSTTMLQTFFERYGKMVRYSC-----------AEKTRGMIVSGRGCPSG 981
            A SK PG+  V  GLSHSLHPDF+  E+  S  R     I  YLV+HPE +LA KLGL G  +       G   P    P++A+LD AR + YEEM  LF AME +A    G  YGVS  GLSLP  + +HVSWEKLVECA  AASR GR+RH+F+++QMP +LLE+TGL+ APAM++AGL V+    L+ AT EG+F+L+DDALR G+P DYMDVCR+VL HFNLEIP+ REPTEEEEEIRQGCR LQQLVQDMN+QLTKFTSLEHYEA L G ITP++  +FEALD+ S  +LQ   ER+  +    C           A  TR M+  G     G
Sbjct:   79 AGSKLPGVAHVVPGLSHSLHPDFYRHELSASTGRFGATEIGAYLVEHPEHHLALKLGLAGGENASATGDGGGPSP----PSQAQLDLARGSFYEEMAALFQAMEGQAG--RGMAYGVSSLGLSLPTWDPMHVSWEKLVECAEQAASRAGRDRHAFKIVQMPASLLEVTGLATAPAMQKAGLKVMACHPLRAATPEGKFELVDDALRGGLPKDYMDVCREVLHHFNLEIPEDREPTEEEEEIRQGCRFLQQLVQDMNTQLTKFTSLEHYEAELGGSITPMIADKFEALDDDSADLLQ---ERWPALASGICTLPVVPFRRGSASLTRNMVGGGNSNSGG 407          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: A0A835ZBE8_9STRA (Aldo_ket_red domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE8_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.140e-61
Identity = 140/379 (36.94%), Postives = 198/379 (52.24%), Query Frame = 1
Query:   16 PGLVPVAQGLSHSLHPDFFLREIKGSLDRLQGAPIAGYLVDHPEANLAAKLGLTGVSSGG--GIDGAGTIEPTIVQPTKARLDDARSALYEEMVELFGAMEERAAVEGGFVYGVSCNGLSLPESEYLHVSWEKLVECARTAASRVGRERH--------SFRLIQMPGNLLEITGLS--AAPAMRQAGLHVLIGDALK----GATAEGRFDLLDDALRQGIPT-DYMDVCRQVLEHFNLEIPDGREPTEEEEEIRQGCRMLQQLVQDMNSQLTKFTSLEHYEAHLAGHITPLLDSQFEALDETSTTMLQTFFERYGKMVRYSCAEKTRGMIVSGRGCPSGPHRVGETEPLQTYAVRWLIQQPGVSCAVVDMETAKQVDDA 1101
            PG + +  G+ +SLHPDF  RE++ S +RL   P   Y+V +PE+ ++  +       G   G DG          P  A L DAR   Y  +  LF  +E+ +A      YGV  +GLS P S+ LH+  E+++  AR AA R              S   +Q+PGNL+E  G+   AA     AG+ V++   L      A       L+    R+G P  DYMDVCR+V+EHF    P+GREPT+EE E  QGC+ +QQLVQDMN QL  F + EH +  LA  I P+++++F+ LD TS   LQ F +RYG MV Y+CAE+ R  I++    P G       +    +++RWL  +P V   +V M   + V DA
Sbjct:   87 PGALRLLPGVMYSLHPDFMARELRSSANRLGRVPSL-YMVHNPESYVSCVVAREQEKLGKQMGEDGV---------PDAALLSDAREETYAALDALFEVLEQCSAAGSVGGYGVCSHGLSSPPSDPLHLDVERILAAARAAARRHSEGTGGGADAGVGSLAAVQLPGNLVETLGVEGGAAAXXXAAGVRVMLTRPLSVMLTTAVVSDGLQLISSLDRRGEPPQDYMDVCREVIEHFTYPPPEGREPTQEEIETMQGCQFMQQLVQDMNQQLGSFATYEHLQQELAHAIIPMINAKFDELDATSVKHLQAFLDRYGDMVTYNCAERLRDAILAAH--PDGGMEPAPGDTWAQHSLRWLQARPHVDTVLVGMHQPRYVQDA 453          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: A0A4D9CPH7_9STRA (Aldo_ket_red domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPH7_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.740e-49
Identity = 143/396 (36.11%), Postives = 196/396 (49.49%), Query Frame = 1
Query:    4 ESKAPG--LVPVAQ----GLSHSLHPDFFLREIKGSLDRLQGAPIAGYLVDHPEANLAA-----KLGLTGVSSGGGIDGAGTIEPTIVQPTKARLDDARSALYEEMVELFGAMEERAAVEGGFV---YGVSCNGLSLPESEYLHVSWEKLVECARTAASRVGRERHSFRLIQMPGNLLEITGLSAAPAMRQAGLHVLIGDALKGATAEGRFDLLDDALRQGIPTD-YMDVCRQVLEHFN-LEIPDGR---EPTEEEEEIRQGCRMLQQLVQDMNSQLTKFTSLEHYEAHLAGHITPLLDSQFEALDETSTTMLQTFFERYGKMVRYSCAEKT-RGMIVSGRGCPSGPHRVGETEPLQTYAVRWLIQQPG--VSCAVVDMETAKQVDDAASA*YTHK 1125
            E  APG   VPV      GL +SLHP+    E+KGSL RLQ   +    V +PE  LA      + G T  S    +              +A L + +  + E +V  F A+E    V  G V   YGVS NG +L   E LH+S   +++ A   A R G+E  S + IQ+P NLLE  G+  A   R+ GL V     L   +  G + L++ A   G P   YM+ CR  LE FN   + +GR   E TEEE E R+GCR++Q L++DMN QLT FTS E Y   L   I P++ S FE+LDE +   LQ FF +YG+MVRY  A +       +G     G  + GE   L  YA+RW + +    +S  +V M + + V +A     T +
Sbjct:   86 EGHAPGPDSVPVGNKEEGGLYYSLHPEVMEHELKGSLARLQVDALDILYVHNPEHVLADIVLRHETGETSFSDDASL--------------QAALREEKQKMRERLVHTFEALE--GVVGSGRVRKGYGVSSNGFALSSKEGLHLSLAMVLDAAAEGARRAGKETPSLKAIQLPLNLLEPGGVVVAAQAREKGLEVFANRPLTAVSQGGLYRLVNKAALSGEPPGGYMEACRTALEVFNPTSLFEGRAEKELTEEELETREGCRIIQDLIRDMNRQLTSFTSTETYTQELERRIIPMIASTFESLDEDAADALQAFFVKYGEMVRYHAAMRAVEACKAAGHVLGGGVGKAGEA--LHEYALRWSLDKVPRQLSGVLVGMPSEEYVHEAVRVASTER 463          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: A0A7S3YLF0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLF0_HETAK)

HSP 1 Score: 135 bits (340), Expect = 2.300e-34
Identity = 59/134 (44.03%), Postives = 94/134 (70.15%), Query Frame = 1
Query:  628 PTDYMDVCRQVLEHFNLEIPDGREPTEEEEEIRQGCRMLQQLVQDMNSQLTKFTSLEHYEAHLAGHITPLLDSQFEALDETSTTMLQTFFERYGKMVRYSCAEKTRGMIVSGRGCPSGPHRVGETEPLQTYAVR 1029
            P  Y+D  R +LEHF   +P+GREPT+EE+E  +GC++L++L+QD+N +L+ F+S+ HY+ +L+  + P +  +F  LD  S+  L+ FFE YG MVR++C + TR  +++G GCP GPH + E + LQ +A+R
Sbjct:   33 PQMYLDASRDILEHFTFPMPEGREPTDEEKETAEGCKVLRELIQDLNQRLSSFSSVLHYDDYLSYKVVPQIADKFAELDGDSSDKLKAFFETYGTMVRFNCTQTTR-QLLAGEGCPGGPHLLREGQSLQDFALR 165          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: A0A7S3V5K1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5K1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.370e-26
Identity = 102/326 (31.29%), Postives = 152/326 (46.63%), Query Frame = 1
Query:  247 ARLDDARSALYEEMVELFGAMEERAAVEGGFVYGVSCNGLSLPESEYLHVSWEKLVECARTAASRVGRERHS------FRLIQMPGNLLEITGLSAAPAMRQ----AGLHV---------------------LIGDALKGATAEGRFDLLD-------DALRQG-------IPTDYMDVCRQVLEHFN----LEIP--DGREPTEEEEEIRQGCRMLQQLVQDMNSQLT-------KFTSLEHYEAHLAGHITPLLDSQFEALDETSTTMLQTFFERYGKMVRYSCAEKTRGMIVSGRGCPSGPHR--VGETEPLQTYAVRWLIQQ 1044
            A L+D R  + E MVE F  +E     +    YGV  NGLSLP S  +H+SWE ++  A  AA  V  +  S         +Q+P NLLE  GL  A  +++    + LH                      L     +G  +   F+L+D       D  R G       +P  Y  +  + + HF+    LEI   + RE T EE E   GC++LQ ++ D+++ LT       ++ S + YE  L   + PL+   FE LDE S+ +LQ FF  +G  VR+S A  TR ++ SG G   G  R  + +  PLQ +A+ +L++Q
Sbjct:  208 APLEDVRHHVRERMVEAFTTLERNVVEKRVGSYGVCSNGLSLPSSHPMHLSWEDVLSAASEAARNVHDDDKSKSTIANLSTLQLPINLLETYGLKVATRIKEHLAASSLHEEENGISTSYLPKTIQIHATRPLTCYPDRGTGSGLPFNLVDYLIPTSEDGSRMGWSHQIASMPLFYTTLLNETMAHFDATHLLEIKAEEERELTVEERETLDGCKLLQSMIHDLDANLTSVAGGSTQYRSFQAYENDLYTKVVPLIHDTFEELDEGSSDLLQRFFRAHGTAVRHSIARTTRALLKSG-GDGGGAERYEIPDEVPLQEFALDFLLRQ 532          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: A0A0G4EW99_VITBC (Aldo_ket_red domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EW99_VITBC)

HSP 1 Score: 109 bits (273), Expect = 1.790e-22
Identity = 104/385 (27.01%), Postives = 169/385 (43.90%), Query Frame = 1
Query:   16 PGLVPVAQGLSHSLHPDFFLREIKGSLDRLQGAPIAGYLVDHPEANLAAKLGLTGVSSGGGIDGAGTIEPTIVQPTKARLDDARSALYEEMVELFGAMEERAAVEGGFV-YGVSCNGLSLPESEYLHVSWEKLVECARTAASRVGRE-------RHSFRLIQMPGNLLEITGL-SAAPAMRQAGLHVLIGDALKGATAEGRFDLLDDALRQGIPTD-YMDVCRQVLEHFN-LEIPDGREPTEEEEEIRQGCRMLQQLVQDMNSQLTKFTSLEHYEAHLAGHITPLLD--------SQFEAL-DETSTTMLQTFFERYGKMVRYSCAEKTRGMIVSGRGCPSGPHRVGETEPLQTYAVRWLIQQPGVSCAVVDMETAKQVDDAASA 1110
            P  V     L H +HP+F   +++ SLDRLQ   +  YL+ +PE  L ++                T + +  +P  A +  AR+ +   + ++F A+EE     G    YG+S N  S+ ES+   + ++ L+E A  A+ R            HSF  IQ+PGNL+E TGL +A        L VLI   L   T+   + L D    Q  P + Y D  R++ ++   L   D ++     E +R+        V+ +   + +  S+  +E  +  HI P +          +   L D     MLQ F +   + VR+   ++TR  + S     S  H +   +P+Q Y +RWL+ QPGVS  ++     + V  A  A
Sbjct:   99 PETVDFGPHLKHCIHPEFMRDQLQRSLDRLQTTYLDVYLLHNPEYYLQSEK---------------TDQQSGAKP--ADVVRARNEMLRRVEQVFEALEEEVQSGGRLQSYGISSNSFSVDESDPTFLPYQDLIERATRASIRAAERLKKAPPPSHSFSTIQLPGNLVETTGLDNAVKWAHHNHLRVLINRPLNAFTSTHAWRLAD----QPDPAEAYRDNLRELKKYLGELGKGDPQKAIRYREVVRE--------VEGLEQGVWEVGSVFEWEQRMTRHILPSIRRAVGHSGVGELGLLQDSKCLDMLQRFVDTLDQRVRFVLGQRTRSDMAS-----SYQHNIPAEQPMQEYCIRWLLDQPGVSYVLLGARKREYVHSALKA 449          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: B5YNR3_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNR3_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 1.050e-11
Identity = 57/197 (28.93%), Postives = 88/197 (44.67%), Query Frame = 1
Query:  628 PTDYMDVCRQVLEHFN----LEIPDGREPTEEEEEIRQGCRMLQQLVQDMNSQLTKFTSLEHYEAHLAGHITPLLDSQFEALDETSTTMLQTFFERYGKMVRYSCAEKTRGMIVSG--------RG--CP----------------------SGPHRVGETEPLQTYAVRWLIQQPGVSCAVVDMETAKQVDDAASA 1110
            P+ Y  +    L HF+    LE    RE T EE E   GC++L+ ++ D+++ L    S   YE +L     PL+   FE LDE S  +LQ FF  +G  VR + A  TR M++ G        +G  CP                      +G + V E   LQ +A+++L+++  V   V+     + V +A  A
Sbjct:  547 PSAYQPILNAALSHFDAESILEASRERELTVEERETLDGCKLLRDMIHDLDASLDTMKSFAAYEKYLVNVAVPLIYGSFEELDEESAGVLQLFFRVHGMAVRMTVARWTRDMLLGGWKRANDGLKGDVCPKTLDKDQEKKVAKLWKALGFGFTGGYDVPEDVVLQEFALKYLLEEDSVRGVVIGCSRPEHVLEAMRA 743          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: A0A7S1BXX8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BXX8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.040e-7
Identity = 48/168 (28.57%), Postives = 78/168 (46.43%), Query Frame = 1
Query:  571 GATAEGRFDLLDDALRQGIPTDYMDVCRQVLEHFN----LEIPDGREPTEEEEEIRQGCRMLQQLVQDMNSQLTKFT-------SLEHYEAHLAGHITPLLDSQFEALDETSTTMLQTFFERYGKMVRYSCAEKTRGMIVSGRGCPSGPHRVGETEPLQTYAVRWLIQ 1041
            G++A  R  L    + + +P +Y       L  F+    +E  + R+ T EE E   GCR+L+ +++D++ ++T          SL  YE  +A  I PL+   FE LD  S   L  +F  +G  VR++ A   R M+              E E LQ YA+R+ ++
Sbjct:   44 GSSAPPRI-LRTHEIAESLP-NYHGALNATLSRFDAAALVEEGNVRDLTAEERETLHGCRVLRDMLRDLDRRITARPPDPDARYSLAEYETEVAEKIVPLMHETFEGLDGDSVQCLGEYFRAHGDAVRHAVARNVREMLRE----EGAXXXXQEEETLQEYAMRFALE 205          
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Match: UPI00198B81B4 (Aldo/keto reductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI00198B81B4)

HSP 1 Score: 61.6 bits (148), Expect = 1.440e-6
Identity = 52/161 (32.30%), Postives = 73/161 (45.34%), Query Frame = 1
Query:   22 LVPVAQGLSHSLHPDFFLREIKGSLDRLQGAPIAGYLVDHPEANLAA-KLGLTGVSSGGGIDGAGTIEPTIVQPTKARLDDARSALYEEMVELFGAMEERAAVEGGFVYGVSCNGLSLPESEYLHVSWEKLVECARTAASRVGRERHSFRLIQMPGNLLEI 501
            +V V +G  H +HP F   ++  SL RL  A I   L+  PE  LA  ++   G +  G  D                 D  R A        F  +E+ A       YGVS NGLSLPE +  + S ++LVE A      VG + H F ++++P NLLE+
Sbjct:   96 MVVVDEGCWHCIHPTFLREQLADSLVRLGLARIDVVLLHDPECFLAHDRVHADGAARRGAYD-----------------DRLRRA--------FACLEQLADAGAIGWYGVSSNGLSLPEHDLRYTSTQRLVELAH----EVGGDGHRFGVVELPMNLLEL 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12131.1352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JTW4_9PHAE7.340e-15060.38Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
D7G6R3_ECTSI2.170e-10955.33EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A835ZBE8_9STRA1.140e-6136.94Aldo_ket_red domain-containing protein n=1 Tax=Tri... [more]
A0A4D9CPH7_9STRA1.740e-4936.11Aldo_ket_red domain-containing protein n=2 Tax=Mon... [more]
A0A7S3YLF0_HETAK2.300e-3444.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3V5K1_9STRA1.370e-2631.29Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A0G4EW99_VITBC1.790e-2227.01Aldo_ket_red domain-containing protein n=1 Tax=Vit... [more]
B5YNR3_THAPS1.050e-1128.93Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S1BXX8_9STRA9.040e-728.57Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
UPI00198B81B41.440e-632.30Aldo/keto reductase n=1 Tax=Deltaproteobacteria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12131contigH-paniculata_contig12131:2567..6361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.9
Seed ortholog evalue3.2e-70
Seed eggNOG ortholog2880.D7G6R3
Hectar predicted targeting categoryother localisation
EggNOG OGs2E5ZQ@1,2SCRD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1329
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12131.1352.1prot_H-paniculata_contig12131.1352.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12131 2783..6076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.1630068-UTR-H-paniculata_contig12131:2566..27821622928932.1630068-UTR-H-paniculata_contig12131:2566..2782Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12131 2567..2782 -
1691480672.3815234-UTR-H-paniculata_contig12131:2566..27821691480672.3815234-UTR-H-paniculata_contig12131:2566..2782Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12131 2567..2782 -
1622928932.2636642-UTR-H-paniculata_contig12131:6076..63611622928932.2636642-UTR-H-paniculata_contig12131:6076..6361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12131 6077..6361 -
1691480672.4519978-UTR-H-paniculata_contig12131:6076..63611691480672.4519978-UTR-H-paniculata_contig12131:6076..6361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12131 6077..6361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928932.1767662-CDS-H-paniculata_contig12131:2782..30071622928932.1767662-CDS-H-paniculata_contig12131:2782..3007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 2783..3007 -
1691480672.3924816-CDS-H-paniculata_contig12131:2782..30071691480672.3924816-CDS-H-paniculata_contig12131:2782..3007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 2783..3007 -
1622928932.1921916-CDS-H-paniculata_contig12131:3281..34401622928932.1921916-CDS-H-paniculata_contig12131:3281..3440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 3282..3440 -
1691480672.4033663-CDS-H-paniculata_contig12131:3281..34401691480672.4033663-CDS-H-paniculata_contig12131:3281..3440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 3282..3440 -
1622928932.2053595-CDS-H-paniculata_contig12131:3967..40431622928932.2053595-CDS-H-paniculata_contig12131:3967..4043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 3968..4043 -
1691480672.4110606-CDS-H-paniculata_contig12131:3967..40431691480672.4110606-CDS-H-paniculata_contig12131:3967..4043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 3968..4043 -
1622928932.2260654-CDS-H-paniculata_contig12131:4598..47051622928932.2260654-CDS-H-paniculata_contig12131:4598..4705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 4599..4705 -
1691480672.418563-CDS-H-paniculata_contig12131:4598..47051691480672.418563-CDS-H-paniculata_contig12131:4598..4705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 4599..4705 -
1622928932.23949-CDS-H-paniculata_contig12131:5382..54731622928932.23949-CDS-H-paniculata_contig12131:5382..5473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 5383..5473 -
1691480672.4261334-CDS-H-paniculata_contig12131:5382..54731691480672.4261334-CDS-H-paniculata_contig12131:5382..5473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 5383..5473 -
1622928932.2512584-CDS-H-paniculata_contig12131:5906..60761622928932.2512584-CDS-H-paniculata_contig12131:5906..6076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 5907..6076 -
1691480672.4346044-CDS-H-paniculata_contig12131:5906..60761691480672.4346044-CDS-H-paniculata_contig12131:5906..6076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12131 5907..6076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12131.1352.1

>prot_H-paniculata_contig12131.1352.1 ID=prot_H-paniculata_contig12131.1352.1|Name=mRNA_H-paniculata_contig12131.1352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
MVELFGAMEERAAVEGGFVYGVSCNGLSLPESEYLHVSWEKLVECARTAA
SRVGRERHSFRLIQMPGNLLEITGLSAAPAMRQAGLHVLIGDALKGATAE
GRFDLLDDALRQGIPTDYMDVCRQVLEHFNLEIPDGREPTEEEEEIRQGC
RMLQQLVQDMNSQLTKFTSLEHYEAHLAGHITPLLDSQFEALDETSTTML
QTFFERYGKMVRYSCAEKTRGMIVSGRGCPSGPHRVGETEPLQTYAVRWL
IQQPGVSCAVVDMETAKQVDDAASA*
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mRNA from alignment at H-paniculata_contig12131:2567..6361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12131.1352.1 ID=mRNA_H-paniculata_contig12131.1352.1|Name=mRNA_H-paniculata_contig12131.1352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3795bp|location=Sequence derived from alignment at H-paniculata_contig12131:2567..6361- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGAATCGAAAGCGCCCGGGCTAGTGCCAGTTGCGCAAGGCCTATCCCA CTCATTACATCCCGATTTCTTCCTACGCGAGATAAAGGGATCATTAGATA GGTTACAAGGCGCACCTATAGCTGGCTACCTAGTTGATCACCCAGAAGCA AACCTCGCAGCGAAGCTAGGCTTGACGGGTGTGTCAAGTGGAGGTGGCAT AGATGGGGCGGGAACCATTGAACCGACAATTGTGCAGCCGACCAAAGCGC GGTTGGACGATGCTCGCAGCGCACTGTATGAGGAGATGGTAGAGCTTTTT GGGGCCATGGAAGAGCGAGCAGCAGTCGAAGGCGGTTTCGTGTACGGGGT TAGCTGTAACGGCTTGTCGCTTCCTGAGTCTGAATACCTGCACGTGTCGT GGGAAAAACTCGTTGAGTGTGCCCGGACGGCTGCATCCAGGGTCGGTCGC GAACGGTGAGGAATCGCACTGCCGGCTTTCTTTCCGTTGTCCTAACCCTG AGGTTTGTCAATCACCTGCGCTTTCGCCTGTGTACGATGTGTACGGTAGC GCTTCGCCTATATTTCGAGTCGGTGGCGTCTGCTGCAAACGAAAAACCAG CATATGATACCCTTGTTAGAGAAGGTCGTCTCCAGGGTAATGGACTTTTC CAAAAGATCCACTTGACGCCACCCGATGGTCTCGTTTCGCCACGACCGTG CCAGTTGTCACCTATGTTGGGCCATTAGCCAATACGCAAGTAATGCAACT GCCAAGGCGTCGTTACTACCAATATTTGGCAGCGCCGCTAGCGGGGTATA AGGCCACCCGACGATTGATGATTGACGGAGATACAGCCCTCTCATGGCAA TCGTCTTTTGTCTCTCTTGGTGCGGTTGACCGTACCAGACATTCCTTTCG CTTGATTCAGATGCCGGGGAACCTGCTAGAAATCACAGGGTTGTCTGCTG CCCCAGCCATGCGGCAGGCCGGACTTCACGTGAGTTTGATGGCATGGTTA CCCTTCATGGCTCTTTGACCATCGCCCTGTGGCGACCGTATATGGTGGGG TTAGGTCAGTTGCTGCAATAGCATCAAATGCGTGACTGGATAGACCCATT TTGTTCTATACGCGGATTGTACTGGTATCTCTGGAATCGTGGCTGTAGTA GCAACAGGCTGGAGAGATGCATTTACCAGGTTTTCAGACCCTGTCTGTGG TGTTGCACGATGGAGTTCCAGCAAAACAGGAGCCGCGGCGATGAACCTCT CAGTTGTCCAAACCTGATTCGCAATGTAACTAACAATGTGCCAAGAAGAC TCCTGATTACGTAGTCAGGTCGTTTACGCCATGACAGTGACTTGAGTACT TTTATCAACCGGCAGGATGTTGACCTGTTCACGGTATCTTCTTGTAGAAA CGCATTTGGTACGTCAAGTCGTCAATAGGAGATGACAAGAGAGTGATACA AAGGGTCCTGTGGCTCGATAGTAAGGCACGGTGCACCCTTCGCGTCGCAC AAGCCACATGCAGTCGACACGTGTTAGCTTGCTGCTCAGCGGAATCTTGT TGCGTTGCGATGCGACTGTCACTAAGATTTATAGTTTGTGTATGCTTGGG GTTGATGGTGCATTTGTCAGCCCTTCGCCTCTTGTTTCATGATACTCTGC CCCTAGGTGCTGATTGGTGATGCGTTAAAGGGTGCGACCGCCGAGGGAAG GTTTGACCTCTTAGACGATGCACTTCGACAAGGAATTCCCACGGATTACA TGGACGTGTGCAGGTGTGTGTAATACAATATGTAGCTTTCCCAAACCGGA AGTAGATCTACAGCGTTAGTGAAATAGCAAAGCCCGCCAATAATTACTCG CACAAGGACCACACGATCAGCTATGAAGGTGATGGTGATGAGTGGCTGCC CCGTGCATTTTTGTGTAGATAAAGTCTGTTCAGGTAGTGTACCTTCAACC TGGCATAGGCATAATGTCTTGAGAATTGAGAATGCAGCGTTGGTGGTGGA TGTTTCTTCCACACTATCAAGCATTCGGTGCAATATAGTAGCCGTTCTCG TTTTTGGGTTCTCCGTGTTGGAGGTGCTGCGTACGCTACAAGTACTAGGT CGTTCACTTTTGTGGGAATGTCTATTGCCTACGGTGCTTGTTGCAGAACA GTTGTCTAAACCCCAGGATTATTGCGTTACATGGACACATTTTTCGAACA CTGTAGTATCAGTGGGGCGTAGATATTCATTGTAGACAAGACATACGGTG TCGTTGGCCATGTTTGTCTTGTTCCATGGTCTAGTTCTTGTGTCGTTTCG TTTGATCACTTCATGCAGACAAGTATTGGAACACTTTAACTTGGAGATTC CTGACGGACGAGAGCCTACCGAAGAGGAAGAAGAAATTCGTCAGGCGAGG AATGCGGGGTAGCATAGTGCCGACATCGGAGTTCAGGCGTTTTGTTGTGC TGTACTTGAAAGACGATAAATCTATGGCATCGCTCAGCTGGCCGACACGA GGCGCTGTACATCTTCTAGTTCCCTTTGTTTTGCCACCACAGCATTGTGA CAATGTGTTTCGACAATTGACCAGCGTTGGAGCTCGATTGAATTATTTTT ACTTCTAAATTCAATTAAATGCCTGATGCTCTACATCGTGTATCCTTTCC CTAACCCTACCCCTAACCCTAGAGTTTGAAACGGAAGCGTTGCCGGGGTT TACTGTACCTATGTTTCACGGTCGGCCCGCCGGCCATGTGGTTCCGTCAT GCACATTTGATCATACCTGCACCCGCACCTAGTACCTGATAATGGGCGCA CATATGTTTTTGGTGGTATTTCTAGTCCTCCGGTTGCCTCTACCCCTTTA CCTTGCAACGTTGACGCCAGCGGTACCTTTTTCATGTTTACCCGTTCAAA AATTCTGTGTCGGCTGTACAGGGCTGTCGAATGCTGCAACAGTTGGTTCA AGACATGAACTCCCAGCTGACCAAGTTCACATCTCTCGAGCACTACGAAG CACATTTAGCCGGACACATCACCCCGTTGCTGGACAGCCAGTTTGAAGCG CTCGACGAGACGTCGACCACGATGTTGCAAGTGAGTCAGGGCATTCACAC CTTGAGCGATGGCGAAAGGGGGGAGGCAGGATTTTATATGTCTTCCTCCT GGGCATCACCGCATGCTGCGCATGCAGAAGATATTCTAGCCTGAAATCCA TTCTAAGAAAGCGTTTTCACGTTCACGAGGAGCCACAAGAAGTGCGCGAA TTATTGAATCTCTTCCCTCTCTGTGTGATCCTTGTAGGAAATATGACCCT TATAACAAGCTTCTCAATGACCCCACCCTCTCTTTAATTGCCATATACCC CCAGACGTTCTTCGAGAGGTACGGCAAAATGGTGCGATACAGCTGCGCGG AGAAAACGCGAGGAATGATTGTATCGGGCAGAGGCTGCCCCAGTGGTCCA CATCGAGTGGGCGAGACTGAACCTCTGCAGACATATGCGGTCCGATGGCT AATTCAACAACCCGGAGTCTCTTGCGCTGTCGTTGATATGGAGACGGCAA AGCAAGTCGATGATGCCGCTTCAGCCTAATATACGCACAAGCTTCCTGGA ACTTATCGAAGACGATGTGCCTGATGTTGTGGTCGGCTTGGTGTATGCCA CTTCTTTGGGTGTTGAGTGATTTTCCTCGCGCGTGGATCCGGTTGACGTA GCGTCGGCACGTGAGCTAAATGTACAGAGATATACCAGGGGAAAGATATC CATTCGCCGCGCTTCATGTTCAAGGGAAAATAAGCATCAAAACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12131:2567..6361-

>mRNA_H-paniculata_contig12131.1352.1 ID=mRNA_H-paniculata_contig12131.1352.1|Name=mRNA_H-paniculata_contig12131.1352.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig12131:2567..6361- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGAGCTTTTTGGGGCCATGGAAGAGCGAGCAGCAGTCGAAGGCGG
TTTCGTGTACGGGGTTAGCTGTAACGGCTTGTCGCTTCCTGAGTCTGAAT
ACCTGCACGTGTCGTGGGAAAAACTCGTTGAGTGTGCCCGGACGGCTGCA
TCCAGGGTCGGTCGCGAACGATGGTAGAGCTTTTTGGGGCCATGGAAGAG
CGAGCAGCAGTCGAAGGCGGTTTCGTGTACGGGGTTAGCTGTAACGGCTT
GTCGCTTCCTGAGTCTGAATACCTGCACGTGTCGTGGGAAAAACTCGTTG
AGTGTGCCCGGACGGCTGCATCCAGGGTCGGTCGCGAACGACATTCCTTT
CGCTTGATTCAGATGCCGGGGAACCTGCTAGAAATCACAGGGTTGTCTGC
TGCCCCAGCCATGCGGCAGGCCGGACTTCACACATTCCTTTCGCTTGATT
CAGATGCCGGGGAACCTGCTAGAAATCACAGGGTTGTCTGCTGCCCCAGC
CATGCGGCAGGCCGGACTTCACGTGCTGATTGGTGATGCGTTAAAGGGTG
CGACCGCCGAGGGAAGGTTTGACCTCTTAGACGATGCACTTCGACAAGGA
ATTCCCACGGATTACATGGACGTGTGCAGGTGCTGATTGGTGATGCGTTA
AAGGGTGCGACCGCCGAGGGAAGGTTTGACCTCTTAGACGATGCACTTCG
ACAAGGAATTCCCACGGATTACATGGACGTGTGCAGACAAGTATTGGAAC
ACTTTAACTTGGAGATTCCTGACGGACGAGAGCCTACCGAAGAGGAAGAA
GAAATTCGTCAGACAAGTATTGGAACACTTTAACTTGGAGATTCCTGACG
GACGAGAGCCTACCGAAGAGGAAGAAGAAATTCGTCAGGGCTGTCGAATG
CTGCAACAGTTGGTTCAAGACATGAACTCCCAGCTGACCAAGTTCACATC
TCTCGAGCACTACGAAGCACATTTAGCCGGACACATCACCCCGTTGCTGG
ACAGCCAGTTTGAAGCGCTCGACGAGACGTCGACCACGATGTTGCAAGGC
TGTCGAATGCTGCAACAGTTGGTTCAAGACATGAACTCCCAGCTGACCAA
GTTCACATCTCTCGAGCACTACGAAGCACATTTAGCCGGACACATCACCC
CGTTGCTGGACAGCCAGTTTGAAGCGCTCGACGAGACGTCGACCACGATG
TTGCAAACGTTCTTCGAGAGGTACGGCAAAATGGTGCGATACAGCTGCGC
GGAGAAAACGCGAGGAATGATTGTATCGGGCAGAGGCTGCCCCAGTGGTC
CACATCGAGTGGGCGAGACTGAACCTCTGCAGACATATGCGGTCCGATGG
CTAATTCAACAACCCGGAGTCTCTTGCGCTGTCGTTGATATGGAGACGGC
AAAGCAAGTCGATGATGCCGCTTCAGCCTAAACGTTCTTCGAGAGGTACG
GCAAAATGGTGCGATACAGCTGCGCGGAGAAAACGCGAGGAATGATTGTA
TCGGGCAGAGGCTGCCCCAGTGGTCCACATCGAGTGGGCGAGACTGAACC
TCTGCAGACATATGCGGTCCGATGGCTAATTCAACAACCCGGAGTCTCTT
GCGCTGTCGTTGATATGGAGACGGCAAAGCAAGTCGATGATGCCGCTTCA
GCCTAA
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