mRNA_H-paniculata_contig12129.1348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12129.1348.1
Unique NamemRNA_H-paniculata_contig12129.1348.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12129.1348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12129contigH-paniculata_contig12129:6709..7852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size376
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12129.1348.1prot_H-paniculata_contig12129.1348.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12129 6709..7101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.733309-CDS-H-paniculata_contig12129:6708..68071622928931.733309-CDS-H-paniculata_contig12129:6708..6807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12129 6709..6807 -
1691480672.1792257-CDS-H-paniculata_contig12129:6708..68071691480672.1792257-CDS-H-paniculata_contig12129:6708..6807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12129 6709..6807 -
1622928931.7617395-CDS-H-paniculata_contig12129:6981..71011622928931.7617395-CDS-H-paniculata_contig12129:6981..7101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12129 6982..7101 -
1691480672.186917-CDS-H-paniculata_contig12129:6981..71011691480672.186917-CDS-H-paniculata_contig12129:6981..7101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12129 6982..7101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.7768831-UTR-H-paniculata_contig12129:7101..71831622928931.7768831-UTR-H-paniculata_contig12129:7101..7183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12129 7102..7183 -
1691480672.1939735-UTR-H-paniculata_contig12129:7101..71831691480672.1939735-UTR-H-paniculata_contig12129:7101..7183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12129 7102..7183 -
1622928931.8091037-UTR-H-paniculata_contig12129:7779..78521622928931.8091037-UTR-H-paniculata_contig12129:7779..7852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12129 7780..7852 -
1691480672.201093-UTR-H-paniculata_contig12129:7779..78521691480672.201093-UTR-H-paniculata_contig12129:7779..7852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12129 7780..7852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12129.1348.1

>prot_H-paniculata_contig12129.1348.1 ID=prot_H-paniculata_contig12129.1348.1|Name=mRNA_H-paniculata_contig12129.1348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MLCGIRTQWSQLHHGAPGIRPTQDSTVLAKIEEDYAKHLRLVKANRQVIE
DNTQKSIIAQGDNKPLDYVFMMV
back to top

mRNA from alignment at H-paniculata_contig12129:6709..7852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12129.1348.1 ID=mRNA_H-paniculata_contig12129.1348.1|Name=mRNA_H-paniculata_contig12129.1348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1144bp|location=Sequence derived from alignment at H-paniculata_contig12129:6709..7852- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATTGGGTCAAGGTCTACGGAGAGAGTATGCCAAATCGCAACGTAACAA
GGCTCTACTTGTCCAGCAAGGAGGTAAGAAACGGCAAACGAGCAGGGGAA
TCATGTGTTAGTGAGCAGAGAAGTAAAGAGAGATATTCTAAATATTTTTC
AAGCTTTTCTTATTGGTTGCGATGACGCTGCCATTGCCATGGTTACTTCG
TTTGGGTTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAACCTTTTCCGCT
GCTTCCACATTCAGGTATTCACCCAAACATGTCTACATTTCCTTTGGTTA
CTTCGTTAGTTCGTAGTTGTGTTGTGCTTGATATGTGTAACCGTGATTGA
CCGCAATATGTTTGTTGTGTTGGTTATGGTGGTTATGTTGTTTCCTTTTG
TTGCACACAGGTATCATAGACAAGTAGTAGTGTTGGTAGCCTTTTATATA
GTAGTATCAGCAGCAGTAGTAGTTGTTATAGTACTCACGTGTTGTGCTAG
CATTGGCTTTTCTTGTGCAGAACAGTTGTAACAGTAGTACAACAAGATGA
AATGCAACCGGCCAACAAATAGATCACTCTACAATATGTCGTTGTTTTCA
TGATGCTTAACTTCTTTGGTATGCCCGACACGACCCTCCTTCTCCCTCTA
CGCTCTGTCTTCCCCTCAGCTGGCATTGATACTTGGCAGGAACTATACGA
GCGTTTAAAGAAGAGCAGAGCCGCGTCCTCATAGGGGTTAGCCTCGACTT
CATGCTTTGCGGCATACGTACGCAGTGGAGCCAGCTCCACCATGGAGCAC
CAGGCATTAGGCCCACCCAGGACTCCACGGTATTAGCTAAGATTGAGGAA
GATTATGCCAAGCACCTGAGGGTAAGTGTGGCCTGTGGGAGAAGTCAACG
AGCGTTTTTTGCCTTGTTTATGTTTCTTATACCTGTTCCATTCGATTCTG
GTGATATATTATTGGTGACTCGCTCTATGCTGTTGTGTAATGCGATTTTA
ACAATATCACCCTGTCTCCTCTTCTTCGTTCTTCTGTCTTTGCAGCTAGT
CAAGGCAAATCGACAGGTGATTGAGGACAATACTCAGAAAAGCATAATTG
CCCAGGGCGACAACAAGCCTCTCGACTACGTCTTCATGATGGTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12129:6709..7852-

>mRNA_H-paniculata_contig12129.1348.1 ID=mRNA_H-paniculata_contig12129.1348.1|Name=mRNA_H-paniculata_contig12129.1348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig12129:6709..7852- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTGCGGCATACGTACGCAGTGGAGCCAGCTCCACCATGGAGCACC
AGGCATTAGGCCCACCCAGGACTCCACGGTATTAGCTAAGATTGAGGAAG
ATTATGCCAAGCACCTGAGGATGCTTTGCGGCATACGTACGCAGTGGAGC
CAGCTCCACCATGGAGCACCAGGCATTAGGCCCACCCAGGACTCCACGGT
ATTAGCTAAGATTGAGGAAGATTATGCCAAGCACCTGAGGCTAGTCAAGG
CAAATCGACAGGTGATTGAGGACAATACTCAGAAAAGCATAATTGCCCAG
GGCGACAACAAGCCTCTCGACTACGTCTTCATGATGGTTCTAGTCAAGGC
AAATCGACAGGTGATTGAGGACAATACTCAGAAAAGCATAATTGCCCAGG
GCGACAACAAGCCTCTCGACTACGTCTTCATGATGGTT
back to top