mRNA_H-paniculata_contig12127.1347.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 177 bits (449), Expect = 5.890e-46 Identity = 96/241 (39.83%), Postives = 133/241 (55.19%), Query Frame = 1
Query: 52 GKFYSGATVSHDPERVQGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFL-NNTCRTRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLSGAFKGAQRRWPVPRMAPVTRVYMLPMQDDVAPAVDTLDGYKYVL----AIEDDLNGFVWLAPAKACTANF---TVEQLVKWCAIFG 750
GK YS + HD +R+ GLA++RRP TAGEL+QFLQA NW+RTS+P ++ +V P+RE LE + N RT+ A I WT +WE A + V+ AV LYHP A ++VL+FPDA+D WGS VTQVP E+ +MSHEPL FLSG F+G+Q RW + + + T +Y+L I D ++ +AC + T ++L W A+ G
Sbjct: 859 GKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWAT-------------VDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLG 1086
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.250e-42 Identity = 101/241 (41.91%), Postives = 134/241 (55.60%), Query Frame = 1
Query: 52 GKFYSGATVSHDPERVQGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFLNNT-CRTRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLSGAFKGAQRRWPVPRMAPVTRVYMLPMQDDVAPAVDTLDGYKYVL----AIEDDLNGFVWLAPAKACT---ANFTVEQLVKWCAIFG 750
GK YS V HDPER+ GLA+MRRP TAGEL+QFLQA NW+RTS+P +A VV P+R LE L RT+ A+ I T AW A + V+ AV L HP +VL+FPDA+D WGS +TQVP ++L G +M+HEP+ FLSG FKGAQ++ R A V + + V T +Y+L I D ++ +AC A T ++L +W A+ G
Sbjct: 957 GKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTFKGAQQQ----RWATVDK--------EGYAIVSTFKRLEYLLWDSVHIFTDHRNLAYIFDPEACVSAVAKTTAQRLDQWKAVLG 1185
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 154 bits (388), Expect = 7.200e-38 Identity = 80/155 (51.61%), Postives = 102/155 (65.81%), Query Frame = 1
Query: 52 GKFYSGATVSHDPERVQGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFLNNTCR-TRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLS 513
GK YSG V+ DPER+QGL MRRP TAG+L+QFLQA W+RTS+ LA V+EP+R +LE + + R T+ A IK WT AW +A + V+ AV L HP+ +VL+FPDA++ WGS +TQVP EEL G M+HEPLAFLS
Sbjct: 610 GKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPNRAIKCEAWTAGMVEAWISAQDLVAHAVALSHPKDGFAVLMFPDASEEHWGSFLTQVPQEELERGVSVEHMTHEPLAFLS 764
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6G0WPP4_9STRA (Reverse transcriptase domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPP4_9STRA) HSP 1 Score: 140 bits (352), Expect = 4.060e-33 Identity = 69/167 (41.32%), Postives = 99/167 (59.28%), Query Frame = 1
Query: 52 GKFYSGATVSHDPERVQGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFLNNTC-RTRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLSGAFKGAQRRWPV 549
GK S V+H P RVQGL + P TA EL QFL A+NWMR ++PE + +V P+ ++L+ R + A +++ W E+ A +E+ + VPL HP ++ V ++ DA+D FWG+ TQVP ++L +E HEPLAFLSGAF+GA RWP+
Sbjct: 908 GKEVSAEGVAHAPARVQGLCELEPPQTAAELQQFLCATNWMRANIPEYSALVAPLTKLLDIGAKAAASRKKTALARVSLSSIGWCEDHAECFESVKTTLQRMVPLAHPDPEKMVCLYTDASDGFWGAIATQVPLDDLEL--VASEQRHEPLAFLSGAFRGASERWPI 1072
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6A4ZJ35_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZJ35_9STRA) HSP 1 Score: 136 bits (343), Expect = 5.930e-32 Identity = 65/167 (38.92%), Postives = 96/167 (57.49%), Query Frame = 1
Query: 52 GKFYSGATVSHDPERVQGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFLNNT-CRTRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLSGAFKGAQRRWPV 549
GK S V+H P RVQGL + P TA +L QFL A+NWMR ++P+ +V P+ +++ R + A + + W E+ +E + VPL HP D+ V ++ DA++ FWG+ TQVPSE+L+ ++ HEPLAFLSGAF+G+ RWP+
Sbjct: 552 GKEISAEGVAHSPSRVQGLCGLEPPQTAADLQQFLCATNWMRANIPQYTELVAPLTRLMDIAAKAADSRKKTALTRVALSSVGWAEDHLTCFERVKATLQRMVPLSHPDPDKMVCLYTDASEGFWGAVATQVPSEDLALPANDQR--HEPLAFLSGAFRGSSERWPI 716
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6A5AIE2_9STRA (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIE2_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.740e-31 Identity = 65/172 (37.79%), Postives = 99/172 (57.56%), Query Frame = 1
Query: 37 RCAGAGKFYSGATVSHDPERVQGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFLNNT-CRTRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLSGAFKGAQRRWPV 549
R GK S V+H PER+QGL + P TA +L QFL A+NWMR ++P+ +V P+ ++L+ R + A + + W+ + ++ E + VPL HP D+ V ++ DA++ FWG+ TQVP E+L+ ++ HEPLAFLSG+F+GA RWP+
Sbjct: 245 RTVWCGKEISADGVAHAPERIQGLCDLGPPQTAADLQQFLCATNWMRGNIPQYTELVAPLTKLLDIAAKAADSRKKTALTRVALSSVGWSGDHLECFDRIKETLKRMVPLSHPDPDKMVCLYTDASEGFWGAVATQVPVEDLAL--PASDQRHEPLAFLSGSFRGASGRWPI 414
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6G0WP62_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WP62_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.780e-30 Identity = 67/201 (33.33%), Postives = 108/201 (53.73%), Query Frame = 1
Query: 76 VSHDPERVQGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFLNNT--CRTRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLSGAFKGAQRRWPVPRMAPVTRVYMLPMQDDVAPAVDTLDGYKYVLAIEDDLNGF 672
++HDP+RVQGL + P+T +L QFL A+NWMRTS+P+ A +VEP+R +LE + + + A + + W+++ A ++ + + VPL HP ++ + +F DA+ WG+ TQ+P +L E HEPLAFLSG+F G+ RWP ++ + V+ +Y+L E+D F
Sbjct: 543 IAHDPDRVQGLRDLEYPATGADLQQFLCATNWMRTSIPDYARLVEPLRGLLEVAVRSAGGSSKKAALARVKLAAIGWSKDHAKCFDDVKDTLGRMVPLAHPTPEKIICLFTDASVSHWGAACTQIPKGDLEL--PLEEQRHEPLAFLSGSFTGSSCRWPT-------------IEKEAFAVVEACKRLEYLLLREEDFRSF 728
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.400e-30 Identity = 74/207 (35.75%), Postives = 106/207 (51.21%), Query Frame = 1
Query: 154 LQASNWMRTSVPELAVVVEPMREMLETFL-NNTCRTRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLSGAFKGAQRRWPVPRMAPVTRVYMLPMQDDVAPAVDTLDGYKYVL----AIEDDLNGFVWLAPAKACTANF---TVEQLVKWCAIFG 750
+ A NW+RTS+P ++ +V P+RE LE + N RT+ A I WT +WE A + V+ AV LYHP A ++VL+FPDA+D WGS VTQVP E+ +MSHEPL FLSG F+G+Q RW + + + T +Y+L I D ++ +AC + T ++L W A+ G
Sbjct: 117 ISAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWAT-------------VDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLG 310
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6G0WP84_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WP84_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.670e-28 Identity = 63/162 (38.89%), Postives = 93/162 (57.41%), Query Frame = 1
Query: 76 VSHDPERV---QGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFLNNTC-RTRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDANDRFWGSCVTQVPSEELSAGGDEAEMSHEPLAFLSGAFKGAQRRWPV 549
V HD + + +GL + P TA EL QFL A+NWMR +PE + +V P+ ++ + R + A +++ W E+ A +E+ + VPL HP D+ V ++ DA+D FWG+ TQVP ++L +E HEPLAFLSGAF+GA RWP+
Sbjct: 217 VLHDEDYMVWQRGLCELEPPQTAAELQQFLCATNWMRVKIPEYSALVAPLTKLSDIGAKAAASRKKTALARVSLSSIGWCEDHAECFESVKTTLQRMVPLAHPDPDKMVCLYTDASDGFWGAIATQVPLDDLEL--VASEQRHEPLAFLSGAFRGASERWPI 376
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE) HSP 1 Score: 125 bits (315), Expect = 2.770e-28 Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 52 GKFYSGATVSHDPERVQGLASMRRPSTAGELVQFLQASNWMRTSVPELAVVVEPMREMLETFLNNTCR-TRCAADEITIKRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDAN 411
GK YSG V+HDP R+QGLA MRRP TAGEL+Q LQA NW+RTS+P LA VVEP+R +LE + + R T+ A IK WT A AW +A + V+ AV L HP+ +VL+FPDA+
Sbjct: 785 GKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRAIKSEAWTAGMAKAWTSAQDLVAHAVALSHPKEGFAVLMFPDAS 905 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12127.1347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12127.1347.1 >prot_H-paniculata_contig12127.1347.1 ID=prot_H-paniculata_contig12127.1347.1|Name=mRNA_H-paniculata_contig12127.1347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp MPRFTRRSCFGGRCAGAGKFYSGATVSHDPERVQGLASMRRPSTAGELVQback to top mRNA from alignment at H-paniculata_contig12127:553..1806- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12127.1347.1 ID=mRNA_H-paniculata_contig12127.1347.1|Name=mRNA_H-paniculata_contig12127.1347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig12127:553..1806- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12127:553..1806- >mRNA_H-paniculata_contig12127.1347.1 ID=mRNA_H-paniculata_contig12127.1347.1|Name=mRNA_H-paniculata_contig12127.1347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig12127:553..1806- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |