mRNA_H-paniculata_contig12124.1346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI) HSP 1 Score: 254 bits (649), Expect = 3.150e-71 Identity = 131/209 (62.68%), Postives = 160/209 (76.56%), Query Frame = 1
Query: 1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDNDVPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL*AVELPRVEALQGPPQDPNSWR 624
+A VP G ++L +++RPSLL AI ++TN A+ APCVL GM G GK++LASAVVRD +VR+HF AG+FW+R ++AK+ LHA L G L +A+ P L S+E+VTR+L V A S RLVVLDDVWE E+VDAL+ TGLQLLVTTRDR+VVS+PG VEVGDMEE+EALEVLRVGCGA +ELPR EALQGPPQDP SWR
Sbjct: 214 MASVPAGPISLTDGHISRPSLLGRAIGYLTNTAVGDAPCVLTGMAGAGKSVLASAVVRDEKVREHFHAGMFWVRA-RDAKDQLHACLEGFALRVASTSGTTSPGLGSVEEVTRYLKAVCADSVSPRLVVLDDVWEREIVDALKLTGLQLLVTTRDRSVVSMPGECVEVGDMEEDEALEVLRVGCGASKNLELPRAEALQGPPQDPKSWR 421
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5KF10_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF10_9PHAE) HSP 1 Score: 233 bits (593), Expect = 1.970e-66 Identity = 124/199 (62.31%), Postives = 153/199 (76.88%), Query Frame = 1
Query: 1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDNDVPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL*AVELPRVEALQ 594
+A VP GA++L ++V+RP +LE AI ++TN A APCVL GM GGGK++LASAVVRD +VR+HF AGIFW RVG+ +K+ LH L GLVL +A+ PP L S+E+VT +L A S RLVVLDDVWE EVV+ALQ T LQLLVTTRDR+VVS+PG +EVGDMEE+EALEVLRVGCGA +ELPR++ALQ
Sbjct: 405 MAAVPRGAISLTDAHVSRPLMLERAIDYLTNTARGDAPCVLTGMAGGGKSVLASAVVRDEKVREHFSAGIFWWRVGRISKDRLHEWLEGLVLRVASASGTTPPMLGSVEEVTFYLKAFCADAESQRLVVLDDVWEPEVVNALQVTELQLLVTTRDRSVVSMPGECIEVGDMEEDEALEVLRVGCGAPKNLELPRLQALQ 603
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE) HSP 1 Score: 216 bits (550), Expect = 2.860e-61 Identity = 116/199 (58.29%), Postives = 148/199 (74.37%), Query Frame = 1
Query: 1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDNDVPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL*AVELPRVEALQ 594
+A VP G ++L +++RPSLL AI ++TN A+ APCVL GM G GK++LASAVV+ +VR+HF AG++W+R ++AK+ LHA L GL L +A+ P L S+E+VTR+L V A S RL+VLDDVWE EVVD L+ TGLQLLVTTRDR+VVS+PG VEVGDME+ EALE+LRVGCGA +ELPR E LQ
Sbjct: 195 MASVPAGPISLTDGHISRPSLLGRAIGYLTNTAVGDAPCVLTGMAGAGKSVLASAVVQVEKVREHFHAGMYWVRA-RDAKDQLHACLEGLALRVASTSGTTAPGLGSVEEVTRYLKAVCADSVSPRLIVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMED-EALELLRVGCGASKNLELPRAEVLQ 391
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 181 bits (460), Expect = 7.830e-48 Identity = 103/184 (55.98%), Postives = 129/184 (70.11%), Query Frame = 1
Query: 1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVL 537
+A VP GA+TL +SYV R ++ E A + P AP + GMGGGGKT+L SAVVR + VR+HFR G+FW+RVG++AK L +LL+GL E++A D VP LESLE V +HL V + G S RLVVLDDVWE EVVDAL GL++LVTTRDR+VV V G +E+GDM E EALE+L
Sbjct: 1 MAAVPAGALTLPQSYVERAAVQEVA-DGLIKPEEPRAPYAVVGMGGGGKTMLVSAVVRKSNVREHFRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELL 183
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 176 bits (446), Expect = 4.990e-45 Identity = 103/192 (53.65%), Postives = 128/192 (66.67%), Query Frame = 1
Query: 1 LADVPVGAVTLG-KSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKGSL-RLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
+A VP GA+ L SYV R ++ E A +T+P AP + GMGGGGK++LASAVVR VR+HFR GIFW+RVG+ AK L ALL+GL E+ A D VP L+ LE V +HL V + G+ RLVVLDDVWE EVVDA G ++L+TTRDR+VV VP +EVGDM E EALE+LR GA+
Sbjct: 205 MAAVPAGALELPCSSYVERAAVQEVA-DGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAV 395
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 174 bits (442), Expect = 7.290e-44 Identity = 100/191 (52.36%), Postives = 123/191 (64.40%), Query Frame = 1
Query: 1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
+A VP AV L S + + +TNP AP + GMGGGGK++LASAVVR + VR+HFR GIFWL VG+ AK+ L LL+GL ++ A D VP L+SLE V RHL V + G S RLVVLDDVWE EVVDAL G ++LVTTRDR+VV VP R +E+GDM E EALE+L G +
Sbjct: 136 MAKVPAEAVALSDSLYVERAAVRKVADGITNPEEPRAPYTVFGMGGGGKSVLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTV 326
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 173 bits (439), Expect = 2.050e-43 Identity = 102/192 (53.12%), Postives = 128/192 (66.67%), Query Frame = 1
Query: 1 LADVPVGAVTL-GKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
+A VP GA+ L SYV R ++ E A +T P AP + GMGGGGK++LASAVVR VR+HFR GIFW+RVG+ AK L ALL+GL ++ A D VP L+SLE V +HL V + G S RLVVLDDVWE EVVDA G ++L+TTRDR+VV VP +E+GD+ E EALE+LR GA+
Sbjct: 242 MAAVPAGALELPSSSYVERAAVQEVA-DGLTAPEESRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAV 432
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 170 bits (431), Expect = 2.050e-42 Identity = 96/190 (50.53%), Postives = 127/190 (66.84%), Query Frame = 1
Query: 4 ADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKGSL-RLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
A VP GA+ L +SYV RP + E A+ + +P AP ++ GMGGGGKT+LASA+VR + V +HFR GIFW+ +G+ A + L L+GL E+ A D VP +SLE V +HL V ++GS RLVVLDDVWE EVV A GL++LVTTRDR++V VPG +E+GDM E+EALE+L G +
Sbjct: 238 AAVPTGALALPRSYVERPGVQE-AMGDLMDPEKALAPYMIVGMGGGGKTVLASALVRKSSVLEHFRGGIFWMEMGRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTV 426
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 170 bits (430), Expect = 2.920e-42 Identity = 99/192 (51.56%), Postives = 125/192 (65.10%), Query Frame = 1
Query: 1 LADVPVGAVTL-GKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
+A VP GA+ L SYV R ++ E A +T P AP + GMGGGGK++LASA VR VR+HFR GIFW+RVG+ AK L ALL+GL ++ A D VP L+ LE V +HL V + G S RLVVLDDVWE EVVDA G ++L+TTRDR+VV +P +E+GDM E EALE+LR G +
Sbjct: 259 MAAVPTGALELPSSSYVERAAVQEVA-DGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTV 449
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 168 bits (426), Expect = 1.010e-41 Identity = 99/192 (51.56%), Postives = 126/192 (65.62%), Query Frame = 1
Query: 1 LADVPVGAVTLG-KSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGA-KGSLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
+A+VPVGA+ L SYV R ++ E A +TNP P + G+GGGGK++LASAVVR VR+HFR GI W+RVG+ AK L LL+GL E+ A D VP L+SLE V +HL V + + S RLVVLDDVWE EVVDA G +LL+TTRDR++V P +E+GDM E EALE+LR G +
Sbjct: 44 MAEVPVGALELPHSSYVERAAVQEVA-DGLTNPEEPRTPYTVVGIGGGGKSVLASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTV 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12124.1346.1 >prot_H-paniculata_contig12124.1346.1 ID=prot_H-paniculata_contig12124.1346.1|Name=mRNA_H-paniculata_contig12124.1346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp MGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLEback to top mRNA from alignment at H-paniculata_contig12124:1005..4124- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12124.1346.1 ID=mRNA_H-paniculata_contig12124.1346.1|Name=mRNA_H-paniculata_contig12124.1346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3120bp|location=Sequence derived from alignment at H-paniculata_contig12124:1005..4124- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12124:1005..4124- >mRNA_H-paniculata_contig12124.1346.1 ID=mRNA_H-paniculata_contig12124.1346.1|Name=mRNA_H-paniculata_contig12124.1346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig12124:1005..4124- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |