mRNA_H-paniculata_contig12124.1346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12124.1346.1
Unique NamemRNA_H-paniculata_contig12124.1346.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 3.150e-71
Identity = 131/209 (62.68%), Postives = 160/209 (76.56%), Query Frame = 1
Query:    1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDNDVPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL*AVELPRVEALQGPPQDPNSWR 624
            +A VP G ++L   +++RPSLL  AI ++TN A+  APCVL GM G GK++LASAVVRD +VR+HF AG+FW+R  ++AK+ LHA L G  L +A+      P L S+E+VTR+L  V A   S RLVVLDDVWE E+VDAL+ TGLQLLVTTRDR+VVS+PG  VEVGDMEE+EALEVLRVGCGA   +ELPR EALQGPPQDP SWR
Sbjct:  214 MASVPAGPISLTDGHISRPSLLGRAIGYLTNTAVGDAPCVLTGMAGAGKSVLASAVVRDEKVREHFHAGMFWVRA-RDAKDQLHACLEGFALRVASTSGTTSPGLGSVEEVTRYLKAVCADSVSPRLVVLDDVWEREIVDALKLTGLQLLVTTRDRSVVSMPGECVEVGDMEEDEALEVLRVGCGASKNLELPRAEALQGPPQDPKSWR 421          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5KF10_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF10_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 1.970e-66
Identity = 124/199 (62.31%), Postives = 153/199 (76.88%), Query Frame = 1
Query:    1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDNDVPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL*AVELPRVEALQ 594
            +A VP GA++L  ++V+RP +LE AI ++TN A   APCVL GM GGGK++LASAVVRD +VR+HF AGIFW RVG+ +K+ LH  L GLVL +A+     PP L S+E+VT +L    A   S RLVVLDDVWE EVV+ALQ T LQLLVTTRDR+VVS+PG  +EVGDMEE+EALEVLRVGCGA   +ELPR++ALQ
Sbjct:  405 MAAVPRGAISLTDAHVSRPLMLERAIDYLTNTARGDAPCVLTGMAGGGKSVLASAVVRDEKVREHFSAGIFWWRVGRISKDRLHEWLEGLVLRVASASGTTPPMLGSVEEVTFYLKAFCADAESQRLVVLDDVWEPEVVNALQVTELQLLVTTRDRSVVSMPGECIEVGDMEEDEALEVLRVGCGAPKNLELPRLQALQ 603          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.860e-61
Identity = 116/199 (58.29%), Postives = 148/199 (74.37%), Query Frame = 1
Query:    1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDNDVPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL*AVELPRVEALQ 594
            +A VP G ++L   +++RPSLL  AI ++TN A+  APCVL GM G GK++LASAVV+  +VR+HF AG++W+R  ++AK+ LHA L GL L +A+      P L S+E+VTR+L  V A   S RL+VLDDVWE EVVD L+ TGLQLLVTTRDR+VVS+PG  VEVGDME+ EALE+LRVGCGA   +ELPR E LQ
Sbjct:  195 MASVPAGPISLTDGHISRPSLLGRAIGYLTNTAVGDAPCVLTGMAGAGKSVLASAVVQVEKVREHFHAGMYWVRA-RDAKDQLHACLEGLALRVASTSGTTAPGLGSVEEVTRYLKAVCADSVSPRLIVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMED-EALELLRVGCGASKNLELPRAEVLQ 391          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 7.830e-48
Identity = 103/184 (55.98%), Postives = 129/184 (70.11%), Query Frame = 1
Query:    1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVL 537
            +A VP GA+TL +SYV R ++ E A   +  P    AP  + GMGGGGKT+L SAVVR + VR+HFR G+FW+RVG++AK  L +LL+GL  E++A   D    VP  LESLE V +HL  V + G S RLVVLDDVWE EVVDAL   GL++LVTTRDR+VV V G  +E+GDM E EALE+L
Sbjct:    1 MAAVPAGALTLPQSYVERAAVQEVA-DGLIKPEEPRAPYAVVGMGGGGKTMLVSAVVRKSNVREHFRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELL 183          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.990e-45
Identity = 103/192 (53.65%), Postives = 128/192 (66.67%), Query Frame = 1
Query:    1 LADVPVGAVTLG-KSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKGSL-RLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
            +A VP GA+ L   SYV R ++ E A   +T+P    AP  + GMGGGGK++LASAVVR   VR+HFR GIFW+RVG+ AK  L ALL+GL  E+ A   D    VP  L+ LE V +HL  V + G+  RLVVLDDVWE EVVDA    G ++L+TTRDR+VV VP   +EVGDM E EALE+LR   GA+
Sbjct:  205 MAAVPAGALELPCSSYVERAAVQEVA-DGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAV 395          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 7.290e-44
Identity = 100/191 (52.36%), Postives = 123/191 (64.40%), Query Frame = 1
Query:    1 LADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
            +A VP  AV L  S     + +      +TNP    AP  + GMGGGGK++LASAVVR + VR+HFR GIFWL VG+ AK+ L  LL+GL  ++ A   D    VP  L+SLE V RHL  V + G S RLVVLDDVWE EVVDAL   G ++LVTTRDR+VV VP R +E+GDM E EALE+L    G +
Sbjct:  136 MAKVPAEAVALSDSLYVERAAVRKVADGITNPEEPRAPYTVFGMGGGGKSVLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTV 326          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 2.050e-43
Identity = 102/192 (53.12%), Postives = 128/192 (66.67%), Query Frame = 1
Query:    1 LADVPVGAVTL-GKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
            +A VP GA+ L   SYV R ++ E A   +T P    AP  + GMGGGGK++LASAVVR   VR+HFR GIFW+RVG+ AK  L ALL+GL  ++ A   D    VP  L+SLE V +HL  V + G S RLVVLDDVWE EVVDA    G ++L+TTRDR+VV VP   +E+GD+ E EALE+LR   GA+
Sbjct:  242 MAAVPAGALELPSSSYVERAAVQEVA-DGLTAPEESRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAV 432          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.050e-42
Identity = 96/190 (50.53%), Postives = 127/190 (66.84%), Query Frame = 1
Query:    4 ADVPVGAVTLGKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKGSL-RLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
            A VP GA+ L +SYV RP + E A+  + +P    AP ++ GMGGGGKT+LASA+VR + V +HFR GIFW+ +G+ A + L   L+GL  E+ A   D    VP   +SLE V +HL  V ++GS  RLVVLDDVWE EVV A    GL++LVTTRDR++V VPG  +E+GDM E+EALE+L    G +
Sbjct:  238 AAVPTGALALPRSYVERPGVQE-AMGDLMDPEKALAPYMIVGMGGGGKTVLASALVRKSSVLEHFRGGIFWMEMGRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTV 426          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 2.920e-42
Identity = 99/192 (51.56%), Postives = 125/192 (65.10%), Query Frame = 1
Query:    1 LADVPVGAVTL-GKSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGAKG-SLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
            +A VP GA+ L   SYV R ++ E A   +T P    AP  + GMGGGGK++LASA VR   VR+HFR GIFW+RVG+ AK  L ALL+GL  ++ A   D    VP  L+ LE V +HL  V + G S RLVVLDDVWE EVVDA    G ++L+TTRDR+VV +P   +E+GDM E EALE+LR   G +
Sbjct:  259 MAAVPTGALELPSSSYVERAAVQEVA-DGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTV 449          
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.010e-41
Identity = 99/192 (51.56%), Postives = 126/192 (65.62%), Query Frame = 1
Query:    1 LADVPVGAVTLG-KSYVTRPSLLESAISHVTNPALVHAPCVLAGMGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLELAARDND----VPPQLESLEDVTRHLTRVGA-KGSLRLVVLDDVWEGEVVDALQQTGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL 558
            +A+VPVGA+ L   SYV R ++ E A   +TNP     P  + G+GGGGK++LASAVVR   VR+HFR GI W+RVG+ AK  L  LL+GL  E+ A   D    VP  L+SLE V +HL  V + + S RLVVLDDVWE EVVDA    G +LL+TTRDR++V  P   +E+GDM E EALE+LR   G +
Sbjct:   44 MAEVPVGALELPHSSYVERAAVQEVA-DGLTNPEEPRTPYTVVGIGGGGKSVLASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTV 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12124.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W2_ECTSI3.150e-7162.68NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KF10_9PHAE1.970e-6662.31NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KMV3_9PHAE2.860e-6158.29NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5LJA6_9PHAE7.830e-4855.98NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KXS7_9PHAE4.990e-4553.65NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE7.290e-4452.36NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G720_ECTSI2.050e-4353.13NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPV9_ECTSI2.050e-4250.53NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7G722_ECTSI2.920e-4251.56NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FUD7_ECTSI1.010e-4151.56NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12124contigH-paniculata_contig12124:1005..4124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue2.1e-41
Seed eggNOG ortholog2880.D7G6W2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons4
Model size1300
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12124.1346.1prot_H-paniculata_contig12124.1346.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12124 3564..3995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.506211-UTR-H-paniculata_contig12124:1004..11211622928931.506211-UTR-H-paniculata_contig12124:1004..1121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 1005..1121 -
1691480672.1059518-UTR-H-paniculata_contig12124:1004..11211691480672.1059518-UTR-H-paniculata_contig12124:1004..1121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 1005..1121 -
1622928931.5251274-UTR-H-paniculata_contig12124:2001..23631622928931.5251274-UTR-H-paniculata_contig12124:2001..2363Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 2002..2363 -
1691480672.1180856-UTR-H-paniculata_contig12124:2001..23631691480672.1180856-UTR-H-paniculata_contig12124:2001..2363Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 2002..2363 -
1622928931.5426285-UTR-H-paniculata_contig12124:3020..32471622928931.5426285-UTR-H-paniculata_contig12124:3020..3247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 3021..3247 -
1691480672.1278064-UTR-H-paniculata_contig12124:3020..32471691480672.1278064-UTR-H-paniculata_contig12124:3020..3247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 3021..3247 -
1622928931.5569453-UTR-H-paniculata_contig12124:3530..35631622928931.5569453-UTR-H-paniculata_contig12124:3530..3563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 3531..3563 -
1691480672.134802-UTR-H-paniculata_contig12124:3530..35631691480672.134802-UTR-H-paniculata_contig12124:3530..3563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 3531..3563 -
1622928931.6023276-UTR-H-paniculata_contig12124:3995..41241622928931.6023276-UTR-H-paniculata_contig12124:3995..4124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 3996..4124 -
1691480672.1497335-UTR-H-paniculata_contig12124:3995..41241691480672.1497335-UTR-H-paniculata_contig12124:3995..4124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12124 3996..4124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928931.589879-CDS-H-paniculata_contig12124:3563..39951622928931.589879-CDS-H-paniculata_contig12124:3563..3995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12124 3564..3995 -
1691480672.1421654-CDS-H-paniculata_contig12124:3563..39951691480672.1421654-CDS-H-paniculata_contig12124:3563..3995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12124 3564..3995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12124.1346.1

>prot_H-paniculata_contig12124.1346.1 ID=prot_H-paniculata_contig12124.1346.1|Name=mRNA_H-paniculata_contig12124.1346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MGGGGKTILASAVVRDTRVRKHFRAGIFWLRVGQNAKEDLHALLRGLVLE
LAARDNDVPPQLESLEDVTRHLTRVGAKGSLRLVVLDDVWEGEVVDALQQ
TGLQLLVTTRDRAVVSVPGRSVEVGDMEENEALEVLRVGCGAL*
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mRNA from alignment at H-paniculata_contig12124:1005..4124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12124.1346.1 ID=mRNA_H-paniculata_contig12124.1346.1|Name=mRNA_H-paniculata_contig12124.1346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3120bp|location=Sequence derived from alignment at H-paniculata_contig12124:1005..4124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGCTGACGTACCTGTAGGCGCGGTCACCCTAGGTAAATCATACGTGAC GCGACCTTCGTTACTGGAGAGCGCCATCAGCCACGTCACGAATCCGGCCC TGGTCCATGCTCCCTGTGTGCTTGCCGGTATGGGCGGAGGGGGCAAGACA ATCCTGGCGTCCGCGGTTGTACGGGATACGAGGGTTCGAAAGCACTTTCG TGCGGGAATATTTTGGCTGAGGGTGGGACAAAACGCTAAGGAAGATCTTC ATGCTTTGTTACGAGGGCTGGTCTTGGAGTTGGCAGCAAGAGACAACGAC GTTCCTCCCCAGCTCGAAAGCTTGGAAGACGTGACGCGTCACCTAACTAG AGTTGGTGCAAAAGGCTCACTGCGCTTGGTCGTGTTGGACGACGTGTGGG AGGGGGAAGTCGTGGATGCTCTACAACAGACGGGGTTGCAGCTGCTGGTA ACCACGCGCGACCGTGCCGTGGTATCTGTGCCAGGAAGGTCCGTTGAGGT AGGGGATATGGAGGAGAACGAGGCGCTGGAGGTTCTGAGGGTCGGCTGTG GAGCGTTGTAAGCAGTTGAACTTCCGCGAGTGGAAGCATTGCAGGTGACA AGTCTGGTCTTGCGTGTTGATTTCTGGTGGCGGACAGATCCTAACATCTG TAATATCATACATCGTAGCACATATTTGGGAGGACAGCTTGGTGCCTCGG ACAGCGTTCGTGTATCCACCCGCCGTATTCGGCTGTTGGCGGTAGTTTTG CGGTTGTTCCCAGGATCCAGGTTACGGTTGATCGCACTTGACAAAAATGT CCACCTCGTCGTTCCAGGCCGCCGCTGACTATGGGAAGCTGGCTCTCGCG CTTGACGTCGCCGCGCCGCTGTTAAAGGGCCCTCCACAAGATCCGAATTC TTGGCGCATTTACATGATGCTTTGGCAGTGCGATTGAGGACGCACCGTGC CAGGACTGTAGAAGCACGCGTGCAAGCTATCCTTGAGACAAGCTTCGGTG CCATGGCAGACGACCCCGGCAGGCAGGAGAGATACGTGTTCCTTGCGGTA CTTGCTCCGGGTACGCTTGCACCACCCGACATGTTACAGGATTTGTGGAA CGAGGTGCGGTGCTGAGGTAGGGGAAGAGTAGGAGGAGTAGCCTGGCATA GTGCAGTAGTTGGTGTCATGCCCAGAGTATGTTTCTCGACGCCAGCAGGC GGAGGTATGCCGCGTTTCACTTGTGTTAGTCTACGAAACGTGTCGGGAAT ATTCTTCTTGATGTCCAACATGGCGAGTGCTTACTCTCTATGATCTACGC AAGCTCGCTGAATCCACGTTAAGGTTCACGCCACGGATGTTCTCAGAAGC TCAAATCCGGTAGTTCGCAGTGTCTGACTACGGTGAACAGATCCGCAGAT GACGCAAAGTCACGATCAGGAGAGTTGGGAGAGAGTTGATTTTTGTTTCA TGCCCATAAGTAGTTGCTCCGAAGTGCCCTCCATGCCAACACACTGCACA CCCAGGAATAGGACCAGGATGTGACCAGTCGACTGCACCTATCTCCAAGG GCTTATTGGCTGACTTCACATGGTGAATGTTTGCAGATCGGTGGACGCTT GTGCGCAGAGCAGAACTGGTCATGAACAAGACGCTGTTGATGGGACACGT TGACCTATGATTCGACTACTGGTTGCGCGATTCAAGTTTGTGATATTTTC GCCGTGAGGTTTCATTCTTCTTGGTGTTCTCCCGTGTATTCAGATTACGC CTCCTCAACAGGCCCCTGGGGCTGCGCGCACATTTGCTAAAGAGCTTGTG GATCAGTCCATGCTCCAAGCTGTAGGAGATGCTACCGCGTTCACGACCTT GTCTTGCGTTTCCTGAAGCCCAAACTCAAGGTCGATCCCAGTCGGCTCGT AGCAACCTCGCGTGCTGTGGAATACTGCGGCCAGCTAAGGGTTCTACATA GATATACCGAGGATGGGGCGACAGCTGGCGGTTTGTACTCCCTGATCGCC CTTTGGAGGTCGGCGGAGAGCCTCTCGGAGGAGCACCAAGTTGCAGCTGC CTACAAGAGGAGCCTGGACGGGGAAACGAAGGGTGAACCGTGGCTGCAGG CTAGCCGTGTGCTAGAGCTCATGGTGCGGCGCGTGTTGACCCTTTTTGCT TTGAGTGAATGGCTGTGATCGATCCGTCTTCAAAGATGGTCTGCTTGAGT CAACGTGTAGGGGTGTAAAAAACGTGCTCTTTAGGGTACGTTTTGTCAAG TAGTTTTGTGGACACCGACTTGGGGTCGTGCATGTCGTGTCACCGTGCTT GTTCAAATTTCTTGTCATGAAGGGAAGTAGGATTTCCATATGACCTGTAT GATACACAACGTCTTGGTGTAGCACACAATATTACACGAGGCGACCAGAA TTTCTATGAAATCCCCAATTTATCCTCAACGGATCACAACCGGCTGGAAA TATTTGAAAGTTTCCATTCAGCTGGGAAAACGCGCAGAGTGAACTACGGG AGCTTTCGACACGTACGCAAACGCTGTCTGTGCTGTCGACTAAATGTAAC CATGATGATGCCGCAGAGGATGGCCCACGCTGCAAACACACGTGCAGAGA AGCTCTCGCGCACACAAATGTCTCTGCGAAGTAAGGAGTGCTGTTACATA AAACACGTGCGTATGTAGCAAGTGCTGATTACCTTACATATCGAGCTGTG CATTTCTTGAAACGAGAATCCATGTCCTTCGCCGAGAATGTATACCGGTG GCACATAAGTGGACTGTAGCTGTGTTGTAGAGATCTCTACCGACAGTCCA CACCCGGAATCGCTTGAGAGAGCATGTATGACCACGCGGGTGTTGTATCG AGGCGTTCGTGCAGTTCATGATCATGCAGTCTGTCCTAATCATCCAAAAG TAGGCGAACTCCTCAAACTGAGGCAGCTTTGTTTGAAATCTGTGGTGGTT GGCCTTAGCTTACCCTTGCTTTTGCACTTTGCGTGGCTAACGCTCATATG AAGGGGAGGTACGCGGAAGCGGAGCCGCTATGTGAGCACTCCCTCGACAT CTTCGAGAAGGCTCTCGGCCCCGCACATCCCACTGTGGCTCGATCACTAA AGCACTGGGCGATGTTGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig12124:1005..4124-

>mRNA_H-paniculata_contig12124.1346.1 ID=mRNA_H-paniculata_contig12124.1346.1|Name=mRNA_H-paniculata_contig12124.1346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig12124:1005..4124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGGAGGGGGCAAGACAATCCTGGCGTCCGCGGTTGTACGGGATAC
GAGGGTTCGAAAGCACTTTCGTGCGGGAATATTTTGGCTGAGGGTGGGAC
AAAACGCTAAGGAAGATCTTCATGCTTTGTTACGAGGGCTGGTCTTGGAG
TTGGCAGCAAGAGACAACGACGTTCCTCCCCAGCTCGAAAGCTTGGAAGA
CGTGACGCGTCACCTAACTAGAGTTGGTGCAAAAGGCTCACTGCGCTTGG
TCGTGTTGGACGACGTGTGGGAGGGGGAAGTCGTGGATGCTCTACAACAG
ACGGGGTTGCAGCTGCTGGTAACCACGCGCGACCGTGCCGTGGTATCTGT
GCCAGGAAGGTCCGTTGAGGTAGGGGATATGGAGGAGAACGAGGCGCTGG
AGGTTCTGAGGGTCGGCTGTGGAGCGTTGTAAATGGGCGGAGGGGGCAAG
ACAATCCTGGCGTCCGCGGTTGTACGGGATACGAGGGTTCGAAAGCACTT
TCGTGCGGGAATATTTTGGCTGAGGGTGGGACAAAACGCTAAGGAAGATC
TTCATGCTTTGTTACGAGGGCTGGTCTTGGAGTTGGCAGCAAGAGACAAC
GACGTTCCTCCCCAGCTCGAAAGCTTGGAAGACGTGACGCGTCACCTAAC
TAGAGTTGGTGCAAAAGGCTCACTGCGCTTGGTCGTGTTGGACGACGTGT
GGGAGGGGGAAGTCGTGGATGCTCTACAACAGACGGGGTTGCAGCTGCTG
GTAACCACGCGCGACCGTGCCGTGGTATCTGTGCCAGGAAGGTCCGTTGA
GGTAGGGGATATGGAGGAGAACGAGGCGCTGGAGGTTCTGAGGGTCGGCT
GTGGAGCGTTGTAA
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