mRNA_H-paniculata_contig12104.1336.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12104.1336.1
Unique NamemRNA_H-paniculata_contig12104.1336.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12104.1336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12104contigH-paniculata_contig12104:213..561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size349
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.5366464-UTR-H-paniculata_contig12104:212..2371622928929.5366464-UTR-H-paniculata_contig12104:212..237Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12104 213..237 +
1691480671.325999-UTR-H-paniculata_contig12104:212..2371691480671.325999-UTR-H-paniculata_contig12104:212..237Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12104 213..237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.5512834-CDS-H-paniculata_contig12104:237..5611622928929.5512834-CDS-H-paniculata_contig12104:237..561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12104 238..561 +
1691480671.3378658-CDS-H-paniculata_contig12104:237..5611691480671.3378658-CDS-H-paniculata_contig12104:237..561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12104 238..561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12104.1336.1prot_H-paniculata_contig12104.1336.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12104 238..561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12104.1336.1

>prot_H-paniculata_contig12104.1336.1 ID=prot_H-paniculata_contig12104.1336.1|Name=mRNA_H-paniculata_contig12104.1336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MATVSHANSISFIPVNEKSSINNESPYVYCSFRTSSGTDASIPISAQMSA
PLWAACNLVTSPCGCPGIIPVGPAAVHSSRCASLSPRKGMDASSPVPASE
DDGTGLS*
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mRNA from alignment at H-paniculata_contig12104:213..561+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12104.1336.1 ID=mRNA_H-paniculata_contig12104.1336.1|Name=mRNA_H-paniculata_contig12104.1336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=349bp|location=Sequence derived from alignment at H-paniculata_contig12104:213..561+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTCGTTCGTAATGTAGGCTGACATGGCTACTGTCTCGCATGCAAACT
CAATCTCGTTCATACCCGTCAACGAAAAATCATCAATCAACAACGAGTCA
CCATACGTGTACTGCAGTTTCCGGACATCCTCAGGCACCGACGCCTCGAT
CCCGATATCCGCGCAGATGAGTGCCCCACTGTGGGCAGCATGCAACCTAG
TCACATCACCATGTGGATGTCCCGGCATAATCCCCGTCGGTCCTGCCGCT
GTCCACTCGAGTCGGTGTGCTTCCCTCTCACCTAGAAAAGGGATGGATGC
ATCTTCACCGGTCCCCGCATCAGAGGATGACGGTACCGGACTCTCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12104:213..561+

>mRNA_H-paniculata_contig12104.1336.1 ID=mRNA_H-paniculata_contig12104.1336.1|Name=mRNA_H-paniculata_contig12104.1336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig12104:213..561+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACTGTCTCGCATGCAAACTCAATCTCGTTCATACCCGTCAACGA
AAAATCATCAATCAACAACGAGTCACCATACGTGTACTGCAGTTTCCGGA
CATCCTCAGGCACCGACGCCTCGATCCCGATATCCGCGCAGATGAGTGCC
CCACTGTGGGCAGCATGCAACCTAGTCACATCACCATGTGGATGTCCCGG
CATAATCCCCGTCGGTCCTGCCGCTGTCCACTCGAGTCGGTGTGCTTCCC
TCTCACCTAGAAAAGGGATGGATGCATCTTCACCGGTCCCCGCATCAGAG
GATGACGGTACCGGACTCTCGTGAATGGCTACTGTCTCGCATGCAAACTC
AATCTCGTTCATACCCGTCAACGAAAAATCATCAATCAACAACGAGTCAC
CATACGTGTACTGCAGTTTCCGGACATCCTCAGGCACCGACGCCTCGATC
CCGATATCCGCGCAGATGAGTGCCCCACTGTGGGCAGCATGCAACCTAGT
CACATCACCATGTGGATGTCCCGGCATAATCCCCGTCGGTCCTGCCGCTG
TCCACTCGAGTCGGTGTGCTTCCCTCTCACCTAGAAAAGGGATGGATGCA
TCTTCACCGGTCCCCGCATCAGAGGATGACGGTACCGGACTCTCGTGA
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