mRNA_H-paniculata_contig1210.1332.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1210.1332.1
Unique NamemRNA_H-paniculata_contig1210.1332.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1210.1332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1210contigH-paniculata_contig1210:4981..6472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_002370.1
Exons3
Model size201
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1210.1332.1prot_H-paniculata_contig1210.1332.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1210 4998..6472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.6799762-UTR-H-paniculata_contig1210:4980..49971622928928.6799762-UTR-H-paniculata_contig1210:4980..4997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1210 4981..4997 +
1691480670.9272807-UTR-H-paniculata_contig1210:4980..49971691480670.9272807-UTR-H-paniculata_contig1210:4980..4997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1210 4981..4997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.6955926-CDS-H-paniculata_contig1210:4997..50081622928928.6955926-CDS-H-paniculata_contig1210:4997..5008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 4998..5008 +
1691480670.93839-CDS-H-paniculata_contig1210:4997..50081691480670.93839-CDS-H-paniculata_contig1210:4997..5008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 4998..5008 +
1622928928.7182913-CDS-H-paniculata_contig1210:5820..59381622928928.7182913-CDS-H-paniculata_contig1210:5820..5938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 5821..5938 +
1691480670.947242-CDS-H-paniculata_contig1210:5820..59381691480670.947242-CDS-H-paniculata_contig1210:5820..5938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 5821..5938 +
1622928928.7332196-CDS-H-paniculata_contig1210:6418..64721622928928.7332196-CDS-H-paniculata_contig1210:6418..6472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 6419..6472 +
1691480670.9555862-CDS-H-paniculata_contig1210:6418..64721691480670.9555862-CDS-H-paniculata_contig1210:6418..6472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 6419..6472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1210.1332.1

>prot_H-paniculata_contig1210.1332.1 ID=prot_H-paniculata_contig1210.1332.1|Name=mRNA_H-paniculata_contig1210.1332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MRRCRVLLLLAAQGKGVLEENFDGPSAHNGFSGQRAGGFGAMKEWRKLSV
KHKHRLTSSMR
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mRNA from alignment at H-paniculata_contig1210:4981..6472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1210.1332.1 ID=mRNA_H-paniculata_contig1210.1332.1|Name=mRNA_H-paniculata_contig1210.1332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-paniculata_contig1210:4981..6472+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGAACAAGCCAGATATGCGAAGATGGTGAACTTTTCTGCGGCTGACT
CTGTATGTTCCTCGTTATGCTACTCAGCACGCACCCCATACTCTTCGCGG
GTGTACATGTACATGTGTTTCCTTTGTCTCGTAAGTATACTCAGTTATGA
ATGTAGAGGCACTTGAACATGCCCGATTTAAAAAAATGGAATTCTACATG
TTTTTTTAGGTTGCAACCCAATTTTTGGGGTCAAACATTTAACTAATAAC
ATCAAAACATGCGCTGCGAAAAAATGTAGCTGGCCGACAAAGGCCATCTT
TGGGGACTTTTCCCCGTAGAACTCGAAAAAAAAAGTGCACTTTTTCGGGT
TTTTCGGCCGAGTGCCTTTTTTCACGGCGTGTGTTTTGGTGTTAAAAGTC
ACCTATTTGACTTAATACTTTGGGTTTCTAGTGTTTTTTGTTTTTTTTAA
ATCGGAGATTGTTTTAAGTGCGTCTCTAATCACGACATACTGTACTTGTC
GAACAATACCAAGAGTCTCAAAAACGGGCCTTTTTTCAGCCGAGCAATTT
TTTTCACGGCTCGTGTTTTGGTGTTAACAGTCGATTGTTTGACCCAAAAA
ATTGGTCTTCAACCCAAACAACATGTAGAAATCCATTAGAAAAAAAGAGG
AGGTATCTAAGTGCCTCTAAAATCACAACTGAGTAAGTTGTGCGAAAGGT
GAAGTGTATATAGATATAAATAAATGTACTGTCTTTCACACGACATCATC
CATTCCCTGGTCACGGTACTACATAGTCAAGTGCATGTGCTTATCATATG
GTAACGATGGCCCACCACATTTCTCCCTCCTTTGGTCAAGCCGAGTGTTA
TTGCTGTTGGCGGCGCAAGGAAAAGGCGTTTTAGAAGAGAACTTTGACGG
TCCCAGTGCTCACAATGGGTTTTCGGGACAGCGAGCCGGCGGCTTTGGGG
CAATGAAGGCACGTTTCTCAGCGTTTTGTGTATGTTTTGGCTAAAAACGA
AAACGTTTCACGCGTTGGTGGTAATCATATGACCGCCCCCACGTGTAGAC
TGTGGGAGATTGTGATGTGGAGGATATTACCAGCTTACGTTCCTTCTACT
TACTCATCGAGACAGATAGGGCTGGATGTTTAAGTCAAAGCGACCATCTC
TGCGCAACTCAGCAAATACCAAATCCATCAGCATATCATCATTCTACATT
CCAGGGACTTGGTGAAAACACAACGCCACATCTTGGAACACATGAGCTTT
AGAACGCAGCGAGGAGCATCCATACACGATGCAATAGAATCGATTGGAAG
GTATTGTGTCGCTAGTGGTATAATAGCGCTAAAATCAAGTTTTAAACTCT
CGCACAGGCAAGCTTCTTGCTGTTAACAGAGTTATCCATTCGAACTTGAT
TGGTCTATCCTTTCGAATCTGCGTCTATTTATGCACAGGAATGGCGCAAA
TTGTCGGTCAAGCACAAGCATAGATTGACCAGCTCAATGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1210:4981..6472+

>mRNA_H-paniculata_contig1210.1332.1 ID=mRNA_H-paniculata_contig1210.1332.1|Name=mRNA_H-paniculata_contig1210.1332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig1210:4981..6472+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAAGATGATGCGAAGATGCCGAGTGTTATTGCTGTTGGCGGCGCAA
GGAAAAGGCGTTTTAGAAGAGAACTTTGACGGTCCCAGTGCTCACAATGG
GTTTTCGGGACAGCGAGCCGGCGGCTTTGGGGCAATGAAGCCGAGTGTTA
TTGCTGTTGGCGGCGCAAGGAAAAGGCGTTTTAGAAGAGAACTTTGACGG
TCCCAGTGCTCACAATGGGTTTTCGGGACAGCGAGCCGGCGGCTTTGGGG
CAATGAAGGAATGGCGCAAATTGTCGGTCAAGCACAAGCATAGATTGACC
AGCTCAATGCGAGAATGGCGCAAATTGTCGGTCAAGCACAAGCATAGATT
GACCAGCTCAATGCGA
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