mRNA_H-paniculata_contig1210.1331.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1210.1331.1
Unique NamemRNA_H-paniculata_contig1210.1331.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1210.1331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1210contigH-paniculata_contig1210:4572..5012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.5697072-CDS-H-paniculata_contig1210:4571..50121622928928.5697072-CDS-H-paniculata_contig1210:4571..5012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 4572..5012 +
1691480670.8986628-CDS-H-paniculata_contig1210:4571..50121691480670.8986628-CDS-H-paniculata_contig1210:4571..5012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 4572..5012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1210.1331.1prot_H-paniculata_contig1210.1331.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1210 4572..5012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1210.1331.1

>prot_H-paniculata_contig1210.1331.1 ID=prot_H-paniculata_contig1210.1331.1|Name=mRNA_H-paniculata_contig1210.1331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
RISEHGDNSRRLQQAAEDLRHMEAEYLHLQQEVQTGTRGLSSKISQPEQH
SQPPLVQESTNINSALSSNGENRNKTGGGEESLDTTEHSATVTARTIRLE
EPGGNEENCHLRYDGHISLGQTTAASPNKHFQPYSWPTNKPDMRRW*
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mRNA from alignment at H-paniculata_contig1210:4572..5012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1210.1331.1 ID=mRNA_H-paniculata_contig1210.1331.1|Name=mRNA_H-paniculata_contig1210.1331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig1210:4572..5012+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATTTCGGAGCATGGCGATAATTCCCGTAGGCTCCAACAGGCGGCGGA
AGACCTTCGGCATATGGAGGCAGAATACTTGCACTTACAGCAAGAGGTCC
AGACTGGAACACGAGGCTTGAGTTCTAAGATATCACAACCCGAGCAGCAC
TCTCAACCACCCCTCGTCCAAGAAAGCACCAACATAAATTCCGCCCTCTC
CTCTAATGGGGAAAATAGAAATAAGACCGGTGGAGGAGAAGAAAGCCTGG
ATACTACCGAACACTCTGCAACAGTGACTGCACGAACAATACGGTTGGAA
GAGCCTGGAGGAAACGAGGAGAACTGCCACCTTCGGTATGATGGGCACAT
CAGCTTAGGCCAAACGACTGCCGCCAGCCCCAACAAGCATTTTCAACCCT
ACTCCTGGCCGACGAACAAGCCAGATATGCGAAGATGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1210:4572..5012+

>mRNA_H-paniculata_contig1210.1331.1 ID=mRNA_H-paniculata_contig1210.1331.1|Name=mRNA_H-paniculata_contig1210.1331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig1210:4572..5012+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATTTCGGAGCATGGCGATAATTCCCGTAGGCTCCAACAGGCGGCGGA
AGACCTTCGGCATATGGAGGCAGAATACTTGCACTTACAGCAAGAGGTCC
AGACTGGAACACGAGGCTTGAGTTCTAAGATATCACAACCCGAGCAGCAC
TCTCAACCACCCCTCGTCCAAGAAAGCACCAACATAAATTCCGCCCTCTC
CTCTAATGGGGAAAATAGAAATAAGACCGGTGGAGGAGAAGAAAGCCTGG
ATACTACCGAACACTCTGCAACAGTGACTGCACGAACAATACGGTTGGAA
GAGCCTGGAGGAAACGAGGAGAACTGCCACCTTCGGTATGATGGGCACAT
CAGCTTAGGCCAAACGACTGCCGCCAGCCCCAACAAGCATTTTCAACCCT
ACTCCTGGCCGACGAACAAGCCAGATATGCGAAGATGGTGAAGAATTTCG
GAGCATGGCGATAATTCCCGTAGGCTCCAACAGGCGGCGGAAGACCTTCG
GCATATGGAGGCAGAATACTTGCACTTACAGCAAGAGGTCCAGACTGGAA
CACGAGGCTTGAGTTCTAAGATATCACAACCCGAGCAGCACTCTCAACCA
CCCCTCGTCCAAGAAAGCACCAACATAAATTCCGCCCTCTCCTCTAATGG
GGAAAATAGAAATAAGACCGGTGGAGGAGAAGAAAGCCTGGATACTACCG
AACACTCTGCAACAGTGACTGCACGAACAATACGGTTGGAAGAGCCTGGA
GGAAACGAGGAGAACTGCCACCTTCGGTATGATGGGCACATCAGCTTAGG
CCAAACGACTGCCGCCAGCCCCAACAAGCATTTTCAACCCTACTCCTGGC
CGACGAACAAGCCAGATATGCGAAGATGGTGA
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