mRNA_H-paniculata_contig1210.1330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1210.1330.1
Unique NamemRNA_H-paniculata_contig1210.1330.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1210.1330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1210contigH-paniculata_contig1210:1898..2176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size280
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.608361-UTR-H-paniculata_contig1210:1897..19751622928928.608361-UTR-H-paniculata_contig1210:1897..1975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1210 1898..1975 +
1691480670.907273-UTR-H-paniculata_contig1210:1897..19751691480670.907273-UTR-H-paniculata_contig1210:1897..1975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1210 1898..1975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928928.6256902-CDS-H-paniculata_contig1210:1975..21761622928928.6256902-CDS-H-paniculata_contig1210:1975..2176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 1976..2176 +
1691480670.9158194-CDS-H-paniculata_contig1210:1975..21761691480670.9158194-CDS-H-paniculata_contig1210:1975..2176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1210 1976..2176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1210.1330.1prot_H-paniculata_contig1210.1330.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1210 1976..2176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1210.1330.1

>prot_H-paniculata_contig1210.1330.1 ID=prot_H-paniculata_contig1210.1330.1|Name=mRNA_H-paniculata_contig1210.1330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MRKRVEGNNRNFSTVSSLAMTVDEIQAIARTDLVTLRTFLLPSSSGVAIS
FTELLFRVVRRCKREDQ
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mRNA from alignment at H-paniculata_contig1210:1898..2176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1210.1330.1 ID=mRNA_H-paniculata_contig1210.1330.1|Name=mRNA_H-paniculata_contig1210.1330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig1210:1898..2176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAGACTCAACATGATACCTCACTGATCGCAGTAATTGATAACCGGTGG
TCACATTATTACCCCCCAACGTGCGAGAATGCGAAAGCGGGTTGAGGGCA
ACAACCGAAACTTTTCGACAGTATCTTCGTTAGCGATGACTGTTGACGAA
ATCCAAGCCATAGCGAGGACAGATTTGGTCACCCTGAGGACCTTTCTCCT
GCCAAGCTCTTCCGGAGTCGCGATTTCTTTCACAGAGCTTCTTTTTAGAG
TCGTGCGGAGATGTAAGCGGGAAGACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1210:1898..2176+

>mRNA_H-paniculata_contig1210.1330.1 ID=mRNA_H-paniculata_contig1210.1330.1|Name=mRNA_H-paniculata_contig1210.1330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig1210:1898..2176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAAAGCGGGTTGAGGGCAACAACCGAAACTTTTCGACAGTATCTTC
GTTAGCGATGACTGTTGACGAAATCCAAGCCATAGCGAGGACAGATTTGG
TCACCCTGAGGACCTTTCTCCTGCCAAGCTCTTCCGGAGTCGCGATTTCT
TTCACAGAGCTTCTTTTTAGAGTCGTGCGGAGATGTAAGCGGGAAGACCA
GATGCGAAAGCGGGTTGAGGGCAACAACCGAAACTTTTCGACAGTATCTT
CGTTAGCGATGACTGTTGACGAAATCCAAGCCATAGCGAGGACAGATTTG
GTCACCCTGAGGACCTTTCTCCTGCCAAGCTCTTCCGGAGTCGCGATTTC
TTTCACAGAGCTTCTTTTTAGAGTCGTGCGGAGATGTAAGCGGGAAGACC
AG
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