mRNA_H-paniculata_contig12093.1325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12093.1325.1
Unique NamemRNA_H-paniculata_contig12093.1325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12093.1325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12093contigH-paniculata_contig12093:2638..4547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size655
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12093.1325.1prot_H-paniculata_contig12093.1325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12093 3056..4390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.8520837-UTR-H-paniculata_contig12093:2637..27781622928925.8520837-UTR-H-paniculata_contig12093:2637..2778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12093 2638..2778 +
1691480669.4869537-UTR-H-paniculata_contig12093:2637..27781691480669.4869537-UTR-H-paniculata_contig12093:2637..2778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12093 2638..2778 +
1622928925.8698459-UTR-H-paniculata_contig12093:3040..30551622928925.8698459-UTR-H-paniculata_contig12093:3040..3055Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12093 3041..3055 +
1691480669.4959092-UTR-H-paniculata_contig12093:3040..30551691480669.4959092-UTR-H-paniculata_contig12093:3040..3055Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12093 3041..3055 +
1622928925.922171-UTR-H-paniculata_contig12093:4390..45471622928925.922171-UTR-H-paniculata_contig12093:4390..4547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12093 4391..4547 +
1691480669.5281298-UTR-H-paniculata_contig12093:4390..45471691480669.5281298-UTR-H-paniculata_contig12093:4390..4547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12093 4391..4547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928925.8846734-CDS-H-paniculata_contig12093:3055..32021622928925.8846734-CDS-H-paniculata_contig12093:3055..3202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12093 3056..3202 +
1691480669.5042882-CDS-H-paniculata_contig12093:3055..32021691480669.5042882-CDS-H-paniculata_contig12093:3055..3202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12093 3056..3202 +
1622928925.8993993-CDS-H-paniculata_contig12093:4195..43901622928925.8993993-CDS-H-paniculata_contig12093:4195..4390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12093 4196..4390 +
1691480669.5133817-CDS-H-paniculata_contig12093:4195..43901691480669.5133817-CDS-H-paniculata_contig12093:4195..4390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12093 4196..4390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12093.1325.1

>prot_H-paniculata_contig12093.1325.1 ID=prot_H-paniculata_contig12093.1325.1|Name=mRNA_H-paniculata_contig12093.1325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MPPSGDGQLDGDAAGAALLLRGFRSLSGPNIEAATEDAVNWTTTRLPPEA
EEGSENQQKCLNGSYTRGSWQLAPDPWRFANTSSTHAARQMGYSYVLPSC
KVVSLDSTGTQYK*
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mRNA from alignment at H-paniculata_contig12093:2638..4547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12093.1325.1 ID=mRNA_H-paniculata_contig12093.1325.1|Name=mRNA_H-paniculata_contig12093.1325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1910bp|location=Sequence derived from alignment at H-paniculata_contig12093:2638..4547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCGTTGTATACCGCGAGTAAAGCTTCATTACCTCGACCTTGGCATAC
CGTTACTCAATGCGTTATTACGCTACTGGCGATCGCTTCTGTGGCCGTCG
GAGCGACTTCGTTTCTGGCGACCGGAAACCATCGTGTGCAGGTATCGTTC
CCATGAAATATCATGTGTACAAAATAGAAAGCGATGCCATGGACGTTGAC
TGTGCGGTACAGTGCATTTTGGGCAAACGGTATATGGTGATTACAACAAC
GGCCATAAATTGCATCCCGCTAAACCGCCTGGTTCAACGAACGCACCACA
CGGACGGGTAAACGAACGGCGAGCGTCTCTAGCCTGTTCATTGTAGACTC
CCACCTCCCGACCCTGCTAGCTGATCCCATAATCAATATCACCATCGATC
CAGGAGACCACCGCGGCTATGCCACCGTCCGGCGATGGGCAACTTGACGG
CGATGCAGCTGGTGCTGCGTTGCTGTTACGTGGGTTTCGCAGCCTTTCTG
GGCCCAATATTGAAGCGGCTACTGAAGATGCCGTCAATTGGACTACGACA
CGACTCCCACCAGAGGTACGCGGGAGAGATGGAGGGCAGGGCAGGAAGGG
AGGGTGAGAGAGAATACTTGTGTTTACGCTTCAAAGGGAACAGAGCGAAT
ATGCCACACTAAGAAGAGGCATGATTTTACCCTTGGAGCCGGCTCTAGGG
CTTGTGTTTACGCGGAGCAGTTATCGTATACGAGTGAAAATTGATCCATG
TCTCATGGCCTACGGCGGAACGGCCCTTGTACATCTGGTAAGTTGTACCG
TGCAGAAAGGTACCTCCATGAAGCAAACGGCAACGCCGCGAATGACATCC
GAATCGCAAAACCGAATCCTCCCTGAGTGAACATACATAAATGATTGCCA
CCCCCTACGTTCTGTGGCAAGGCTCGAAACGAAATCCAGCATTCGAGCAG
TACCTTTTTGAATACGTCGCGATGCAACGAATCGCCGTTTTTGGTGTGGC
AAAGAGACGCCGAAATGGCACGTAAGGGCCGCACGGCATCATCAGAGAGA
CGTGACGCCCTCATGCCCCATGATCTTCACGCTAATGTGGTTCCACCGAC
TTGTTCGCAGGTTATCGCCGTGTACTTGCGGTGCACACGAGTAGTACTGC
GCCCCGTTTCTCTTGCATACAATATGGTCATCACACGCTTGTGCGCCAAG
GCAGATACGAAGTACGTTAATAGCAGTAGAGAGTATCAGCAAACCATGGT
AGCTAGCCCCAGTAGCAGGCCAGTGTCGAAAATCTAACGGGTCATCTACA
GTCTAGTTTTACACAACGTACAGCGGCGGTGCCCTTGTTATGCAGGCGGT
TGGGGGGGGGGGGCGATAACGATACCCACCTATTATCTCCTATTGGGAAT
GGACCATGCTACGCGGCACTCCAAACAGGTCAGTTCAGATGCATGCTGAG
AGAAGATTCTAATCCTCTGGGCTGATGAAAATAAAAACAGACATATCTCG
ATTCATGAGACCTCTCTCTCTCTCCCCGGCTGACCATGTTCGATTTCACT
TGGCGAAGGCGGAAGAAGGGAGCGAAAATCAGCAGAAATGTCTAAACGGG
AGCTACACCCGTGGGAGTTGGCAGTTGGCGCCGGACCCTTGGAGGTTTGC
AAATACTAGTTCGACACATGCAGCACGACAAATGGGCTATTCTTATGTGC
TGCCTTCTTGCAAAGTAGTGTCTTTAGATAGCACAGGAACGCAATATAAG
TAAGCTTAAATTAGTAGTAAGTAAAGGGAAAGGGAAAATATGCCCACATT
TGTTCTGATTCGTCAACCTTTTTTAAAGCAAATGTGATCGGTGAACGAGA
AAAAAGTCATTTGACCGGCGTCCCTTCGCAGTTAGCCACAACTTGTGGAG
CGTACGTGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig12093:2638..4547+

>mRNA_H-paniculata_contig12093.1325.1 ID=mRNA_H-paniculata_contig12093.1325.1|Name=mRNA_H-paniculata_contig12093.1325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig12093:2638..4547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCACCGTCCGGCGATGGGCAACTTGACGGCGATGCAGCTGGTGCTGC
GTTGCTGTTACGTGGGTTTCGCAGCCTTTCTGGGCCCAATATTGAAGCGG
CTACTGAAGATGCCGTCAATTGGACTACGACACGACTCCCACCAGAGATG
CCACCGTCCGGCGATGGGCAACTTGACGGCGATGCAGCTGGTGCTGCGTT
GCTGTTACGTGGGTTTCGCAGCCTTTCTGGGCCCAATATTGAAGCGGCTA
CTGAAGATGCCGTCAATTGGACTACGACACGACTCCCACCAGAGGCGGAA
GAAGGGAGCGAAAATCAGCAGAAATGTCTAAACGGGAGCTACACCCGTGG
GAGTTGGCAGTTGGCGCCGGACCCTTGGAGGTTTGCAAATACTAGTTCGA
CACATGCAGCACGACAAATGGGCTATTCTTATGTGCTGCCTTCTTGCAAA
GTAGTGTCTTTAGATAGCACAGGAACGCAATATAAGTAAGCGGAAGAAGG
GAGCGAAAATCAGCAGAAATGTCTAAACGGGAGCTACACCCGTGGGAGTT
GGCAGTTGGCGCCGGACCCTTGGAGGTTTGCAAATACTAGTTCGACACAT
GCAGCACGACAAATGGGCTATTCTTATGTGCTGCCTTCTTGCAAAGTAGT
GTCTTTAGATAGCACAGGAACGCAATATAAGTAA
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