mRNA_H-paniculata_contig1208.1317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 151 bits (382), Expect = 1.310e-41 Identity = 83/193 (43.01%), Postives = 119/193 (61.66%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNGTA--GGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ VG+LMW AT TRPDI +AVR +A++C P M H KAA IL Y RT+ +GIT+ G + M + +VD+DYA+ + G GGG V W SRTQ+ + T EAEYV +A+++ EVLF RQV + P+ I V EDN GAI++A+N + ++HIDV+H +++ E + + NV Sbjct: 99 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNV 291
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 149 bits (375), Expect = 6.320e-41 Identity = 79/193 (40.93%), Postives = 118/193 (61.14%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNGTA--GGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ +G+LMW AT TRPDI +AVR +A++C P H +A IL Y RT+DLGIT+ G + + + + D+DYA+ + G GGG + W SRTQ+ + T EAEYV+LA+++ EVLF RQV+ + PE I V+EDN GAI++A N S ++HIDV+H +++ + + +V Sbjct: 32 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHV 224
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 150 bits (379), Expect = 6.210e-40 Identity = 80/193 (41.45%), Postives = 116/193 (60.10%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNG--TAGGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ VG+LMW AT TRPDI +AVR +A++C P + H AA IL YA RT+ GI++ G + Y D+D+A+ + G T GGG V W SRTQ+ + T EAEYV L ++V E+LF RQ+ + P++ I V EDN GAI++A N S ++HIDV+H +++ E + V++V Sbjct: 240 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 432
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 149 bits (377), Expect = 8.100e-40 Identity = 82/193 (42.49%), Postives = 119/193 (61.66%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNGTA--GGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ VG+LMW AT TRPDI +AVR +A++C P M H KAA IL Y RT+ +GIT+ G + M + +VD+DYA+ + G GGG V W SRTQ+ + T EAEYV +A+++ EVLF RQV + P+ I V EDN GAI++A+N + ++HIDV+H +++ E + + +V Sbjct: 216 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV 408
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 149 bits (375), Expect = 9.380e-40 Identity = 82/193 (42.49%), Postives = 118/193 (61.14%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNGTA--GGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ VG+LMW AT TRPDI +AVR +A++C P M H KAA IL Y RT+ +GIT+ G + M + +VD+DYA+ + G GGG V W SRTQ+ + T EAEYV A+++ EVLF RQV + P+ I V EDN GAI++A+N + ++HIDV+H +++ E + + +V Sbjct: 191 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV 383
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 148 bits (373), Expect = 9.640e-40 Identity = 81/193 (41.97%), Postives = 118/193 (61.14%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNGTA--GGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ VG+LMW AT TRPDI +AVR +A++C P M H KAA IL Y RT+ +GIT+ G + M + +VD+DYA+ + G GGG V W SRTQ+ + T EAEYV +A+++ EVLF RQV + P+ I V EDN GAI++ +N + ++HIDV+H +++ E + + +V Sbjct: 154 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHV 346
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.150e-39 Identity = 81/193 (41.97%), Postives = 119/193 (61.66%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNGTA--GGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ VG+LMW AT TRPDI +AVR +A++C P M H KAA IL Y RT+ +GIT+ G + M + +VD+D A+ + G GGGGV W SRTQ+ + T E EYV +A+++ EVLF RQV + + D + I V EDN GAI++A+N + ++HIDV+H +++ E + + +V Sbjct: 152 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV 344
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 148 bits (373), Expect = 3.110e-39 Identity = 80/193 (41.45%), Postives = 117/193 (60.62%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNGTA--GGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ +G+LMW AT TRPDI +AVR +A++C P H +A IL Y RT+DLGIT+ G + + + +VD+DYA+ + G GGG + W SRTQ+ + T EAEYV+LA+++ EVLF RQV + PE I V EDN GAI++A N S ++HIDV+H +++ + + +V Sbjct: 216 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHV 408
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE) HSP 1 Score: 144 bits (362), Expect = 3.430e-39 Identity = 79/193 (40.93%), Postives = 114/193 (59.07%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNGTA--GGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ VG+LMW AT TRPDI +AVR +A++C P M H KAA IL Y RT+ +GI + G + M + +VD+DY + + G GGG V W SRTQ+ +A T E +YV +A ++ EVLF RQV + P+ I V EDN GAI++A+N + +HIDV+H +++ E + +V Sbjct: 56 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGIAFERGVVTGMSVQVFVDADYTSKATEHRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVAIANVLKEVLFLRQVWRFMLPDAGIPCIPVFEDNQGAIQIAHNPITNSNPKHIDVRHHFIRELVERKEISTTHV 248
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE) HSP 1 Score: 144 bits (364), Expect = 4.850e-39 Identity = 78/193 (40.41%), Postives = 115/193 (59.59%), Query Frame = 1 Query: 1 PYRKAVGTLMWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYA-GQNSQMKILAYVDSDYAACPEPFSVLRNG--TAGGGGVCWHSRTQEVIAAGTLEAEYVTLAEIVNEVLFRRQVQISIAPELDDNAITVMEDNDGAIKMANNKHSCRRTRHIDVKHRIVQDEAEAGNVCVVNV 570 P+R+ VG+LMW AT TRPDI +AVR +A++C P + H AA IL A RT+ GI++ G + + Y D+D+A+ + G T GGG V W SRTQ+ + T EAEYV L ++V E+LF RQ+ + P++ V EDN GAI++A N S ++HIDV+H +++ E + V++V Sbjct: 104 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 296 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1208.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1208.1317.1 >prot_H-paniculata_contig1208.1317.1 ID=prot_H-paniculata_contig1208.1317.1|Name=mRNA_H-paniculata_contig1208.1317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp MWTATMTRPDIEHAVRIIAKFCEKPGMAHKKAAEKILQYAFRTADLGITYback to top mRNA from alignment at H-paniculata_contig1208:14870..15442- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1208.1317.1 ID=mRNA_H-paniculata_contig1208.1317.1|Name=mRNA_H-paniculata_contig1208.1317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at H-paniculata_contig1208:14870..15442- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1208:14870..15442- >mRNA_H-paniculata_contig1208.1317.1 ID=mRNA_H-paniculata_contig1208.1317.1|Name=mRNA_H-paniculata_contig1208.1317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig1208:14870..15442- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |