mRNA_H-paniculata_contig12067.1310.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12067.1310.1
Unique NamemRNA_H-paniculata_contig12067.1310.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12067.1310.1 vs. uniprot
Match: D7G2T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T2_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.620e-19
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 QTKYGGRRAALEAREQCYAKLEKSEKEKWSLRGCLASEEKEVELLRSHLQRLKDASHKAAETAXXXXXXXXXXXXXXXXXXXXLHDKTELLEQK 282
            Q KYGGRRAAL+ARE+CYAK+E+ E+EKW+LR  L SEE+EVE+LR+HL+RLKDA+ KAA +A                    L DKTELLE K
Sbjct:  243 QAKYGGRRAALDAREECYAKIERVEQEKWALRDSLVSEEREVEVLRAHLKRLKDATDKAAVSAESDYRAACHELEAERGHRQRLQDKTELLEGK 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12067.1310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2T2_ECTSI1.620e-1956.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12067contigH-paniculata_contig12067:357..3861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size558
Cds size558
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12067.1310.1prot_H-paniculata_contig12067.1310.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12067 357..3861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.3506386-CDS-H-paniculata_contig12067:356..6531622928923.3506386-CDS-H-paniculata_contig12067:356..653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12067 357..653 -
1691480668.472299-CDS-H-paniculata_contig12067:356..6531691480668.472299-CDS-H-paniculata_contig12067:356..653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12067 357..653 -
1622928923.36215-CDS-H-paniculata_contig12067:1692..17671622928923.36215-CDS-H-paniculata_contig12067:1692..1767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12067 1693..1767 -
1691480668.488631-CDS-H-paniculata_contig12067:1692..17671691480668.488631-CDS-H-paniculata_contig12067:1692..1767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12067 1693..1767 -
1622928923.3783152-CDS-H-paniculata_contig12067:2966..30291622928923.3783152-CDS-H-paniculata_contig12067:2966..3029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12067 2967..3029 -
1691480668.4981022-CDS-H-paniculata_contig12067:2966..30291691480668.4981022-CDS-H-paniculata_contig12067:2966..3029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12067 2967..3029 -
1622928923.3886724-CDS-H-paniculata_contig12067:3738..38611622928923.3886724-CDS-H-paniculata_contig12067:3738..3861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12067 3739..3861 -
1691480668.5076509-CDS-H-paniculata_contig12067:3738..38611691480668.5076509-CDS-H-paniculata_contig12067:3738..3861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12067 3739..3861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12067.1310.1

>prot_H-paniculata_contig12067.1310.1 ID=prot_H-paniculata_contig12067.1310.1|Name=mRNA_H-paniculata_contig12067.1310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
QTKYGGRRAALEAREQCYAKLEKSEKEKWSLRGCLASEEKEVELLRSHLQ
RLKDASHKAAETAAAETQLISEQLQAERLERRRLHDKTELLEQKASLLQE
QIVGLSEQIERFQESENLLREDRERLARAEGQLRGDLASAKENSAEISSK
MAELSAKAEEEKGTGQREVQRLSTVLDEERVSRERE
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mRNA from alignment at H-paniculata_contig12067:357..3861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12067.1310.1 ID=mRNA_H-paniculata_contig12067.1310.1|Name=mRNA_H-paniculata_contig12067.1310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3505bp|location=Sequence derived from alignment at H-paniculata_contig12067:357..3861- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACGAAGTACGGGGGAAGGAGGGCAGCGCTAGAGGCTCGAGAGCAATG
CTACGCCAAACTGGAGAAATCGGAGAAGGAAAAGTGGAGCCTTAGGGGCT
GCTTGGCCTCGGAAGAGAAGGAGGTTAGACCTCGAACAGTCGAGGAAAAA
GAAACTCTCATGACGAAAAAGACTAGAAACAAAAAGAGAGCAAAACAAGG
CACCCACATTTGCTTTTACAATCGGATTTGTGAAGTTGGTATAGAATATC
CATGTAAAGAAGCACGAAAACGAAGAGGAAATTGCTGTGCGAAACTCAAC
AAGTTAGAGAAGACAAAAAGATGCCTTACGGGCCTGCTTGCTTGCTTAGC
TTGGGAGGAGAAGGATGTGATGAGCTATTATAAAAACTACGAAACACAAA
TAAAATAAATATAATGAATGACATGATACACTATACTAAATCCAAGGTGA
AAGACCACCAAACGACCAAAAGACATGACGCCATTTTGCACCTGAGATGC
CCTAACCAGATCACTGTGTCTCGGGTTGGTTTGTCCAGGGCTGGTTAGTA
AGGATTCTGCCGAGATATGCGTCATTATCCTCAACTGGTTGTTGGCAAAT
CTATATTTTGGCCGTTGCGAAATCCGGTTCCCAAGGGGCTAATGTCCTAC
GGGGAGGGTTAAATGTAGTTTTCCCCTCTGCTTCCTCGATCGTGAAACAA
GGACCAAGTCACGAGTATCTTGTGCTCTGTGCTCTGTGCTCTGTGCTCTG
TGCTCTGTGCTCTGTGCTCTATGCTCTATGCTCTATGCTCTGTGCCCTGT
GCCCTGTGCCCTGTGCTGTCTCCGTAATATAGGTGGAGCTTTTAAGGTCA
CACCTTCAGAGACTCAAAGACGCTTCACACAAAGCTGCAGAGACGGTGGG
TTAGCAGCCTGTGTTCTGCTGTGATTTGCCGAATTCCCTGCCGGATTAGC
TGTCCGATTCCGTGTTGATTTCACTGTCGGTCGGACTGATGTTAATCGTG
TGTCGGATTTTGGCTTTGAGTCCTTGTCGGATCGTCCTTAATCGGGCTGT
CGGATTGCCCTTGAGCGGCTGTCGGATTGGATTTGAGTGCTTACTGGGTT
GGCTCGAATTTGGCTGTCGGATTGCGCTTGAGCAGCTATCGGATTGCTTT
CGAGTATCTGTCGGATTGACCTTGAGTGGCTTCCTGCCCGATTGACTTAG
AGTGGCTGTCGGAATGACGTTTATTCAGGGCTTAAACTGGCCACGGAGTG
CTCACACGATGGGATAGAACGGGACGGATCGGAACGGCATTGTCGTTCTG
TCCTAACTTTTTTCGAGGACGGGACGGGGTCTAGTCCCATCCTGTTGTTT
TCAAGGGCGGGATCCCACCCCGTCCTGTTGTGTCGTTTCCTCGAAGGGCT
CGACGAGCTCCCTTCCCGTCCTGTTCAAATATTCTCTGATGCTCGTCTCG
TCCCGTGACCTTGTGTCAAGTGTTAAGTATCAAGCCCCGCTTTTAGGGGC
CATCGGGTGCTGTCATATCATACAATAATTGTCCAGATTATGTCGTGTCT
CACGGTAGGAGGTACTGTAGGTAGGGTGTCCCTTTGTAGATGGTAGGGTA
CCGTCTTGTAGAGAGTAGGATACACCCTTGTAGAGGGTAGGGTACGCCTT
TTATTTGCTACCAGGTACATATTCTCTGGAGTTGCAAGGAATAGCCCATG
ACTTGAAAGCAGCACGTATCGGGCACAAGACAAGATGGCACTTCTTGACC
TCGCTATTGCAAGGATTTTATTGATTAAAAAATATGGTATCTCATGATTT
CATGATACAGTTGATCTAATTGCCTATCTAGGTAACGATCTCATGAGTTC
AAGATCTCGTGATCTAATGGGCTAACGACCTACTACACTGAATTTTTGAT
TAATCTAATGTTCTTGTAATGAGGTGAGATGTATGATCAATAATTGAATA
CACAGAAGATCCACAGTAATGGTCTAAGGTAATTATCTTAGTATCTAATG
ATCTAATGATCTAATGATCTAATGATCTAATGATTTAATGATTTAATGAT
CTAATGATCTAATGATCTAATGATCTAATGTCATCTATCGGCAGGCCGCG
GCAGAGACGCAGCTAATCTCCGAACAACTCCAGGCGGAAAGGTTGGAGCG
GCGGAGGCTTCACGACAAGGTAAGATGCCTTCTCCATGTACATCCATACG
GTTGCGAAAACGCGTTCACTAGGGCTGTGCGTGGACGCCCATACATGCAT
AAATAGCATGATGCACCTCGACTGACGGCCAACCAATGTATCTATTTGAA
AAATTCGACTTGGTCACCTATGGGCCGCAGTGAGCGGCAGGTCCCAGACC
CCAGTCCAAATACACCGATGTTACGCTACAAACCGAAGTCCTTGTCACAC
CCCGTCATAATCCGCAAAAATCATGGAACTTGTGGATTTTGAAAAAGCTG
TCGTTTTATAACACGACGTTGGTGCAGGTGGACTGAGATCCAAGAACTCC
AGCAGTTCAATGTGAGCGAGCTCACTATGAGCCCAACAGGACCAAACCGA
AAGTTAGTGAATGGATATTTGCTGGCGCAAGCACCCCCATGTGTTGGTAT
ATGGATTGGCTTGGTCGAGCAAAGAAAAAATTGTTACGTTGAACGACTAT
CCCAGGAAAAAATAATAAAAATAATAATAATAATAATAATAATAATGACA
AGAATAATTCGATTCCTAGTTTTTTGGGAAAATTATTTGCAAGCATTCGT
ATTTGTCCGGCGGGTGAAACATTTATGGGCCACAATCAGCGATGTTGGTG
GGGAAAAGCGATTAGATGCCGGAGATTGCTCTGATAGGAGCGAAGCTCTA
TCCTCCCGAGGATTAGGTGGCCAAATCCGTGGCCGACGGTCTAAGAGCAA
TAACTACGGCATGCAAAACATGACAACGCCACCCCTGTTGGAGGAGTATT
TAGATCTAAATACGTATGTACAACACCGGCGAAAAGTGCATTTTGTGGTG
TAGACTTTTATATAGAGGAGTGTCTAATGGGCATCAAATGCATCAATTTG
TAGCCCTGTTGGGTTCGAATATTGCCCCTCGAGTGTATATAGCAGCCATT
TCGCTTTGGGCTAATTCATTAATCTGAGCGTTAGCGCGTAGCTCCACCTC
TTCCTCTCCCCTCCTCTCCCCTGACCACGTCTCGCGACCCAACCCCTCAT
GTATCCAGACGGAGTTGCTGGAGCAGAAGGCTAGCCTCCTTCAGGAGCAG
ATCGTAGGCCTGTCCGAACAGATCGAACGTTTCCAGGAATCCGAGAACCT
GCTCCGGGAGGACAGAGAACGCCTCGCGAGAGCGGAGGGTCAGTTGCGGG
GGGATTTGGCCTCGGCGAAAGAAAATTCCGCAGAAATTTCTTCGAAAATG
GCGGAACTCTCCGCGAAAGCCGAGGAGGAGAAGGGCACGGGCCAGCGAGA
GGTTCAGCGACTTTCCACAGTGCTGGATGAGGAGAGGGTTTCTAGAGAGC
GGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12067:357..3861-

>mRNA_H-paniculata_contig12067.1310.1 ID=mRNA_H-paniculata_contig12067.1310.1|Name=mRNA_H-paniculata_contig12067.1310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig12067:357..3861- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACGAAGTACGGGGGAAGGAGGGCAGCGCTAGAGGCTCGAGAGCAATG
CTACGCCAAACTGGAGAAATCGGAGAAGGAAAAGTGGAGCCTTAGGGGCT
GCTTGGCCTCGGAAGAGAAGGAGCAGACGAAGTACGGGGGAAGGAGGGCA
GCGCTAGAGGCTCGAGAGCAATGCTACGCCAAACTGGAGAAATCGGAGAA
GGAAAAGTGGAGCCTTAGGGGCTGCTTGGCCTCGGAAGAGAAGGAGGTGG
AGCTTTTAAGGTCACACCTTCAGAGACTCAAAGACGCTTCACACAAAGCT
GCAGAGACGGTGGAGCTTTTAAGGTCACACCTTCAGAGACTCAAAGACGC
TTCACACAAAGCTGCAGAGACGGCCGCGGCAGAGACGCAGCTAATCTCCG
AACAACTCCAGGCGGAAAGGTTGGAGCGGCGGAGGCTTCACGACAAGGCC
GCGGCAGAGACGCAGCTAATCTCCGAACAACTCCAGGCGGAAAGGTTGGA
GCGGCGGAGGCTTCACGACAAGACGGAGTTGCTGGAGCAGAAGGCTAGCC
TCCTTCAGGAGCAGATCGTAGGCCTGTCCGAACAGATCGAACGTTTCCAG
GAATCCGAGAACCTGCTCCGGGAGGACAGAGAACGCCTCGCGAGAGCGGA
GGGTCAGTTGCGGGGGGATTTGGCCTCGGCGAAAGAAAATTCCGCAGAAA
TTTCTTCGAAAATGGCGGAACTCTCCGCGAAAGCCGAGGAGGAGAAGGGC
ACGGGCCAGCGAGAGGTTCAGCGACTTTCCACAGTGCTGGATGAGGAGAG
GGTTTCTAGAGAGCGGGAGACGGAGTTGCTGGAGCAGAAGGCTAGCCTCC
TTCAGGAGCAGATCGTAGGCCTGTCCGAACAGATCGAACGTTTCCAGGAA
TCCGAGAACCTGCTCCGGGAGGACAGAGAACGCCTCGCGAGAGCGGAGGG
TCAGTTGCGGGGGGATTTGGCCTCGGCGAAAGAAAATTCCGCAGAAATTT
CTTCGAAAATGGCGGAACTCTCCGCGAAAGCCGAGGAGGAGAAGGGCACG
GGCCAGCGAGAGGTTCAGCGACTTTCCACAGTGCTGGATGAGGAGAGGGT
TTCTAGAGAGCGGGAG
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