mRNA_H-paniculata_contig12056.1307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12056.1307.1
Unique NamemRNA_H-paniculata_contig12056.1307.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12056.1307.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 5.670e-78
Identity = 149/303 (49.17%), Postives = 194/303 (64.03%), Query Frame = 3 
Query:  231 TPENACCMAPYAFFDCTGDGYSPGPGKLYTCVSLDSLTGCMECMDSKRASRSSCTTCCAQPSEAECKNIENRDWEFYLSTVFFVCLCCCFSALCGFTEARRKRKGMSFAAAWSIPQAIPVLRTWPRRSVSMSDAIPELERDAEGWAALSDEETDQKRYPVAGLVDDTGMAFGFKTSMPQSLLGSVSASLRRQNPSATVAPAPPPEPELTVWISRDG------APTSYHLNSSDVQVDVSSEEGRDGTSASSTGQEGANHDRNLRRGRGRGNAVANNLQEPLIFGDGDGT-VGRGIAVGGTSGG 1118
            T E  CC+ P+++FDCTG G+   PGKLYTC+ +  ++ CM C+ +   S  SC TCC+  +  +C  +++ +W+FY ST+FF+CLCCCF+ALCG TE RRK+KG+SFA AWS+PQA+P+LRTWPRRS S SD           WAALSD+E D KRYPVAGLVDD+GMAFGF T++PQ+LL SV+ SLR+   + + +P  P EPELTVWISRD       AP    +        V+  E    +  SS G  GA      R+ R     V N+L+EPL+  DG GT  GRG   GG +GG
Sbjct:   24 TAEENCCITPFSYFDCTGTGHLASPGKLYTCIDVSEVSSCMSCLRNADYSDVSCDTCCSIEN-LDCTKVDS-EWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSDMSQAGGEVGTQWAALSDDEEDLKRYPVAGLVDDSGMAFGFVTTLPQTLLSSVATSLRQ---AGSPSPPSPQEPELTVWISRDNEGASASAPAHRGIGGGSGASAVTGVEANS-SEESSRGSSGATRAAGGRQQRAV--VVGNDLEEPLML-DGVGTGPGRG---GGAAGG 314
[Close]
BLAST of mRNA_H-paniculata_contig12056.1307.1 vs. uniprot
Match: A0A6H5L5L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.990e-9
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = 3 
Query:  246 CCMAPYAFFDCTGDGYSPGPGKLYTCVSLDS--LTGCMECMDSKRASRSSCTTCCAQPSEAECKNIENRDWEFYLSTVFFVCLCCCFSALCGFTEARRKRKGMSFAAAWSIPQAIPVLRTWPRRSVSMSDAI 635
            CC  P A  +C   G     G+ Y C+ ++S     C+ C+ S R+S + C  CC  P+ AEC ++E   W   L+T+    +    S +    E RRKRKG+S A AWSIPQ +PVLR        +SDA+
Sbjct:   67 CCSGPDAEIECVESGVDY-LGERYYCMHVESPQTRACVSCIPS-RSSSTKCAYCCGTPN-AEC-DLE-WSWGAVLATLSVSAVFATCSGILALAEKRRKRKGISLARAWSIPQGMPVLRA---TVTDLSDAV 190
[Close]
BLAST of mRNA_H-paniculata_contig12056.1307.1 vs. uniprot
Match: D7FJE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE0_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.750e-6
Identity = 63/215 (29.30%), Postives = 89/215 (41.40%), Query Frame = 3 
Query:  324 VSLDSLTGCMECMDSKRASRSSCTTCCAQPSEAECKNIENRDWEFYLSTVFFVCLCCCFSALCGFTEARRKRKGMSFAAAWSIPQAIPVLRT---------------WPRRSVSMSDA-----------IPELERDAEGWAALSDEETDQKRYPVAGLVDD---TGMAFGFKTSMPQS---LLGSVSASLRRQNPSATVAPAPPPEPELTVWISR 872
            V       C+ C+ S R+S + C  CC  P+ AEC ++E   W   L+T+    +    S +    E RRKRKG+S A AWSIPQ +PVLR                W    ++ +D            + E+  D+   A +   ++D    PVA L +D   T MAF      P S     GS S +    +      P    E E T  +SR
Sbjct:    3 VESPQTRACVSCIPS-RSSSTKCAYCCGTPN-AEC-DLE-WSWGAVLATLSVSAVFATCSGILALAEKRRKRKGISLARAWSIPQGMPVLRATVTDLSDAVRGRASIWSAEGLNGADVGDDDLLEHVGLLEEIPNDSIYGALVQQRDSD---IPVAKLAEDNWVTAMAFAGGQPNPDSDPVTYGSTSTTTASTSRREGAGPEGQEEEEHTWSVSR 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12056.1307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAQ4_9PHAE5.670e-7849.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L5L4_9PHAE2.990e-937.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJE0_ECTSI2.750e-629.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12056contigH-paniculata_contig12056:1740..7650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size2306
Cds size1104
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12056.1307.1prot_H-paniculata_contig12056.1307.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12056 1817..6525 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928922.786208-UTR-H-paniculata_contig12056:1739..18161622928922.786208-UTR-H-paniculata_contig12056:1739..1816Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12056 1740..1816 +
1691480668.217987-UTR-H-paniculata_contig12056:1739..18161691480668.217987-UTR-H-paniculata_contig12056:1739..1816Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12056 1740..1816 +
1622928922.87885-UTR-H-paniculata_contig12056:6525..76501622928922.87885-UTR-H-paniculata_contig12056:6525..7650Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12056 6526..7650 +
1691480668.2692454-UTR-H-paniculata_contig12056:6525..76501691480668.2692454-UTR-H-paniculata_contig12056:6525..7650Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12056 6526..7650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928922.803112-CDS-H-paniculata_contig12056:1816..20221622928922.803112-CDS-H-paniculata_contig12056:1816..2022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12056 1817..2022 +
1691480668.2347157-CDS-H-paniculata_contig12056:1816..20221691480668.2347157-CDS-H-paniculata_contig12056:1816..2022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12056 1817..2022 +
1622928922.820063-CDS-H-paniculata_contig12056:5058..51541622928922.820063-CDS-H-paniculata_contig12056:5058..5154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12056 5059..5154 +
1691480668.24491-CDS-H-paniculata_contig12056:5058..51541691480668.24491-CDS-H-paniculata_contig12056:5058..5154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12056 5059..5154 +
1622928922.850146-CDS-H-paniculata_contig12056:5723..65251622928922.850146-CDS-H-paniculata_contig12056:5723..6525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12056 5724..6525 +
1691480668.2542617-CDS-H-paniculata_contig12056:5723..65251691480668.2542617-CDS-H-paniculata_contig12056:5723..6525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12056 5724..6525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12056.1307.1

>prot_H-paniculata_contig12056.1307.1 ID=prot_H-paniculata_contig12056.1307.1|Name=mRNA_H-paniculata_contig12056.1307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=368bp
MICKLAPVVDYPPRLKVPWLVFAVVALLHCRDNVQAQTSYLSSSQSSSTS
DTPENACCMAPYAFFDCTGDGYSPGPGKLYTCVSLDSLTGCMECMDSKRA
SRSSCTTCCAQPSEAECKNIENRDWEFYLSTVFFVCLCCCFSALCGFTEA
RRKRKGMSFAAAWSIPQAIPVLRTWPRRSVSMSDAIPELERDAEGWAALS
DEETDQKRYPVAGLVDDTGMAFGFKTSMPQSLLGSVSASLRRQNPSATVA
PAPPPEPELTVWISRDGAPTSYHLNSSDVQVDVSSEEGRDGTSASSTGQE
GANHDRNLRRGRGRGNAVANNLQEPLIFGDGDGTVGRGIAVGGTSGGGAG
VDEEGKCSDGIGARGER*
back to top

mRNA from alignment at H-paniculata_contig12056:1740..7650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12056.1307.1 ID=mRNA_H-paniculata_contig12056.1307.1|Name=mRNA_H-paniculata_contig12056.1307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5911bp|location=Sequence derived from alignment at H-paniculata_contig12056:1740..7650+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCTGTAATAATTGGAAAGGTTATATAAAAGAAGTTGGGGCCGTCTCC
TATCGCAGCTGCTTCACGATCCCTGAAATGATTTGCAAGCTTGCACCTGT
GGTGGATTATCCTCCGAGGTTGAAGGTCCCCTGGCTGGTTTTCGCGGTGG
TAGCTCTGCTGCACTGCCGAGACAATGTGCAGGCACAGACATCATATTTG
TCGTCATCACAGAGCAGCAGTACTTCAGACACTCCCGAAAACGCTTGCTG
CATGGCCCCTTACGCGTTCTTCGACTGCACAGGGTAAGGGTGGTAGATGA
AGAGAGCGAGAGAGGAGGAGGGAGAGGGAGGGCATTCCATGTGAAGTTCG
ACTCACGGGTGTTGTATAATAGATATGTACTGTATGCTCATTCCGGTCAC
GCTTATTGTATTTCCGCCGCACTTGAGTATATTCAAGTCCGTAGGCAGAA
GACTGACTGCATTCTTTTCAGCAGTAGTTAAGCCGTACATGTCCTCTGGT
AGGGGGTCAGCGACATGGTGGTTGTACAAGACTGCCCAGGGTCGTTTTGT
ATCGCACACGCCTCCTGTTGGGACTTGGCTTTCACAGCAGTTGAATAAAA
TGAGGTTGATGCGGGGCAAAAGCATATTAGGTGAATCTCTGAAGTGTCGT
GATGGTGGATATGGACTTCTTAATTGAGAGTTTGTGGTATAACCTCGGGA
TAATGGCGCGACGAGACCAAAAAAAAAGGAAACTTGGGCTGTGTATCGGT
GCCAGTACATGTGCGATCTCTCTCTCTATATATATTATGGTGAGATCTAT
CCAATCGATATTCTTATCAAAAATGAAATATTGTTCTCAAATGTCTTAAC
GACCGAGGGTTGAAAAAAAAAGAGCTCAGGGCTGCCCCTGCATCTCTCAA
TCATTATTTAGACTCATATTCAATTGTAAACGCATTAACAACGTCGAACA
GCACGCCCAGAAAGGGTACGGCGCCGTAGGTGACGCAAGGCATCACTTGG
CATATAATGAACACAATCTCCTGCCCATGACTGGTTTGGTACGCCACCTG
GTCTACCTCCGAACTTGAGGTGTGTCACCGTCTACTCGCGGTGGACAGGG
CCCTAACCCACCCTCGCCCACCCAAACAGAGTCGGCCATTGCAACTGTTT
TTACGATTGCTCTTATCCCGAAAGCGCACTCTGTTTCGATCTCCTTGGTC
GCCTATAAACCCATGTTTTTGCCGATTTCCACCGTCTGAGCGGCCGCTTT
TCTCGGTTTTGATTTAAATTTTTTTCATTCGTTTCGACCGCTCTCCCGCT
CGGGGCGTGATTGCTTCCAGCTATTCTCACATGCCTTTCCCTGTGAGGGA
CCAACGGTGCGGGCAATAATCTCTTGCGTTTTTCTCTGCCCGCGTCGGCG
TGTCCGTGCGGGCTCCGCGCCTGCAGTTGTTTTTTTTGCCGTTTAATGAC
GGAGCCGTTTTGTGGAGATTTTTTTAATTCTCGATTTCGACCACTCTCGC
GCAGAGCCTGCAGTGAGGACGGACTGCGCTGCACTGCGGTACTGACTGCT
TGCTCCGCTGTATCGTCTGATACCTTCTGACTCTGTGTGTTGCTTTCATC
ATAAACTATCTATCGTAACCGACTCTTCTCAACTGTTGTGTACAAGTGTG
CTTGAAATGGATATCTTTCACTCGTGCGGTGTGTTCATGGTCTCATACTG
TCATGAACTACGTGTGTGTGACATGATATTATTTCGTAAGTTTGAACACT
ATCACATTCTGCAGCGTCGGTGGCAGTATGCTCTGCTCCTGTTTCTGAAT
AGGTTGTTATAAGTTGTTGTCAGATAATCTTGATTGCCGCTCATGATCAT
TTTGCTGACTGTGATCTATCTGGACCAATCTGACATGGGGTAGTAAATAG
TTATCCACAGTGAGCGAGTAGAGCAGGATCTTCGCTGCCCATTTCTAGAT
GGATTATTCGTTGTTGTCGGTCTCTGCAACAACAGAGAGTACCGACACAC
TTTTCCACTATCGCCTTCCTTACTAGATGGAAGATCGTTGTTCTTTTTTC
TTTGTCATCTCTCGGTGACATCTCCACTTTGAGTGCTTACACGAGCTTCA
AACCAGCCAAGATGCAGTCGCTTGCGTTCTTCGCTGTGGCGCATAGGTGG
CCACGACGACTCAAGGTTTTTCTCATCGCGGTGCCATGTCACTGCGCTAT
CGTCCTATTGTGTCAAACCATCCATCTCACCTGTGCCGTTTTTTCCTTGG
AAATTTATCAGAATTCTATCAAAATAATATCTCTGGTTCATCTTGACCGT
TGTGGCTCACCATATTTCTCGATTCTCAATCCATCACCAAACCAACACCT
CATACTATGATTGATACAAATTGTATATCGAGCGAGACGATACATTTTCA
TCTGCTATCAAAACCACGAATCGGTGTTTTCGCCTCGCATGCTGTTGTCA
TGATCAGGTGTATGTGCATATGCTGTAGTCATCATCAAATACCAGCAAAC
ACAAAACTTACATTTTTTTCCGCCTCCAGCAGCGCCCCCAGCGGTGTCCC
TTCACCAGTCTGGGGCGACCATTTCGGTCCGCGCCAAAGGACCCGCCTGG
TGCTTCACGTGATTGGCTCGGTTCGCACGTACCAATATATTGCCGATGTA
TTGGTGTATCATTTCGAACATCCGATACACAGCCCTAATTAGAACAGTAT
TGCTGACGTTGATTACATTGATGAATAGTACAGATTCTTGGGATTCCAAA
GGCCACGCTTCAAATTTCTGTCCTGTCTCCATTGCCGAACAAAGAGCAAC
CCCAGAGGGTTTAATAGGGTATGACGTCGACTAAATGTCTGCTAATAATT
CAGTATTCAACCGGTCGGCCATCACGGTTGCATATACAACCGCATTGCTG
TAGAACCCATTTAACTATATTCTGACTGATGGTTTCAGCCCAGGTCAAAA
CAAGCTATTTTTCTCTGCCCGTGTAAGCCTAATCCCAAATGCGCACACAG
ACCAGTTTGGGAACATTGTGTTGCTTGTAGCGCGACATCGTTACAGACTA
CAAAATAATGATGAGGATTTCCATTTAGTGCCCCTGTTTTAGGTCCACTG
GTGTCATCCACATAACAAGTCACATGACATTGTGCTACGTCAGCATTCAG
GGCTTGTCACGCGGTACAGAACTCATACATTTAACGCCCAGGAGTCGCTA
CCTTCGAATACATTAGAATATTATGATCATAATCTGACCATTTCGCCTCT
CCATTTTCATCGTGATACAGTTCTGTCCGCGTTTCCGTCTTCGTGGGTGT
GTCCCGTCTGCGTGCCCAGGGACGGCTATTCTCCTGGGCCTGGAAAGTTG
TACACCTGCGTCTCGTTGGACAGCCTGACGGGGTGCATGGAGTGTATGGA
TTCCAAACGCGCAAGGTAATGGACTTGATTCGCCATGTGGCCTCTTACCG
AAGTCCCTGATGACAGTTGCCGTGATGACTTCGTCCTCAAATTGTTGCTT
TATCTCCAACGTATTCAGGCACATCCGTTGACCGACCTCTTCCGTGTTTC
TTACAAGCACGGGCCGCATTTGTATGTATCAGTCACTGTCGTTGAGTGCG
GGGAATTGGAAGTGGCTTGGTTTGCTGCACGTCACGACCGCAACAGTTGT
CCCTTCATGCAGATTCCTTGCCACCAAGAATACTGTGTTACTTACTGTGT
GGTACGCAGAGGTAGTTCGGCACCTAATCCAATCCAACCCAGCTGCAAGT
TGTAATGTGGTGGTGCTGCTTGTACTGAGCGCTGTGCCTGCCTTGTTGCG
TTGGGCGGCGTATCGCTTGTGTCGCGCGGCATGTGTGCAGATTTGCGTTT
GTGGCAAAGTCCCCCCGCCAGTTGCTCATCTAAATCTGATGGCTGAATGT
CCCTTCTCCCACCCATGGCACACCCATCGCTTGCGCTTTGGTTTTGTCGA
CTATTCTCCGTGTGTTTCGTAACTACGTACCTAGCCGGAGTTCGTGTACG
ACCTGTTGCGCACAGCCATCAGAGGCGGAGTGCAAGAATATCGAGAACAG
GGACTGGGAATTCTACCTTTCTACGGTGTTTTTCGTGTGTCTATGTTGCT
GTTTCTCAGCCTTATGTGGTTTCACCGAAGCGCGTCGGAAAAGGAAAGGA
ATGTCGTTCGCAGCAGCTTGGTCAATCCCGCAAGCCATACCTGTCCTTCG
TACATGGCCACGGCGGTCTGTGTCGATGTCGGATGCCATACCTGAGTTGG
AACGGGATGCAGAGGGATGGGCAGCTCTCTCAGACGAGGAAACTGATCAG
AAGCGATATCCAGTGGCGGGCCTTGTAGACGACACGGGCATGGCGTTTGG
CTTCAAGACATCTATGCCGCAGTCGCTTTTGGGCAGCGTTTCCGCATCTT
TGAGGAGGCAAAACCCTTCGGCGACCGTGGCGCCGGCGCCCCCGCCAGAG
CCTGAACTCACGGTTTGGATTTCCAGAGATGGTGCTCCCACAAGCTATCA
TCTTAATTCATCAGACGTGCAGGTGGACGTGAGCAGCGAGGAGGGGAGAG
ACGGAACAAGTGCGAGTAGCACAGGACAAGAGGGTGCTAACCATGATAGA
AATTTACGAAGAGGGCGAGGGCGGGGTAATGCGGTGGCAAATAACCTACA
AGAGCCCTTGATATTCGGCGATGGGGATGGTACAGTTGGGCGGGGGATCG
CTGTTGGCGGTACTAGCGGCGGGGGAGCTGGCGTCGATGAGGAGGGGAAA
TGTAGCGATGGAATAGGGGCTAGAGGGGAGCGATGACGGCCATGCTGAAT
GTATGTGTGACAAGCACCCGGTGCTTTTCTAGGTTCAGTGAAATTTGTTG
AGCTACACGATAGGTGTGTGCAGTGGCTAGTCGGATGTACACGTTTTTTT
GTATGCGTACTGGGTCTGCCGGAAATGATCGCGAGGGGCTTGAAGAATTT
GATGCTTAGGGTCAATTGCGTGTATTTTTGTTTGGTCTGCCTGTCTGGAG
TTAGTTTTTAGTCACATGGCAAATAAACTACTGCAGTACGAGCTGGGGAT
GGAAGTAAAAACTTGAGGGGGTGGTGACACATATGCTGAAACATGGTGTG
TGACAGGCACTCGGTATCGAGATTATTGGTCTTTGGGGGGTTTGGTGCAT
CTGTTTGGATACACGACACGTGCGTGCACAGGCTGCGCGCGTGTACCCGA
TTTTTGTGTTTGTTCTGGGTCGTCCATAAAATGTAGTGAAGGGGTTGTAC
CCTAGTGTGTGGCGGTTTTTGTCCGTCTTGCTCATTTTGCGTTGAAAATT
TGCGAATGTTGCTGGTAAAATTTTGTGAAGGTCTATAGCGTTGTGTGGCC
AATGCGACTCTGTTGTATGTATACTCTGCGCTGGAATATTTATCTGTATT
TCTTAGTTCGCAGAAAAATCGTGTCTTCCGTTTTGTAGTGGCATGATTAT
TTTCGGTCTTGTTTCATCTTACTTTTGACCTGTGCATGGCACAGGGGTAT
GTTCTGTTGGACACGTAATGTTACATTTCTGTGATGTATGGTGTTGGTGC
GATACCGATTTTTCAGCGGGTGTAATTGAATGGTTGAAATCAGTATCCGA
CAAGCGAAGGATGCGGTCCTCGGTGAAATGCTCGCTCCCGTTTTGTGATA
GCTGTCAACGCAGGATTATAGTCGGCAAACTCTATGGTGGCCAACAGGAA
CGCACCAGCCGATGTAAGAATCGTTGTTTTTGTTTGAATTCATTTGTTAT
GGACATGTCGCCGAAGGGAAAAAAGTGAAAAGGTGTATGTATTATCATTC
CTCGTCTCACTCGAAGGTCCTCAATCCGATGCTTTAATCGTGATGGCATC
ACAACGCCGTGATGTTAGGGAGTGTCTTCAAAAGAAAAAAATGAAGTGAT
ATTGAATTTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12056:1740..7650+

>mRNA_H-paniculata_contig12056.1307.1 ID=mRNA_H-paniculata_contig12056.1307.1|Name=mRNA_H-paniculata_contig12056.1307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2208bp|location=Sequence derived from alignment at H-paniculata_contig12056:1740..7650+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTGCAAGCTTGCACCTGTGGTGGATTATCCTCCGAGGTTGAAGGT
CCCCTGGCTGGTTTTCGCGGTGGTAGCTCTGCTGCACTGCCGAGACAATG
TGCAGGCACAGACATCATATTTGTCGTCATCACAGAGCAGCAGTACTTCA
GACACTCCCGAAAACGCTTGCTGCATGGCCCCTTACGCGTTCTTCGACTG
CACAGGATGATTTGCAAGCTTGCACCTGTGGTGGATTATCCTCCGAGGTT
GAAGGTCCCCTGGCTGGTTTTCGCGGTGGTAGCTCTGCTGCACTGCCGAG
ACAATGTGCAGGCACAGACATCATATTTGTCGTCATCACAGAGCAGCAGT
ACTTCAGACACTCCCGAAAACGCTTGCTGCATGGCCCCTTACGCGTTCTT
CGACTGCACAGGGGACGGCTATTCTCCTGGGCCTGGAAAGTTGTACACCT
GCGTCTCGTTGGACAGCCTGACGGGGTGCATGGAGTGTATGGATTCCAAA
CGCGCAAGGGACGGCTATTCTCCTGGGCCTGGAAAGTTGTACACCTGCGT
CTCGTTGGACAGCCTGACGGGGTGCATGGAGTGTATGGATTCCAAACGCG
CAAGCCGGAGTTCGTGTACGACCTGTTGCGCACAGCCATCAGAGGCGGAG
TGCAAGAATATCGAGAACAGGGACTGGGAATTCTACCTTTCTACGGTGTT
TTTCGTGTGTCTATGTTGCTGTTTCTCAGCCTTATGTGGTTTCACCGAAG
CGCGTCGGAAAAGGAAAGGAATGTCGTTCGCAGCAGCTTGGTCAATCCCG
CAAGCCATACCTGTCCTTCGTACATGGCCACGGCGGTCTGTGTCGATGTC
GGATGCCATACCTGAGTTGGAACGGGATGCAGAGGGATGGGCAGCTCTCT
CAGACGAGGAAACTGATCAGAAGCGATATCCAGTGGCGGGCCTTGTAGAC
GACACGGGCATGGCGTTTGGCTTCAAGACATCTATGCCGCAGTCGCTTTT
GGGCAGCGTTTCCGCATCTTTGAGGAGGCAAAACCCTTCGGCGACCGTGG
CGCCGGCGCCCCCGCCAGAGCCTGAACTCACGGTTTGGATTTCCAGAGAT
GGTGCTCCCACAAGCTATCATCTTAATTCATCAGACGTGCAGGTGGACGT
GAGCAGCGAGGAGGGGAGAGACGGAACAAGTGCGAGTAGCACAGGACAAG
AGGGTGCTAACCATGATAGAAATTTACGAAGAGGGCGAGGGCGGGGTAAT
GCGGTGGCAAATAACCTACAAGAGCCCTTGATATTCGGCGATGGGGATGG
TACAGTTGGGCGGGGGATCGCTGTTGGCGGTACTAGCGGCGGGGGAGCTG
GCGTCGATGAGGAGGGGAAATGTAGCGATGGAATAGGGGCTAGAGGGGAG
CGATGACCGGAGTTCGTGTACGACCTGTTGCGCACAGCCATCAGAGGCGG
AGTGCAAGAATATCGAGAACAGGGACTGGGAATTCTACCTTTCTACGGTG
TTTTTCGTGTGTCTATGTTGCTGTTTCTCAGCCTTATGTGGTTTCACCGA
AGCGCGTCGGAAAAGGAAAGGAATGTCGTTCGCAGCAGCTTGGTCAATCC
CGCAAGCCATACCTGTCCTTCGTACATGGCCACGGCGGTCTGTGTCGATG
TCGGATGCCATACCTGAGTTGGAACGGGATGCAGAGGGATGGGCAGCTCT
CTCAGACGAGGAAACTGATCAGAAGCGATATCCAGTGGCGGGCCTTGTAG
ACGACACGGGCATGGCGTTTGGCTTCAAGACATCTATGCCGCAGTCGCTT
TTGGGCAGCGTTTCCGCATCTTTGAGGAGGCAAAACCCTTCGGCGACCGT
GGCGCCGGCGCCCCCGCCAGAGCCTGAACTCACGGTTTGGATTTCCAGAG
ATGGTGCTCCCACAAGCTATCATCTTAATTCATCAGACGTGCAGGTGGAC
GTGAGCAGCGAGGAGGGGAGAGACGGAACAAGTGCGAGTAGCACAGGACA
AGAGGGTGCTAACCATGATAGAAATTTACGAAGAGGGCGAGGGCGGGGTA
ATGCGGTGGCAAATAACCTACAAGAGCCCTTGATATTCGGCGATGGGGAT
GGTACAGTTGGGCGGGGGATCGCTGTTGGCGGTACTAGCGGCGGGGGAGC
TGGCGTCGATGAGGAGGGGAAATGTAGCGATGGAATAGGGGCTAGAGGGG
AGCGATGA
back to top