mRNA_H-paniculata_contig12007.1287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12007.1287.1
Unique NamemRNA_H-paniculata_contig12007.1287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12007.1287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12007contigH-paniculata_contig12007:2533..3327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size714
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12007.1287.1prot_H-paniculata_contig12007.1287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12007 2566..3033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.3198886-UTR-H-paniculata_contig12007:2532..25651622928917.3198886-UTR-H-paniculata_contig12007:2532..2565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12007 2533..2565 +
1691480667.0352418-UTR-H-paniculata_contig12007:2532..25651691480667.0352418-UTR-H-paniculata_contig12007:2532..2565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12007 2533..2565 +
1622928917.495279-UTR-H-paniculata_contig12007:3033..33271622928917.495279-UTR-H-paniculata_contig12007:3033..3327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12007 3034..3327 +
1691480667.0704088-UTR-H-paniculata_contig12007:3033..33271691480667.0704088-UTR-H-paniculata_contig12007:3033..3327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12007 3034..3327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.4727457-CDS-H-paniculata_contig12007:2565..29131622928917.4727457-CDS-H-paniculata_contig12007:2565..2913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12007 2566..2913 +
1691480667.04481-CDS-H-paniculata_contig12007:2565..29131691480667.04481-CDS-H-paniculata_contig12007:2565..2913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12007 2566..2913 +
1622928917.4838982-CDS-H-paniculata_contig12007:2994..30331622928917.4838982-CDS-H-paniculata_contig12007:2994..3033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12007 2995..3033 +
1691480667.0568285-CDS-H-paniculata_contig12007:2994..30331691480667.0568285-CDS-H-paniculata_contig12007:2994..3033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12007 2995..3033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12007.1287.1

>prot_H-paniculata_contig12007.1287.1 ID=prot_H-paniculata_contig12007.1287.1|Name=mRNA_H-paniculata_contig12007.1287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MDRDIWSVECFGSFLLGLACIKHTRIKLSFIMHSLITHSFITHSLITQTL
IMHSLAEHLLIEHSFVEHQLIKHSSSTRESSIRSSRTLLSSIRVSRIRLL
SIRVSRIPSSRTRSSSLKSPSFRIASLL*
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mRNA from alignment at H-paniculata_contig12007:2533..3327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12007.1287.1 ID=mRNA_H-paniculata_contig12007.1287.1|Name=mRNA_H-paniculata_contig12007.1287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig12007:2533..3327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGGGAACCCCACTTGTATGGTATAATTCGCAATGGACCGTGATATTTG
GTCTGTGGAATGTTTTGGGTCTTTCTTGCTGGGCCTAGCTTGTATAAAGC
ATACGCGTATCAAGCTTTCGTTCATCATGCACTCGCTCATCACGCACTCG
TTCATCACGCACTCGCTCATCACGCAAACGCTCATCATGCATTCGCTTGC
CGAGCATCTGCTTATCGAACATTCGTTTGTTGAGCATCAGCTCATCAAAC
ATTCATCAAGCACTCGTGAATCAAGTATTCGCTCATCACGCACTCTCTTA
TCAAGTATTCGCGTATCACGCATTCGCTTATTAAGCATTCGTGTATCACG
AATTCCATCGTCACGCACTCGCTCATCAAGCGTTCGCTTATCCAGCATTC
GCCAGACCGCATGAAATATTCCGCGAGGACGCCGTTAAATGCTCGTCGAG
CACATGTTCCAGCTAAAAAGCCCTTCTTTTCGCATTGCCTCTCTCCTATA
AGACACTGCACATTATGGAGGAGCGCTTACTCAAACGTATGCGCCAGCAG
AAACACCTCGCACAACTTAATCTTCAACGCGATATATGCTCGTACGTACC
ACTATGAAGAAGTGATAATGGATATGATCGAAATATCAATATATAAACTA
ATGTAATGACTCAACAAGGAACTAACAACGCCTCAAACAAACTGCAAGCT
CACAACCTACAACACAACAGGTGAGACCAGAAGAAACCAGAACAGGAAAA
ATGCGTGTCAAGTATCCGAGGTTATAATGACCGACTGAAAACAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig12007:2533..3327+

>mRNA_H-paniculata_contig12007.1287.1 ID=mRNA_H-paniculata_contig12007.1287.1|Name=mRNA_H-paniculata_contig12007.1287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig12007:2533..3327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCGTGATATTTGGTCTGTGGAATGTTTTGGGTCTTTCTTGCTGGG
CCTAGCTTGTATAAAGCATACGCGTATCAAGCTTTCGTTCATCATGCACT
CGCTCATCACGCACTCGTTCATCACGCACTCGCTCATCACGCAAACGCTC
ATCATGCATTCGCTTGCCGAGCATCTGCTTATCGAACATTCGTTTGTTGA
GCATCAGCTCATCAAACATTCATCAAGCACTCGTGAATCAAGTATTCGCT
CATCACGCACTCTCTTATCAAGTATTCGCGTATCACGCATTCGCTTATTA
AGCATTCGTGTATCACGAATTCCATCGTCACGCACTCGCTCATCAAGCAT
GGACCGTGATATTTGGTCTGTGGAATGTTTTGGGTCTTTCTTGCTGGGCC
TAGCTTGTATAAAGCATACGCGTATCAAGCTTTCGTTCATCATGCACTCG
CTCATCACGCACTCGTTCATCACGCACTCGCTCATCACGCAAACGCTCAT
CATGCATTCGCTTGCCGAGCATCTGCTTATCGAACATTCGTTTGTTGAGC
ATCAGCTCATCAAACATTCATCAAGCACTCGTGAATCAAGTATTCGCTCA
TCACGCACTCTCTTATCAAGTATTCGCGTATCACGCATTCGCTTATTAAG
CATTCGTGTATCACGAATTCCATCGTCACGCACTCGCTCATCAAGCCTAA
AAAGCCCTTCTTTTCGCATTGCCTCTCTCCTATAACTAAAAAGCCCTTCT
TTTCGCATTGCCTCTCTCCTATAA
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