mRNA_H-paniculata_contig12005.1286.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: K0SVI8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVI8_THAOC) HSP 1 Score: 75.9 bits (185), Expect = 4.440e-11 Identity = 75/279 (26.88%), Postives = 118/279 (42.29%), Query Frame = 2
Query: 302 DVVVFNTGLHPVGSFKRFEEINRAAVTALDDMGY----KGQL------IFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGAT----IIDGTEALRLRPDGHMKPPKDCLHYSLPGPPDLWSLLLFNTLLGR---IS*GFPFFM-------HLGHGLVCHYSLGFSILGYR------STVRITLRGSESSYGRRGSI*AALFN*GAALRRGSSICFYIC-CPPLDRNPISILRGLYTF 1045
D+VVFNTG+H + IN A T + G KG I R +PGH +C + T ++ N+S F +Y W M N++ + +S+ +T ++D + + RPDGH DC+HY LPGPPD+ S +L +TL+ R + P F +C+ S+ S+ Y S TL +GR G++ LF+ G L R ++ F + P+ R + ++GL+ F
Sbjct: 841 DIVVFNTGVHYRKDQALMKSINMAISTLENWQGICRLKKGSRRRWCLPILRTTVPGHPHCSNYTVPFNDLPT------MEHRVQNANYSAFGP-------NYFWWKMKGQNRLVEDAFSQRSSTLDYEVLDAYDVMMRRPDGHQGG-HDCVHYCLPGPPDVLSRMLLHTLVRRGRVLGHSSPTFFVSEIDQKEKSQYFICNRSI--SLPTYHDAEPEPSYKNDTLLLGGDKFGRMGNLWRVLFH-GLDLARDRNLSFAVIRTSPVGRQIMHDVQGLFPF 1102
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A7S4M8K7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8K7_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 3.170e-8 Identity = 54/182 (29.67%), Postives = 82/182 (45.05%), Query Frame = 2
Query: 305 VVVFNTGLHPVGSFKRFEEINRAAVTALDDMGYKGQ-----LIFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSS----YHWDD---MSEYNQIAKKIWSE-------AGATIIDGTEALRLRPDGHM------KPPK--DCLHYSLPGPPDLWSLLLFNTL 769
+++ NTG H G FK + +N+A L D+ K ++ R PGH C++ ++ ++ F EA +W Y WD M+E+ + A +++++ + ++D + LRPDGHM P K DCLHYSLPGP D WS LLF L
Sbjct: 255 LLIVNTGAHH-GKFKDYTYVNKAIDDFLSDVKTKFHRPKDIVVLRTTPPGHPACEKMDHPFENEAE-----REEFITSLTKDDTPEA---QEWKKKLKLYQWDKYEKMNEHLREAVRMYNKDDSHSGPSNVHLLDVSHMTNLRPDGHMGGIDNKNPNKKVDCLHYSLPGPIDWWSNLLFANL 427
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: UPI001D1A5573 (protein trichome birefringence-like 19 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI001D1A5573) HSP 1 Score: 66.2 bits (160), Expect = 3.870e-8 Identity = 85/312 (27.24%), Postives = 114/312 (36.54%), Query Frame = 2
Query: 2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-----------LTVDNPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVF---------------------NTGLHPVGSFKRFEEINRAAV-TALDDM----GYKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIA-KKIWSEAGATI--IDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
RS+ FVGDS +SL+ LS A P RV D +TGR + F H L N L + H D W + +FD +V N G H + + RAA TAL + G++G + R P H E T GD + ++ +D + F A D + E A ++ W GA + +D TEA+ LRPDGH PP DCLH+ LPGP DLW+ LLF+ L R
Sbjct: 255 RSMAFVGDSLARNHLKSLL------CILSQVAE--PVERVTTTETD-VTGRAVRRDFHYGSHGFNVSLFWSPFLVKANLSNAEQGLGLWDVHLDTADAR----WAAHIADFDYIVLSGTNWFFRPSVYYEGGRAVGRNGGAHHNATEAPVSGVVRAAFRTALGAIAAREGFRGDAVVRTVTPAHFENGEWD--TGGDCVRTRPLRRGERARDAVVAEFRAAQV--------DALRETEAAAAQRKWKRGGAELRLLDITEAMELRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWTELLFHMLAAR 543
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A0E0CQZ9_9ORYZ (PMR5N domain-containing protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0CQZ9_9ORYZ) HSP 1 Score: 64.7 bits (156), Expect = 1.240e-7 Identity = 82/310 (26.45%), Postives = 119/310 (38.39%), Query Frame = 2
Query: 2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-LTVD--------NPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVF---NTGLHPVGSFKRFEEINRAAV--------------------TALDDMG-----YKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
+S+ FVGDS F+SL+ LS A P V P +TGR + F+ + H T + A L + H D W + EFD VV N L P ++ + R + TAL + ++G+ I R+ P H E +TGG + +PF + EA ++ + D + E ++ E ++D TEA+ LRPDGH PP DCLH+ LPGP DLWS LLF+ L+ +
Sbjct: 287 KSMAFVGDSLARNHFKSLL------CLLSKVAQ--PVEVVGAAPEIDVTGRAVRRDFLYDSHGFTASLFWSPFLIKANLANATLGLWDLHLDTADAR----WAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNSAAPVTNATEIAVPRAVRAAFRTALGALAAAPGTFRGKAILRSVTPAHFENGEW-------NTGGDCVRTRPFRRDERALGAVEA----EYRAVQVDAVREAEAAVRRNGGEL--RLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPVDLWSELLFHMLVDQ 571
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A7S4SCW6_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SCW6_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.550e-7 Identity = 57/228 (25.00%), Postives = 93/228 (40.79%), Query Frame = 2
Query: 173 VRNDHLTVDNPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFD---VVVFNTGLHPVGSFKRFEEINRAAVTALDDMGYKGQ--LIFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSS-YHWDDMSEYNQIAKKIW----------SEAGATIIDGTEALRLRPDGHMKP------------PKDCLHYSLPGPPDLWSLLLFNTLL 772
+R+D + ++N +P H +PW + ++ + + NTG H ++F+ V +D Y+ + +++R +PGH NC E ++PF + FE + + + Y W+ YN K + S A ++D RPDGH+ KDCLHYSLPGPPD W+ L++N LL
Sbjct: 718 IRSDRI-IENGEPVDEEKEFKNCHDYC------HPWSERYKSYNGDTLFIVNTGPH-FQLHRQFQAAFDEFVAKIDSY-YRPRDVILWRTTVPGHPNCNETID------------QKPF-------NSFEEYAATEVTDFYSWNKFVGYNDYVTKAFDMRKREVPGPSRARMELLDVYPMTVQRPDGHVSSGECPECPGAKGFAKDCLHYSLPGPPDWWNHLMYNHLL 917
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: K0TQQ8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQQ8_THAOC) HSP 1 Score: 63.9 bits (154), Expect = 2.200e-7 Identity = 47/176 (26.70%), Postives = 78/176 (44.32%), Query Frame = 2
Query: 302 DVVVFNTGLHPVGSFKRFEEINRAAVTALDDM-GYKGQL-------------IFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIW---SEAGATIIDGTEALRLRPDGHMKPPKDCLHYSLPGPPDLWSLLLFNTLLGR 778
D+VVFNTG+H +++ E + R+ T + + ++G I R +PGH +C + T ++ N+S F +Y W M N++ + + S ++D + + RPDGH DC+HY LPGPPD+ S +L + L+ R
Sbjct: 414 DIVVFNTGVH----YRKDEALMRSINTTISTLENWQGICRLRKDSRRRWCLPILRTTVPGHPHCSNYTVPFNDLPT------MEHRVQNANYSAFGP-------NYFWWKMKGQNRLVEDAFRGSSTLDYVVLDAYDVMMRRPDGHQGG-HDCVHYCLPGPPDVLSRMLLHALVRR 571
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: Q0DXX0_ORYSJ (Os02g0729100 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0DXX0_ORYSJ) HSP 1 Score: 63.5 bits (153), Expect = 2.230e-7 Identity = 82/310 (26.45%), Postives = 117/310 (37.74%), Query Frame = 2
Query: 2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-LTVD--------NPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVFN--------------------TGLHPVGSFKRF---EEINRAAVTALDDMG-----YKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
+S+ FVGDS F+SL+ LS A P V P +TGR + F + H T + A L + H D W + EFD VV + G PV + + A TAL + ++G+ I R+ P H E +TGG + +PF + EA ++ + D + E ++ E ++D TEA+ LRPDGH PP DCLH+ LPGP DLWS LLF+ L+ +
Sbjct: 132 KSMAFVGDSLARNHFKSLL------CLLSKVAQ--PVELVGAAPEIDVTGRAVRRDFRYDSHGFTASLFWSPFLVKANLANATLGLWDLHLDTADAR----WAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNGAAPVTNATEIAVPRAVRAAFSTALGALAAAPGTFRGKAILRSVTPAHFENGEW-------NTGGDCVRTRPFRRDERALGAVEA----EYLAVQVDAVREAEAAVRRNGGEL--RLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWSELLFHMLVDQ 416
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A0E0GCN6_ORYNI (PMR5N domain-containing protein n=6 Tax=Oryza TaxID=4527 RepID=A0A0E0GCN6_ORYNI) HSP 1 Score: 63.2 bits (152), Expect = 3.620e-7 Identity = 82/310 (26.45%), Postives = 117/310 (37.74%), Query Frame = 2
Query: 2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-LTVD--------NPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVFN--------------------TGLHPVGSFKRF---EEINRAAVTALDDMG-----YKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
+S+ FVGDS F+SL+ LS A P V P +TGR + F + H T + A L + H D W + EFD VV + G PV + + A TAL + ++G+ I R+ P H E +TGG + +PF + EA ++ + D + E ++ E ++D TEA+ LRPDGH PP DCLH+ LPGP DLWS LLF+ L+ +
Sbjct: 232 KSMAFVGDSLARNHFKSLL------CLLSKVAQ--PVELVGAAPEIDVTGRAVRRDFRYDSHGFTASLFWSPFLVKANLANATLGLWDLHLDTADAR----WAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNGAAPVTNATEIAVPRAVRAAFRTALGALAAAPGTFRGKAILRSVTPAHFENGEW-------NTGGDCVRTRPFRRDERALGAVEA----EYLAVQVDAVREAEAAVRRNGGEL--RLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWSELLFHMLVDQ 516
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A0D3FA12_9ORYZ (Mediator of RNA polymerase II transcription subunit 11 n=3 Tax=Oryza TaxID=4527 RepID=A0A0D3FA12_9ORYZ) HSP 1 Score: 63.2 bits (152), Expect = 4.230e-7 Identity = 82/310 (26.45%), Postives = 117/310 (37.74%), Query Frame = 2
Query: 2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-LTVD--------NPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVFN--------------------TGLHPVGSFKRF---EEINRAAVTALDDMG-----YKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
+S+ FVGDS F+SL+ LS A P V P +TGR + F + H T + A L + H D W + EFD VV + G PV + + A TAL + ++G+ I R+ P H E +TGG + +PF + EA ++ + D + E ++ E ++D TEA+ LRPDGH PP DCLH+ LPGP DLWS LLF+ L+ +
Sbjct: 384 KSMAFVGDSLARNHFKSLL------CLLSKVAQ--PVELVGAAPEIDVTGRAVRRDFRYDSHGFTASLFWSPFLVKANLANATLGLWDLHLDTADAR----WAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNGAAPVTNATEIAVPRAVRAAFRTALGALAAAPGTFRGKAILRSVTPAHFENGEW-------NTGGDCVRTRPFRRDERALGAVEA----EYLAVQVDAVREAEAAVRRNGGEL--RLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWSELLFHMLVDQ 668
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: UPI001F5D0BED (protein trichome birefringence-like 21 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D0BED) HSP 1 Score: 62.4 bits (150), Expect = 5.360e-7 Identity = 88/306 (28.76%), Postives = 120/306 (39.22%), Query Frame = 2
Query: 2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDHLTVDNP--DPGTAPLNVMQAHCQAKDRGIRYP---WVQFLDEFDVVVFN--------------------TGLHPVGSFKRFEEIN-----RAAV-TALDDM----GYKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLL 772
+SI FVGDS F+SL+ LS A LP+ V P +TGR + + H + P N+ A D + P W L +FD VV + G G E+ RAA TAL + G++G+ I R P H G +TGG + +P+ D FEA ++ S + + E + +E ++D TEA+ LRPDGH PP DCLH+ LPGP DLWS LLF+ LL
Sbjct: 136 KSIAFVGDSLARNHFKSLL------CILSTVA--LPAE-VGTDPEIDVTGRAVRRDYYYGSHDFTASLFWSPFLVKANISNATLGMWDVHLDEPDGRWAAHLADFDHVVLSGTNWFLRQSVYYKGGRAVACNGGASCGVGGNLTELAVPLALRAAFRTALGAVASHKGFRGKAILRTLTPAHFE-------NGGWNTGGDCVRTRPYRRGDRTLGAFEA----EYRSAQVEALRETKAGLRTNGAEL--LLLDITEAMDLRPDGHPSRYGHPPGGSVEGDFVVDCLHWCLPGPIDLWSELLFHMLL 419 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12005.1286.1 >prot_H-paniculata_contig12005.1286.1 ID=prot_H-paniculata_contig12005.1286.1|Name=mRNA_H-paniculata_contig12005.1286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp MFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDHLback to top mRNA from alignment at H-paniculata_contig12005:1392..6594- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12005.1286.1 ID=mRNA_H-paniculata_contig12005.1286.1|Name=mRNA_H-paniculata_contig12005.1286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5203bp|location=Sequence derived from alignment at H-paniculata_contig12005:1392..6594- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12005:1392..6594- >mRNA_H-paniculata_contig12005.1286.1 ID=mRNA_H-paniculata_contig12005.1286.1|Name=mRNA_H-paniculata_contig12005.1286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig12005:1392..6594- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |