mRNA_H-paniculata_contig1200.1285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1200.1285.1
Unique NamemRNA_H-paniculata_contig1200.1285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1200.1285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1200contigH-paniculata_contig1200:20292..23630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size868
Cds size603
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1200.1285.1prot_H-paniculata_contig1200.1285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1200 23028..23630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928916.8717885-UTR-H-paniculata_contig1200:20291..205231622928916.8717885-UTR-H-paniculata_contig1200:20291..20523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1200 20292..20523 -
1691480666.842568-UTR-H-paniculata_contig1200:20291..205231691480666.842568-UTR-H-paniculata_contig1200:20291..20523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1200 20292..20523 -
1622928916.887852-UTR-H-paniculata_contig1200:22995..230271622928916.887852-UTR-H-paniculata_contig1200:22995..23027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1200 22996..23027 -
1691480666.852319-UTR-H-paniculata_contig1200:22995..230271691480666.852319-UTR-H-paniculata_contig1200:22995..23027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1200 22996..23027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928916.9045308-CDS-H-paniculata_contig1200:23027..236301622928916.9045308-CDS-H-paniculata_contig1200:23027..23630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1200 23028..23630 -
1691480666.8612554-CDS-H-paniculata_contig1200:23027..236301691480666.8612554-CDS-H-paniculata_contig1200:23027..23630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1200 23028..23630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1200.1285.1

>prot_H-paniculata_contig1200.1285.1 ID=prot_H-paniculata_contig1200.1285.1|Name=mRNA_H-paniculata_contig1200.1285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
SFTNDTPDPPRSPRPRTKHASFSLHKKQPKLSVQLQLAVRVFFPVYHPFV
PAAAPTQQRQRDSRRHCAHLAERSAGVRVTREAPTAAAIAAADLNGTNAD
QPFSLPFVLGQRNGTTTWARQANTQQQQQGYFFLVHPPVEQVAHNVCVLF
CLGGRVLRHIGGRVGEARSVVGKGTEHCLLLVASRCMERAGAAWLRHRRG
*
back to top

mRNA from alignment at H-paniculata_contig1200:20292..23630-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1200.1285.1 ID=mRNA_H-paniculata_contig1200.1285.1|Name=mRNA_H-paniculata_contig1200.1285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3339bp|location=Sequence derived from alignment at H-paniculata_contig1200:20292..23630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTCACCAACGACACACCAGATCCACCCCGTTCCCCCCGCCCCCGCAC
CAAGCACGCCTCATTCTCTCTCCACAAAAAGCAACCGAAGCTCTCCGTCC
AGCTGCAGCTAGCTGTGCGTGTTTTTTTTCCAGTTTACCACCCCTTTGTA
CCAGCAGCAGCACCGACACAGCAACGCCAACGCGACTCACGAAGGCACTG
CGCACATCTTGCAGAGAGAAGCGCGGGGGTGCGCGTCACACGAGAAGCGC
CCACCGCCGCCGCCATCGCTGCTGCCGACTTGAACGGGACGAACGCAGAT
CAGCCTTTTTCACTGCCCTTTGTGCTGGGACAAAGAAACGGCACAACAAC
TTGGGCAAGGCAGGCAAATACACAACAACAACAACAAGGGTATTTTTTTT
TAGTTCATCCACCTGTTGAACAGGTTGCACACAACGTCTGTGTGTTGTTT
TGTCTTGGTGGTCGAGTGCTACGGCACATAGGCGGGAGGGTAGGCGAGGC
GAGAAGCGTGGTGGGAAAGGGCACGGAGCATTGTTTGCTGTTGGTGGCTT
CCAGATGCATGGAGCGGGCGGGCGCAGCTTGGCTGCGGCATCGCCGAGGA
TGACGCGCAATTCTGCGTCGTTGCAGAATCTAGAGGTGTGTTGTATGCTG
TTTATGTATGTTTCTCTCAATAACTAAATGTGCCTGCTTCTCGATGAACA
GTGGTGTAGTAGTATAGACGAATAAAGCTGTTTTCAGGTAATAGCAACAG
CAAGGATGCACATGAATGTTAAGGTGGTTCACCACCAACAGGTGCCGCAT
GGTATCTGCCCCTTTGGCTATTTGTATTGTTTTAGTTGGCTATGTTTCTC
AGTCAGAGTTTCCAGTAGCACACAAAAAAACGAGAGAGGCGCACACAGCA
CAACCGGCGACGACAAACAATCATAAAAACACGCACAACAGGCTTAATTA
CGAAGAAAGGTAGTTTTTTCTTTTCTTTCCCTGTGTTCCAACTTGCCCTG
CCGACTCTTTGCTTTTTTTTCGATTCTTTGAAAATACGAAAAAAAAAGTG
GTCGTGCGATAAAAAATCAAACAGTGCAAAGACTGAAGACCGCAGCGGAG
AATCTCCAGATACCTGCACCTGTCGGAGAGACAGACGTATGTATGGCCTT
TCACCCTTATCCATCTCTCCCCTTGAATAATGTATCACACCCTGCAAGCT
ATGCTACTTTTAGATCTGGAACCTTTATTCTAACACTAATAGTACAATAT
GTGGAGATGCGCTTGTACTAAAATATATAATATAAGGTCGAACAGCCAAA
AGGACCTTCATGCTTCATCAATTCCAAGTGCTTTATTTGATAGGCTCCAA
TTACTCATATCCTTTAGCCGTCATCTGTAGTTCAAAAGCTTACGCCGACC
TTCATCGATACCGTCATCCCAAGTGCGCGATTACTCATACCGTTTTATGT
GAAGAGCTCTTCCTGAAATGAGTATGATTGTTGCTAGAAGGACTGACTGT
GGGGACCTCGACGTTAGTTGCTGGCGTCGGGGCCCTTCTCTCTTATTATA
TTGATAGTAAGTAAAGAGCTACCCGGAAACACGAAGATGGAGCGCTATGT
TTTGGGAATATTATACTTGTAGATAGAAGTAACAAGCGACCGCTCTTTTT
AAATGTACGTGGTAGGTGTTTTTTGGCGACTCGCCGCATTGCCTCCTCCT
CGCCTAGTCATGAAAATTTTATGATGCAACAATTACATTCTTGATAATAC
GCAAATTATCCCGCGCAGGTCATGATGAAGGGTACTTGCATAGGATGCAA
ACACAATAAGAAGTGGGAAATCTTGCCAAAGAAAAGCTCTAGGGTGTGGC
GCTCTGAACTGTTCAAATAGATGCCCGCTTTATGCATTTCATCTACTTGT
TGGTGTTGCCGTTAGTGTTGTTGATGGTTTCGGAGCAGCTAGTTGCACGC
ATCCCTCCGATCTCGATGCTTTCCGTGCCGGTCTCCACATAATTCCCAAA
ATTGGTCAATATCCACCTGCAAAGCAGGTCGACCCAACGCCCATCATATT
ATTACGGGGATAGGGGACCACTGGTCCCAGACAGAGCTAGTCCGGGTCAT
TTCATAAAAAGCACAGACTGGGAGTTTGCGTGGGTTCTTCGTATAACGGC
TGCCACGCCACATAGACGATTTTTCGTAGGATTCATTATTTGTTCCGAAA
TAGCCTTCGCCCCCCCGAACAGAAGCTGCACTTGTTCAGCAAAAGGTCAC
ACAATGGATGATGTCATTGAGGTGAAGCACAAACGACGCTTGTAGTAGGT
CTATTGACTATGGACCACCTTACGCATCAGCGAGTCTACAATATCTGGAG
GCCATAGGCGTTGCTGGCACTAGCTGATATCTGGAGGTTTGTTGTTCCTC
TCCATAGTGGCAGTTGCGTTGCACTGAGACGCACTCAAGTACTTCAGCAG
TCGTGGGTGTGATCCGAGAGAGTGAGTGGTATTGATTTCACCGTACCGTA
CCCCACCTACTATATGCTCATATAGCAACCAACCGACTTATCACCGTTCA
CAAGAGTTTAGTTGGTGAGACTTATATTATACTCGAGTTTCTCTTAGGTT
ATGGCGCCAACACAGGTGAAGCTAGAAGAAAATTGTTCCGAAATCTAACA
ACACTAACAGTATAGAGTACTTCCGCCGGCAATGGGGTTTATCCTTCTAT
TCGCTTGAGTGAGAAAGGACTTATCTGTTTTAGGTCACGGAGCGCAGGAT
ATACATGTCCTGTATCGATAGGGTCTGGGGCTTGTTTGGAAGTAAGCCAG
GCGAAGACGGATCTGAGTCGGGGCAGGTCGCCCATTCAACTCGAAAGAGT
TTGATGTTATTATGGACAGGGTTGGACAATAACCGAAGAAAGACAAACAG
TTCTCGTACAGAACCAGGGCCGTCGGGTACAGTCGGGGCTAGCAATCATA
TTACACCGAATGCTAACGCCAACACCAAAAATACGTCCCTTTCCATTGCT
TTCGCGCCACGAACGACGTCATCCGTGATTTCGTTCTCGTTGTTGTTGCT
GCTGCTGTTACGTTCTGTTTCTGAACCACCCTCTCGCACAAAACAAACGA
AAAATAGGCAGCGGCACACGCCGCCGCCCTCGCCGATGGCCTCTTGGCCG
CAGGCGGCGCAACCAGGGTATCTCCGTCCTCAGCAGGTTCGCTGGCGGCC
AATCACAACACGACGGCAGCTACTACTCCAGGTGGCAGCAGGAGCAACAG
CGGCGGGGCGGGAACCAGGAGGGGTGGTCCTTCTGCTGCCTCTAATAGCT
CAAGGGTAAAGCGGGAAGGAGGCCTTGCGAGCCCGGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1200:20292..23630-

>mRNA_H-paniculata_contig1200.1285.1 ID=mRNA_H-paniculata_contig1200.1285.1|Name=mRNA_H-paniculata_contig1200.1285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig1200:20292..23630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTCACCAACGACACACCAGATCCACCCCGTTCCCCCCGCCCCCGCAC
CAAGCACGCCTCATTCTCTCTCCACAAAAAGCAACCGAAGCTCTCCGTCC
AGCTGCAGCTAGCTGTGCGTGTTTTTTTTCCAGTTTACCACCCCTTTGTA
CCAGCAGCAGCACCGACACAGCAACGCCAACGCGACTCACGAAGGCACTG
CGCACATCTTGCAGAGAGAAGCGCGGGGGTGCGCGTCACACGAGAAGCGC
CCACCGCCGCCGCCATCGCTGCTGCCGACTTGAACGGGACGAACGCAGAT
CAGCCTTTTTCACTGCCCTTTGTGCTGGGACAAAGAAACGGCACAACAAC
TTGGGCAAGGCAGGCAAATACACAACAACAACAACAAGGGTATTTTTTTT
TAGTTCATCCACCTGTTGAACAGGTTGCACACAACGTCTGTGTGTTGTTT
TGTCTTGGTGGTCGAGTGCTACGGCACATAGGCGGGAGGGTAGGCGAGGC
GAGAAGCGTGGTGGGAAAGGGCACGGAGCATTGTTTGCTGTTGGTGGCTT
CCAGATGCATGGAGCGGGCGGGCGCAGCTTGGCTGCGGCATCGCCGAGGA
TGATCTTTCACCAACGACACACCAGATCCACCCCGTTCCCCCCGCCCCCG
CACCAAGCACGCCTCATTCTCTCTCCACAAAAAGCAACCGAAGCTCTCCG
TCCAGCTGCAGCTAGCTGTGCGTGTTTTTTTTCCAGTTTACCACCCCTTT
GTACCAGCAGCAGCACCGACACAGCAACGCCAACGCGACTCACGAAGGCA
CTGCGCACATCTTGCAGAGAGAAGCGCGGGGGTGCGCGTCACACGAGAAG
CGCCCACCGCCGCCGCCATCGCTGCTGCCGACTTGAACGGGACGAACGCA
GATCAGCCTTTTTCACTGCCCTTTGTGCTGGGACAAAGAAACGGCACAAC
AACTTGGGCAAGGCAGGCAAATACACAACAACAACAACAAGGGTATTTTT
TTTTAGTTCATCCACCTGTTGAACAGGTTGCACACAACGTCTGTGTGTTG
TTTTGTCTTGGTGGTCGAGTGCTACGGCACATAGGCGGGAGGGTAGGCGA
GGCGAGAAGCGTGGTGGGAAAGGGCACGGAGCATTGTTTGCTGTTGGTGG
CTTCCAGATGCATGGAGCGGGCGGGCGCAGCTTGGCTGCGGCATCGCCGA
GGATGA
back to top