mRNA_H-paniculata_contig120.1282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig120.1282.1
Unique NamemRNA_H-paniculata_contig120.1282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig120.1282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig120contigH-paniculata_contig120:24936..25137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_000770.1
Exons1
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928916.6509407-CDS-H-paniculata_contig120:24935..251361622928916.6509407-CDS-H-paniculata_contig120:24935..25136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig120 24936..25136 +
1691480666.722545-CDS-H-paniculata_contig120:24935..251361691480666.722545-CDS-H-paniculata_contig120:24935..25136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig120 24936..25136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig120.1282.1prot_H-paniculata_contig120.1282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig120 24936..25136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig120.1282.1

>prot_H-paniculata_contig120.1282.1 ID=prot_H-paniculata_contig120.1282.1|Name=mRNA_H-paniculata_contig120.1282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
NNSQPRKVVTSIFVAESLSLAGNRIGDAGCDALRLEILENRRPDSVALVG
AATTFRWLSVSGNPRIS
back to top

mRNA from alignment at H-paniculata_contig120:24936..25137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig120.1282.1 ID=mRNA_H-paniculata_contig120.1282.1|Name=mRNA_H-paniculata_contig120.1282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=202bp|location=Sequence derived from alignment at H-paniculata_contig120:24936..25137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAATAGTCAACCCAGAAAAGTGGTGACCTCGATTTTCGTAGCCGAGAG
CTTAAGCCTTGCCGGAAACCGGATCGGGGATGCTGGGTGCGACGCCCTTC
GGCTTGAAATACTGGAGAATAGGAGACCCGATAGCGTTGCACTTGTTGGT
GCTGCTACCACGTTTCGGTGGTTGAGTGTTTCTGGTAACCCACGAATATC
AG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig120:24936..25137+

>mRNA_H-paniculata_contig120.1282.1 ID=mRNA_H-paniculata_contig120.1282.1|Name=mRNA_H-paniculata_contig120.1282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig120:24936..25137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATAATAGTCAACCCAGAAAAGTGGTGACCTCGATTTTCGTAGCCGAGAG
CTTAAGCCTTGCCGGAAACCGGATCGGGGATGCTGGGTGCGACGCCCTTC
GGCTTGAAATACTGGAGAATAGGAGACCCGATAGCGTTGCACTTGTTGGT
GCTGCTACCACGTTTCGGTGGTTGAGTGTTTCTGGTAACCCACGAATATC
AAATAATAGTCAACCCAGAAAAGTGGTGACCTCGATTTTCGTAGCCGAGA
GCTTAAGCCTTGCCGGAAACCGGATCGGGGATGCTGGGTGCGACGCCCTT
CGGCTTGAAATACTGGAGAATAGGAGACCCGATAGCGTTGCACTTGTTGG
TGCTGCTACCACGTTTCGGTGGTTGAGTGTTTCTGGTAACCCACGAATAT
CA
back to top