mRNA_H-paniculata_contig120.1281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig120.1281.1
Unique NamemRNA_H-paniculata_contig120.1281.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig120.1281.1 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 6.700e-93
Identity = 151/262 (57.63%), Postives = 178/262 (67.94%), Query Frame = 1 
Query:    1 MHCPWTSKTRAWGYEVIRGIDEDDPERVIQAFKHPAELAFVDLNSQVERDYGGYAWTEWMHAYFGDTALHIAIKWKRHHAVKALLSLQPNWKIRNEAGNTAECLARELYGKDMPTLIDEQEREYEIDTMRREDEVMRSLVALERRARTLAKQKMLDQLRTARTSGVQAEAVTLLKHGRVL----------------GDAAVKADQRARQFKTRSNNVGARWVSHICRELRRNRFSAQRGSMRRNVVPARAPVLKSSQSSPPP 738
            MH  WT KTR WGYEVIRGIDEDDP RVI+AF+ P  LAFVDLN+QVE DYGGYAWT+WMH +FGDTALHIA+KWKR+ AVKA+LSL+PNW I NEAG TAE L   LYGK M    DEQEREYE D MR E+E MR+L+A E+ AR  A+   L+    ART G+  EA  LL+HGRV+                 DAA   D  ++   +R+ +    WV H+CRELRRNRF+A  G MRRNVVPARAP    + +  PP
Sbjct:    1 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVVITDGGKSNGNNHRHHPHDAADNTDPSSQSDTSRAADSSG-WVKHVCRELRRNRFAAHLGEMRRNVVPARAPPRVPAAAGVPP 261
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BLAST of mRNA_H-paniculata_contig120.1281.1 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.130e-31
Identity = 71/170 (41.76%), Postives = 103/170 (60.59%), Query Frame = 1 
Query:   34 WGYEVIRGIDEDDPERVIQAFKHPAELAFVDLNSQVERD-YGGYAWTEWMHAYFGDTALHIAIKWKRHHAVKALLSLQPNWKIRNEAGNTAECLARELYGKDMPTLIDEQEREYEIDTMRREDEVMRSLVALERRARTLAKQKMLDQLRTARTSGVQAEAVTLLKHGRVL 540
            WG++ IR ID+DDP  V++A+K P    F D++  V++  YG YA+T+ M  + GDTALH+A+KW++  A KALL L   W I N  G TAE +  + + K M TL  +QEREY    M  ED++M +L+A E+  +       L QL   RT+G   EA+ L+  GR++
Sbjct:   14 WGFDAIRAIDQDDPALVLRAYKLP----FADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM 179
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BLAST of mRNA_H-paniculata_contig120.1281.1 vs. uniprot
Match: A0A7S3Y2N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N4_HETAK)

HSP 1 Score: 101 bits (252), Expect = 3.010e-23
Identity = 70/169 (41.42%), Postives = 91/169 (53.85%), Query Frame = 1 
Query:    1 MHCPWTSK-TRAWGYEVIRGIDEDDPERVIQAFKHPAELAFVDLNSQVERDYGGYAWTEWMHAYFGDTALHIAIKWKRHHAVKALLSLQPNWKIRNEAGNTAECLARELYGKDMPTLIDEQEREYEIDTMRREDEVMRSLVALERRARTLAKQKMLD-QLRTARTSGVQ 501
            MH P   + T +WGYEVIRGIDEDD ERV +A +         +N QV  +YGGY WT  +H Y+GDTA+H+AIK+ R    + LL L P+  + N  G TA  LA   Y K +  L+     E   D M  E+       A ERR   L +Q  LD + R AR  G++
Sbjct:    1 MHRPHLIQATSSWGYEVIRGIDEDDHERVTEALR---SWRGKKINIQVGEEYGGYRWTARLHEYYGDTAVHLAIKFSRPRIFRKLLLLAPDLTLYNGQGQTAAELAESTYKKPIKALVRAAWEEETRDRMAAEE-------AYERRR--LREQAELDARARAARREGLR 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig120.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH33_ECTSI6.700e-9357.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z280_9STRA1.130e-3141.76Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y2N4_HETAK3.010e-2341.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig120contigH-paniculata_contig120:16877..19081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size744
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig120.1281.1prot_H-paniculata_contig120.1281.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig120 16877..19081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928916.5458717-CDS-H-paniculata_contig120:16876..170141622928916.5458717-CDS-H-paniculata_contig120:16876..17014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig120 16877..17014 +
1691480666.6884787-CDS-H-paniculata_contig120:16876..170141691480666.6884787-CDS-H-paniculata_contig120:16876..17014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig120 16877..17014 +
1622928916.580317-CDS-H-paniculata_contig120:18036..183111622928916.580317-CDS-H-paniculata_contig120:18036..18311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig120 18037..18311 +
1691480666.7043035-CDS-H-paniculata_contig120:18036..183111691480666.7043035-CDS-H-paniculata_contig120:18036..18311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig120 18037..18311 +
1622928916.5984824-CDS-H-paniculata_contig120:18750..190811622928916.5984824-CDS-H-paniculata_contig120:18750..19081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig120 18751..19081 +
1691480666.7142017-CDS-H-paniculata_contig120:18750..190811691480666.7142017-CDS-H-paniculata_contig120:18750..19081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig120 18751..19081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig120.1281.1

>prot_H-paniculata_contig120.1281.1 ID=prot_H-paniculata_contig120.1281.1|Name=mRNA_H-paniculata_contig120.1281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MHCPWTSKTRAWGYEVIRGIDEDDPERVIQAFKHPAELAFVDLNSQVERD
YGGYAWTEWMHAYFGDTALHIAIKWKRHHAVKALLSLQPNWKIRNEAGNT
AECLARELYGKDMPTLIDEQEREYEIDTMRREDEVMRSLVALERRARTLA
KQKMLDQLRTARTSGVQAEAVTLLKHGRVLGDAAVKADQRARQFKTRSNN
VGARWVSHICRELRRNRFSAQRGSMRRNVVPARAPVLKSSQSSPPPR*
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mRNA from alignment at H-paniculata_contig120:16877..19081+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig120.1281.1 ID=mRNA_H-paniculata_contig120.1281.1|Name=mRNA_H-paniculata_contig120.1281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2205bp|location=Sequence derived from alignment at H-paniculata_contig120:16877..19081+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTGCCCATGGACGAGCAAAACGCGAGCCTGGGGGTACGAAGTGAT
CCGCGGTATCGACGAGGATGACCCGGAGCGCGTAATTCAGGCCTTTAAGC
ACCCGGCGGAGCTCGCATTCGTCGACCTCAATTCGCAGGTATAGCAGCTT
ATTTCCTACACATGAATTGCTCGATGTGCTGCCCCACATTGCTTCAATCG
CAACGCCCATCTCCCGCGACCACCGCAACCGACACATGGTACCGTAGTGA
AGTAGTGAAAATAATCTATGTTCTTCTTTACTATTAGAATAGTACCCGTA
AGAGCACGTGCCTGAAACATGCGGATGGCGTTAGCGTAAGAGAATACCGA
AATCGGATTGCTGTCCGCCACTAATACACTTCTAACAAAGCACCCACAGT
CATCAGCCACTTAGCCAACGTCTGACAAACTCTTGTCTCTCCTTAGTACA
TATATTGGAAGATGTAGTTAGAGCCGTTCTAAGAGGCACTTGGTTCTATA
CGAGGCCGTTTTTGTCTGATTTTTTCCGTTTTTTCCGTTATTTCGGTTTT
CCGAAAATCGTAACTCGTGATAACGATATCAGAATTGGTGGCAAGGTGCG
GGAACACTATACAGCACGTTGCCCTCATACTTCCGGTGCAATTTGGTCAT
ACTCGTGAATTTGTTCAGCTCGGTATCGCAATTTCCAATTTTCAGAAAAC
GGAAAAAAACGGAAAAAATCGAACAAAAACGATCTCATTTAGAACATCCT
TCTGAAACAGGTAGGTATGGTGGCAGACACTACTACAGGGGCACAAAGCA
GTGGTTGGTAGGCTGCCACAAACAGAAGACTCCTGCAATTCTGATAATCC
TGTTTATCAGACGTTAGCGCCGAATGGTGTCATATATATTTCTTTAAACA
GAAGGCTCCGCGCATGCTGAATAAACAACACGAGTTTTTTTTCCACAGTG
CGCCATACTTCATACCACCACCCGCCACCAGCAAAAGCCAAGAAAACGGA
TAATGTGAAGCAGCTGCTTAAACCGCAGATCATTTGGTCCGATCTAAATG
AATTCCAGATATAAAACCTGAGCGCACCAGGCTATGCGTGAATAATTTTT
TCAATGAGCGTCTATTGCTATACGCCAGAGCATGTTGTTCTGATGTATTG
CGCGTCTCAGGTAGAGAGAGACTACGGAGGCTATGCATGGACGGAGTGGA
TGCATGCATACTTCGGTGATACAGCCCTTCATATAGCAATCAAATGGAAG
CGCCACCATGCGGTAAAGGCGTTGCTCTCTCTGCAGCCGAACTGGAAGAT
CCGCAATGAGGCTGGCAACACCGCAGAATGTCTCGCCCGGGAATTGTATG
GTAAGGACATGCCAACGCTGATAGACGAACAGGAGCGAGAATATGAGATC
GACACGATGCGACGCGAAGACGAGGTGATGAGGAGGTGATCAATTTACCA
GCTTCTACTAGAAGTCTGGGTGATGTGATGAACGTTTTGGCGCCCTACCA
AAAGTTGTCACGAACCCACAAAGCGTACGGCACCGCGGCAAAAATATTTC
CTCCCTACTCATGTTCTACCAAGCCAAGGCCGAGAAGTAAAAATATTAGG
TTTTCTCTTTTGCTATACGAAGACACTCACCGTGCCATCCTGCTACAGTA
GTCCAACGTCATCTTGAAACCAACCTCAGTAACAACCTTCCATGCCTGTT
TTATACTACCATCTTAAACATGACATGTAAATCTAGTGACAAAACTAGTC
TTCACTGCTGCTGCCACGAATAATTGATTGAACATGTCGAACATGCACCT
CAAAATGTGAGATTTTTGTTACACCCCCCCACCCTCCTCATGCACCCTCC
TCCCTCCCTACCCCTTAAAAAAAGCTTGGTCGCACTGGAGCGACGGGCAC
GGACGCTCGCGAAGCAAAAGATGCTTGACCAGCTCCGTACCGCACGAACG
AGCGGCGTTCAAGCGGAAGCCGTGACACTCTTAAAACACGGGAGGGTCCT
CGGTGATGCAGCGGTGAAGGCCGATCAACGCGCCCGGCAGTTTAAAACTC
GGAGTAACAACGTTGGCGCCCGCTGGGTCTCTCACATCTGCCGCGAGCTC
CGGCGTAATCGCTTCTCTGCCCAACGCGGGTCCATGCGCCGAAACGTTGT
TCCGGCGCGCGCTCCTGTTTTGAAATCTTCGCAGTCATCGCCACCCCCGA
GGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig120:16877..19081+

>mRNA_H-paniculata_contig120.1281.1 ID=mRNA_H-paniculata_contig120.1281.1|Name=mRNA_H-paniculata_contig120.1281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig120:16877..19081+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTGCCCATGGACGAGCAAAACGCGAGCCTGGGGGTACGAAGTGAT
CCGCGGTATCGACGAGGATGACCCGGAGCGCGTAATTCAGGCCTTTAAGC
ACCCGGCGGAGCTCGCATTCGTCGACCTCAATTCGCAGATGCATTGCCCA
TGGACGAGCAAAACGCGAGCCTGGGGGTACGAAGTGATCCGCGGTATCGA
CGAGGATGACCCGGAGCGCGTAATTCAGGCCTTTAAGCACCCGGCGGAGC
TCGCATTCGTCGACCTCAATTCGCAGGTAGAGAGAGACTACGGAGGCTAT
GCATGGACGGAGTGGATGCATGCATACTTCGGTGATACAGCCCTTCATAT
AGCAATCAAATGGAAGCGCCACCATGCGGTAAAGGCGTTGCTCTCTCTGC
AGCCGAACTGGAAGATCCGCAATGAGGCTGGCAACACCGCAGAATGTCTC
GCCCGGGAATTGTATGGTAAGGACATGCCAACGCTGATAGACGAACAGGA
GCGAGAATATGAGATCGACACGATGCGACGCGAAGACGAGGTGATGAGGA
GGTAGAGAGAGACTACGGAGGCTATGCATGGACGGAGTGGATGCATGCAT
ACTTCGGTGATACAGCCCTTCATATAGCAATCAAATGGAAGCGCCACCAT
GCGGTAAAGGCGTTGCTCTCTCTGCAGCCGAACTGGAAGATCCGCAATGA
GGCTGGCAACACCGCAGAATGTCTCGCCCGGGAATTGTATGGTAAGGACA
TGCCAACGCTGATAGACGAACAGGAGCGAGAATATGAGATCGACACGATG
CGACGCGAAGACGAGGTGATGAGGAGCTTGGTCGCACTGGAGCGACGGGC
ACGGACGCTCGCGAAGCAAAAGATGCTTGACCAGCTCCGTACCGCACGAA
CGAGCGGCGTTCAAGCGGAAGCCGTGACACTCTTAAAACACGGGAGGGTC
CTCGGTGATGCAGCGGTGAAGGCCGATCAACGCGCCCGGCAGTTTAAAAC
TCGGAGTAACAACGTTGGCGCCCGCTGGGTCTCTCACATCTGCCGCGAGC
TCCGGCGTAATCGCTTCTCTGCCCAACGCGGGTCCATGCGCCGAAACGTT
GTTCCGGCGCGCGCTCCTGTTTTGAAATCTTCGCAGTCATCGCCACCCCC
GAGGTGACTTGGTCGCACTGGAGCGACGGGCACGGACGCTCGCGAAGCAA
AAGATGCTTGACCAGCTCCGTACCGCACGAACGAGCGGCGTTCAAGCGGA
AGCCGTGACACTCTTAAAACACGGGAGGGTCCTCGGTGATGCAGCGGTGA
AGGCCGATCAACGCGCCCGGCAGTTTAAAACTCGGAGTAACAACGTTGGC
GCCCGCTGGGTCTCTCACATCTGCCGCGAGCTCCGGCGTAATCGCTTCTC
TGCCCAACGCGGGTCCATGCGCCGAAACGTTGTTCCGGCGCGCGCTCCTG
TTTTGAAATCTTCGCAGTCATCGCCACCCCCGAGGTGA
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