mRNA_H-paniculata_contig12.1278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12.1278.1
Unique NamemRNA_H-paniculata_contig12.1278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.720e-12
Identity = 54/155 (34.84%), Postives = 75/155 (48.39%), Query Frame = 3
Query:   36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPIYREKKRG------TCLLRVLHPTQHAPRSR-----RLGCTRGYGLGRGWMVSVTVRLLSLRRTTDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLA 467
            W  L+ PSK  +   +  +SK LESVRKDVECFFG++KGRFRILKL I   K+        TC   +LH   H+  ++             GL   W  + ++ L S+     G    +       ++    TR  +LIA F   + KNDI WL+
Sbjct:  335 WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCC--ILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSV-----GAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWLS 482          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.350e-12
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKK 194
            W  L+ PSK     E+T +S+TLESVRKDVECFFG+LKGRFRILKL + YR K+
Sbjct:    2 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKE 55          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.370e-12
Identity = 58/161 (36.02%), Postives = 74/161 (45.96%), Query Frame = 3
Query:   36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR-----GTCLLRVLHPTQHA-----PRSRRLGCTRGYGLGRGWMVSVTVRLLSLRRT-----TDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLAR 470
            W  L+ PSK     E+T +S+TLESVRKDVECFFG+LKGRFRILKL + YR KK       TC   +LH   H           +      GL   W         S+  T      +G       + T     +      +LI  FS  ++ NDI WL+R
Sbjct:  333 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCC--ILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSR 491          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.500e-12
Identity = 56/161 (34.78%), Postives = 73/161 (45.34%), Query Frame = 3
Query:   36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR-----GTCLLRVLHPTQHA-----PRSRRLGCTRGYGLGRGWMVSVTVRLLSLRRT-----TDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLAR 470
            W  L+ PSK     E+T +S+TLESVRKDVECFF +LKGRFRILKL + YR K+       TC   +LH   H           +      GL   W         S+  T      +G       + T     +      +LI  FS  ++ NDI WL+R
Sbjct:   12 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCC--ILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSR 170          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.650e-12
Identity = 59/154 (38.31%), Postives = 73/154 (47.40%), Query Frame = 3
Query:   72 TDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPIYREKKRG------TCLLRVLHPTQHA-------PRSRRLGCTRGYGLGRGWMVSVTVRLLSLRRT--TDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLAR*ALGSS 488
            TD E++WSK LESVRKDVE FFG+LKGRFRILKL I  + +        TC    LH   HA          +  G   G GL   W     +   ++  T  T   D G T   TT     +  ++  L+ HF   R KNDI WL+    G S
Sbjct:    4 TDMESKWSKALESVRKDVEYFFGILKGRFRILKLGILFQHENVIDNLFFTCC--TLHSMLHAFDGLDELETVKEWGGRAGLGLHGTWDNDPLLDDSTVGSTSPTPADDDGTT---TTPQAAHEELKN-ALMTHFEFRRSKNDIRWLSYATTGKS 151          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.120e-12
Identity = 53/155 (34.19%), Postives = 74/155 (47.74%), Query Frame = 3
Query:   36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPIYREKKRG------TCLLRVLHPTQHAPRSR-----RLGCTRGYGLGRGWMVSVTVRLLSLRRTTDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLA 467
            W  L+ PSK  +   +  +SK LESVRKDVECFFG++KG FRILKL I   K+        TC   +LH   H+  ++             GL   W  + ++ L S+     G    +       ++    TR  +LIA F   + KNDI WL+
Sbjct:   94 WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCC--ILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSV-----GAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWLS 241          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.130e-11
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    6 SSLQKRMSQDWAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR 197
            +S+    S +W +L+ PSK  L++ +  + K LESVRKDVECFFG+LKGRFRILKL + Y+ ++R
Sbjct:    8 TSIALTASNNWQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQER 72          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.220e-10
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 3
Query:   36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR 197
            W +L+ PSK  L++++  +SK LESVRKDVECFFG+LKGRFRILKL + Y+ ++R
Sbjct:  182 WQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQER 236          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.510e-10
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   33 DWAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPIYREKK 194
            +W  L+ PSK   ++++T +S+ LESVRKDVECFFG+LKGRFRILKL +   K+
Sbjct:   93 EWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKR 146          
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.090e-10
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 3
Query:   36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR 197
            W +L+ PSK  L++ +  +SK LESVRKDVECFFG+LKGRFRILKL + Y+ ++R
Sbjct:  292 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQER 346          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE1.720e-1234.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE2.350e-1264.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE2.370e-1236.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L135_9PHAE2.500e-1234.78Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML5_9PHAE3.650e-1238.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE4.120e-1234.19DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZL5_9PHAE3.130e-1152.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE1.220e-1060.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JQM6_9PHAE2.510e-1057.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE3.090e-1060.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12contigH-paniculata_contig12:68229..69454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size527
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12.1278.1prot_H-paniculata_contig12.1278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12 68409..69431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.5502326-UTR-H-paniculata_contig12:68228..684081622928914.5502326-UTR-H-paniculata_contig12:68228..68408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 68229..68408 -
1691480665.82667-UTR-H-paniculata_contig12:68228..684081691480665.82667-UTR-H-paniculata_contig12:68228..68408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 68229..68408 -
1622928914.6011434-UTR-H-paniculata_contig12:69431..694541622928914.6011434-UTR-H-paniculata_contig12:69431..69454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 69432..69454 -
1691480665.8555415-UTR-H-paniculata_contig12:69431..694541691480665.8555415-UTR-H-paniculata_contig12:69431..69454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 69432..69454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.5682163-CDS-H-paniculata_contig12:68408..687201622928914.5682163-CDS-H-paniculata_contig12:68408..68720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 68409..68720 -
1691480665.837552-CDS-H-paniculata_contig12:68408..687201691480665.837552-CDS-H-paniculata_contig12:68408..68720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 68409..68720 -
1622928914.5847075-CDS-H-paniculata_contig12:69419..694311622928914.5847075-CDS-H-paniculata_contig12:69419..69431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 69420..69431 -
1691480665.8468382-CDS-H-paniculata_contig12:69419..694311691480665.8468382-CDS-H-paniculata_contig12:69419..69431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 69420..69431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12.1278.1

>prot_H-paniculata_contig12.1278.1 ID=prot_H-paniculata_contig12.1278.1|Name=mRNA_H-paniculata_contig12.1278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MSQDWAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKL
PIYREKKRGTCLLRVLHPTQHAPRSRRLGCTRGYGLGRGWMVSVTVRLLS
LRRTTDG*
back to top

mRNA from alignment at H-paniculata_contig12:68229..69454-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12.1278.1 ID=mRNA_H-paniculata_contig12.1278.1|Name=mRNA_H-paniculata_contig12.1278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-paniculata_contig12:68229..69454- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTTCCTCTCTGCAGAAGAGGATGTCACAAGACGTGAGTGCATTCCAG TTAAGCTGAAGGTGGGTCGGCATCTTTAGCTTGACTATACCGTACTGTAT TATACTAATAGTATACATTACTGCACAGTCTGTAGTATATATTGTAGTGT ATAGTACAGTTGTACCGTACCCGACTATACTGTCTGTACTCTACTGTAGA GTACTGGACGAACCCCACTGTACAATACTACACTGCACACTGCTATACCG AACCCCACTGTACTGTACTCCACTGTGCTGTATGACGTTGAATTGTTCAC GCCCATCGACCTCTGCCTGCAGTCATGTATGTGCATGATTGCGCAACAAC ACAAGCTGCAAACGAATACCTGCTGCTTTTTCTCACAGTGCTCATTGCGA CGTACCTGTTTAGTTACGCTATGTTAGATATAATCTTGCTGCAAGTGAGT CTTCACATTTGCCAAGTTTAAGACCCTTGAAGGCTCTTAAACTTGAGTTT AAAAGTAACGAGACTAATGCTAACCGCAACCAAACACACCTTTCAAAATT GAGGAATTCGAGTGCAATTGATCTCAATAACTATTGTCATTTATTATGCC GGCATTACCGCCCTGGTGCGCCCGTTTCAGTTGGTGATAACAGCCCCGTG TGCGAAATCAACACACACACATCCTCGCCCTGTGGAAACCTAAGACCCTC TCGTCGACCCCATCGCGTCTTCACACACACGCAGTGGGCTGTGCTCATGC TCCCTTCAAAGCGCTCCTTGACCGATGAGGAGACACGATGGAGCAAGACG TTGGAGAGCGTACGAAAGGATGTGGAATGTTTCTTCGGCGTCCTGAAGGG CAGGTTCAGAATCCTCAAGCTTCCCATCTACCGCGAGAAAAAAAGAGGGA CATGTCTTCTTCGCGTGCTGCATCCTACACAACATGCTCCACGCTCACGA CGACTTGGATGTACTAGAGGATATGGACTGGGCCGAGGGTGGATGGTCAG CGTGACCGTGAGGTTGCTGAGCCTGAGACGGACCACGGATGGGTAGGATT CAGGCGCAACTTTGGCGGCGACGACGGGCATGAAGCGGAGTCAGACCACA AGGTCTTAGAAGTTGATCGCACATTTCTCAAACCATAGGAAGAAAAATGA CATCATGTGGCTTGCTAGGTAGGCGTTGGGGTCATCGCCGGGCAGAAAAC GGGATGAAATCGAGGTTGAACCGTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12:68229..69454-

>mRNA_H-paniculata_contig12.1278.1 ID=mRNA_H-paniculata_contig12.1278.1|Name=mRNA_H-paniculata_contig12.1278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig12:68229..69454- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACAAGACATGTCACAAGACTGGGCTGTGCTCATGCTCCCTTCAAA
GCGCTCCTTGACCGATGAGGAGACACGATGGAGCAAGACGTTGGAGAGCG
TACGAAAGGATGTGGAATGTTTCTTCGGCGTCCTGAAGGGCAGGTTCAGA
ATCCTCAAGCTTCCCATCTACCGCGAGAAAAAAAGAGGGACATGTCTTCT
TCGCGTGCTGCATCCTACACAACATGCTCCACGCTCACGACGACTTGGAT
GTACTAGAGGATATGGACTGGGCCGAGGGTGGATGGTCAGCGTGACCGTG
AGGTTGCTGAGCCTGAGACGGACCACGGATGGGTAGTGGGCTGTGCTCAT
GCTCCCTTCAAAGCGCTCCTTGACCGATGAGGAGACACGATGGAGCAAGA
CGTTGGAGAGCGTACGAAAGGATGTGGAATGTTTCTTCGGCGTCCTGAAG
GGCAGGTTCAGAATCCTCAAGCTTCCCATCTACCGCGAGAAAAAAAGAGG
GACATGTCTTCTTCGCGTGCTGCATCCTACACAACATGCTCCACGCTCAC
GACGACTTGGATGTACTAGAGGATATGGACTGGGCCGAGGGTGGATGGTC
AGCGTGACCGTGAGGTTGCTGAGCCTGAGACGGACCACGGATGGGTAG
back to top