mRNA_H-paniculata_contig12.1278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.720e-12 Identity = 54/155 (34.84%), Postives = 75/155 (48.39%), Query Frame = 3
Query: 36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPIYREKKRG------TCLLRVLHPTQHAPRSR-----RLGCTRGYGLGRGWMVSVTVRLLSLRRTTDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLA 467
W L+ PSK + + +SK LESVRKDVECFFG++KGRFRILKL I K+ TC +LH H+ ++ GL W + ++ L S+ G + ++ TR +LIA F + KNDI WL+
Sbjct: 335 WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCC--ILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSV-----GAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWLS 482
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 2.350e-12 Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 3
Query: 36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKK 194
W L+ PSK E+T +S+TLESVRKDVECFFG+LKGRFRILKL + YR K+
Sbjct: 2 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKE 55
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 2.370e-12 Identity = 58/161 (36.02%), Postives = 74/161 (45.96%), Query Frame = 3
Query: 36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR-----GTCLLRVLHPTQHA-----PRSRRLGCTRGYGLGRGWMVSVTVRLLSLRRT-----TDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLAR 470
W L+ PSK E+T +S+TLESVRKDVECFFG+LKGRFRILKL + YR KK TC +LH H + GL W S+ T +G + T + +LI FS ++ NDI WL+R
Sbjct: 333 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCC--ILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSR 491
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.500e-12 Identity = 56/161 (34.78%), Postives = 73/161 (45.34%), Query Frame = 3
Query: 36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR-----GTCLLRVLHPTQHA-----PRSRRLGCTRGYGLGRGWMVSVTVRLLSLRRT-----TDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLAR 470
W L+ PSK E+T +S+TLESVRKDVECFF +LKGRFRILKL + YR K+ TC +LH H + GL W S+ T +G + T + +LI FS ++ NDI WL+R
Sbjct: 12 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCC--ILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSR 170
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.650e-12 Identity = 59/154 (38.31%), Postives = 73/154 (47.40%), Query Frame = 3
Query: 72 TDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPIYREKKRG------TCLLRVLHPTQHA-------PRSRRLGCTRGYGLGRGWMVSVTVRLLSLRRT--TDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLAR*ALGSS 488
TD E++WSK LESVRKDVE FFG+LKGRFRILKL I + + TC LH HA + G G GL W + ++ T T D G T TT + ++ L+ HF R KNDI WL+ G S
Sbjct: 4 TDMESKWSKALESVRKDVEYFFGILKGRFRILKLGILFQHENVIDNLFFTCC--TLHSMLHAFDGLDELETVKEWGGRAGLGLHGTWDNDPLLDDSTVGSTSPTPADDDGTT---TTPQAAHEELKN-ALMTHFEFRRSKNDIRWLSYATTGKS 151
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 4.120e-12 Identity = 53/155 (34.19%), Postives = 74/155 (47.74%), Query Frame = 3
Query: 36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPIYREKKRG------TCLLRVLHPTQHAPRSR-----RLGCTRGYGLGRGWMVSVTVRLLSLRRTTDG*DSGATLAATTGMKRSQTTRS*KLIAHFSNHRKKNDIMWLA 467
W L+ PSK + + +SK LESVRKDVECFFG++KG FRILKL I K+ TC +LH H+ ++ GL W + ++ L S+ G + ++ TR +LIA F + KNDI WL+
Sbjct: 94 WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCC--ILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSV-----GAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWLS 241
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 3.130e-11 Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 3
Query: 6 SSLQKRMSQDWAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR 197
+S+ S +W +L+ PSK L++ + + K LESVRKDVECFFG+LKGRFRILKL + Y+ ++R
Sbjct: 8 TSIALTASNNWQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQER 72
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 1.220e-10 Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 3
Query: 36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR 197
W +L+ PSK L++++ +SK LESVRKDVECFFG+LKGRFRILKL + Y+ ++R
Sbjct: 182 WQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQER 236
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 2.510e-10 Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query: 33 DWAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPIYREKK 194
+W L+ PSK ++++T +S+ LESVRKDVECFFG+LKGRFRILKL + K+
Sbjct: 93 EWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKR 146
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 3.090e-10 Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 3
Query: 36 WAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLPI-YREKKR 197
W +L+ PSK L++ + +SK LESVRKDVECFFG+LKGRFRILKL + Y+ ++R
Sbjct: 292 WQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQER 346 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12.1278.1 >prot_H-paniculata_contig12.1278.1 ID=prot_H-paniculata_contig12.1278.1|Name=mRNA_H-paniculata_contig12.1278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp MSQDWAVLMLPSKRSLTDEETRWSKTLESVRKDVECFFGVLKGRFRILKLback to top mRNA from alignment at H-paniculata_contig12:68229..69454- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12.1278.1 ID=mRNA_H-paniculata_contig12.1278.1|Name=mRNA_H-paniculata_contig12.1278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-paniculata_contig12:68229..69454- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12:68229..69454- >mRNA_H-paniculata_contig12.1278.1 ID=mRNA_H-paniculata_contig12.1278.1|Name=mRNA_H-paniculata_contig12.1278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig12:68229..69454- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |