mRNA_H-paniculata_contig12.1274.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12.1274.1
Unique NamemRNA_H-paniculata_contig12.1274.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12.1274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12contigH-paniculata_contig12:42471..43294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.490254-CDS-H-paniculata_contig12:42470..426071622928914.490254-CDS-H-paniculata_contig12:42470..42607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 42471..42607 +
1691480665.8094676-CDS-H-paniculata_contig12:42470..426071691480665.8094676-CDS-H-paniculata_contig12:42470..42607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 42471..42607 +
1622928914.504857-CDS-H-paniculata_contig12:42896..432931622928914.504857-CDS-H-paniculata_contig12:42896..43293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 42897..43293 +
1691480665.8182316-CDS-H-paniculata_contig12:42896..432931691480665.8182316-CDS-H-paniculata_contig12:42896..43293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 42897..43293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12.1274.1prot_H-paniculata_contig12.1274.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12 42471..43293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12.1274.1

>prot_H-paniculata_contig12.1274.1 ID=prot_H-paniculata_contig12.1274.1|Name=mRNA_H-paniculata_contig12.1274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
PNPKPGWVQPPVLDMPKRVHNDDEGSRDPPDVIQGRRRATVNPKFRAKKL
LSGAEGTSTPSAFAGITVPPAQSGFVFGTGAAGANASSTPFGGAKINFGK
SLTETTAPAPVGACPPFSFGAPSTQTRAAAPVGSTPAFSFGAPSTGTTAA
APVVSTPAFSFGAPSTGTTAAAPVVSTP
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mRNA from alignment at H-paniculata_contig12:42471..43294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12.1274.1 ID=mRNA_H-paniculata_contig12.1274.1|Name=mRNA_H-paniculata_contig12.1274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=824bp|location=Sequence derived from alignment at H-paniculata_contig12:42471..43294+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAATCCAAAGCCGGGGTGGGTCCAACCCCCTGTACTTGATATGCCAAA
GAGAGTACATAACGATGATGAGGGGTCTAGAGACCCCCCCGATGTCATTC
AAGGAAGACGGCGGGCAACAGTCAATCCAAAATTTAGGTGAGAAAATCGC
GCAGTCTTCGACAATTGGGGTTGCTGTACAAGCATGACTCTTTGAGACGT
TACCGTCTGTGTACCGTCCGTATCGACTGCTGAACGGACTGTCCCGTACT
GTACAAAAGTGACTAGCATTCAAAATTTGCCGTTCGATTATACTCGTATT
GCTCCTCCCAACCCGCAACCGAATATTTCCTCTAACCAGCCCAGCCCGTG
TTACAGATATATCTGACGAATTTGCCTGATTGCAATCAATTACTGTACTG
ATCCTCAACTCTCGCTTCCATCTTAGGGCAAAGAAACTGTTGTCAGGCGC
GGAGGGGACTTCCACACCCTCCGCTTTCGCTGGAATTACAGTCCCACCTG
CGCAATCAGGGTTCGTGTTCGGCACAGGAGCTGCTGGCGCCAATGCCTCG
AGTACGCCGTTTGGCGGCGCAAAGATCAATTTTGGAAAGTCCTTGACTGA
AACCACGGCACCTGCGCCGGTGGGAGCTTGTCCTCCTTTTAGCTTTGGTG
CCCCTTCAACTCAAACCAGAGCAGCTGCACCGGTCGGAAGCACTCCTGCT
TTTAGCTTTGGTGCGCCTTCGACTGGAACCACAGCAGCTGCACCGGTCGT
AAGCACTCCGGCTTTTAGCTTTGGTGCGCCTTCGACTGGAACCACAGCAG
CTGCACCGGTCGTAAGCACTCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12:42471..43294+

>mRNA_H-paniculata_contig12.1274.1 ID=mRNA_H-paniculata_contig12.1274.1|Name=mRNA_H-paniculata_contig12.1274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig12:42471..43294+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAATCCAAAGCCGGGGTGGGTCCAACCCCCTGTACTTGATATGCCAAA
GAGAGTACATAACGATGATGAGGGGTCTAGAGACCCCCCCGATGTCATTC
AAGGAAGACGGCGGGCAACAGTCAATCCAAAATTTAGCCCAATCCAAAGC
CGGGGTGGGTCCAACCCCCTGTACTTGATATGCCAAAGAGAGTACATAAC
GATGATGAGGGGTCTAGAGACCCCCCCGATGTCATTCAAGGAAGACGGCG
GGCAACAGTCAATCCAAAATTTAGGGCAAAGAAACTGTTGTCAGGCGCGG
AGGGGACTTCCACACCCTCCGCTTTCGCTGGAATTACAGTCCCACCTGCG
CAATCAGGGTTCGTGTTCGGCACAGGAGCTGCTGGCGCCAATGCCTCGAG
TACGCCGTTTGGCGGCGCAAAGATCAATTTTGGAAAGTCCTTGACTGAAA
CCACGGCACCTGCGCCGGTGGGAGCTTGTCCTCCTTTTAGCTTTGGTGCC
CCTTCAACTCAAACCAGAGCAGCTGCACCGGTCGGAAGCACTCCTGCTTT
TAGCTTTGGTGCGCCTTCGACTGGAACCACAGCAGCTGCACCGGTCGTAA
GCACTCCGGCTTTTAGCTTTGGTGCGCCTTCGACTGGAACCACAGCAGCT
GCACCGGTCGTAAGCACTCCGGGCAAAGAAACTGTTGTCAGGCGCGGAGG
GGACTTCCACACCCTCCGCTTTCGCTGGAATTACAGTCCCACCTGCGCAA
TCAGGGTTCGTGTTCGGCACAGGAGCTGCTGGCGCCAATGCCTCGAGTAC
GCCGTTTGGCGGCGCAAAGATCAATTTTGGAAAGTCCTTGACTGAAACCA
CGGCACCTGCGCCGGTGGGAGCTTGTCCTCCTTTTAGCTTTGGTGCCCCT
TCAACTCAAACCAGAGCAGCTGCACCGGTCGGAAGCACTCCTGCTTTTAG
CTTTGGTGCGCCTTCGACTGGAACCACAGCAGCTGCACCGGTCGTAAGCA
CTCCGGCTTTTAGCTTTGGTGCGCCTTCGACTGGAACCACAGCAGCTGCA
CCGGTCGTAAGCACTCCG
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