mRNA_H-paniculata_contig12.1269.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12.1269.1
Unique NamemRNA_H-paniculata_contig12.1269.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12.1269.1 vs. uniprot
Match: D7G6B6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6B6_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.440e-42
Identity = 86/170 (50.59%), Postives = 114/170 (67.06%), Query Frame = 3 
Query:  189 TALIHSQDETRSVKNAKNGEIAAMLHKDMMAHRKRTADFNNKWKGTLCLASVALALVSIWKAAENARDGSPQWMERSITSANSVLIGIGV-QVEDRDNTAWFRLSHMVALALSVYQLVDWWTSRQNGEEVDFPVDVILLVVAMAAIVTMTSTLRAADRAYQASGALAQKI 695
            TA    Q E   ++  + GEIA +LH DM AH+K+TADFNN WK  L  AS+ LA VS+ KA E AR+G   W+ER +TSAN+ LIG  V QV+ + + A      + A A+S+YQLV WWTSRQ+   VDFPV VILL+V +A++ +M S L  AD A++AS ALA+K+
Sbjct:   10 TARTKVQTED-GIQRPRPGEIAHLLHMDMAAHQKKTADFNNGWKRALLFASIGLAAVSLLKAVEKAREGDLGWLERGLTSANAGLIGFWVSQVDLQTDKASLLYCKIAAFAVSLYQLVSWWTSRQSEIHVDFPVAVILLIVVVASVASMKSALNEADNAFRASEALAEKV 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12.1269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6B6_ECTSI1.440e-4250.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12contigH-paniculata_contig12:14574..16754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1078
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12.1269.1prot_H-paniculata_contig12.1269.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12 14831..16401 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.8446188-UTR-H-paniculata_contig12:14573..148301622928914.8446188-UTR-H-paniculata_contig12:14573..14830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 14574..14830 +
1691480665.9323967-UTR-H-paniculata_contig12:14573..148301691480665.9323967-UTR-H-paniculata_contig12:14573..14830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 14574..14830 +
1622928914.8898902-UTR-H-paniculata_contig12:16401..167541622928914.8898902-UTR-H-paniculata_contig12:16401..16754Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 16402..16754 +
1691480665.9581013-UTR-H-paniculata_contig12:16401..167541691480665.9581013-UTR-H-paniculata_contig12:16401..16754Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 16402..16754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.8634758-CDS-H-paniculata_contig12:14830..148931622928914.8634758-CDS-H-paniculata_contig12:14830..14893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 14831..14893 +
1691480665.9408832-CDS-H-paniculata_contig12:14830..148931691480665.9408832-CDS-H-paniculata_contig12:14830..14893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 14831..14893 +
1622928914.8747501-CDS-H-paniculata_contig12:15996..164011622928914.8747501-CDS-H-paniculata_contig12:15996..16401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 15997..16401 +
1691480665.9492555-CDS-H-paniculata_contig12:15996..164011691480665.9492555-CDS-H-paniculata_contig12:15996..16401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 15997..16401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12.1269.1

>prot_H-paniculata_contig12.1269.1 ID=prot_H-paniculata_contig12.1269.1|Name=mRNA_H-paniculata_contig12.1269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MLHKDMMAHRKRTADFNNKWKGTLCLASVALALVSIWKAAENARDGSPQW
MERSITSANSVLIGIGVQVEDRDNTAWFRLSHMVALALSVYQLVDWWTSR
QNGEEVDFPVDVILLVVAMAAIVTMTSTLRAADRAYQASGALAQKISAKP
KKNRR*
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mRNA from alignment at H-paniculata_contig12:14574..16754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12.1269.1 ID=mRNA_H-paniculata_contig12.1269.1|Name=mRNA_H-paniculata_contig12.1269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2181bp|location=Sequence derived from alignment at H-paniculata_contig12:14574..16754+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCTGTTGCGCACTCCCTCTGTGTTCTGTGATCTGGGCCACATGTCT
CACATGCCCACGGTCCCATCAGTCTTATAATATTATGTTCAATAGCATAA
CGTTAGATTTAATAGGATTTTCAGATTTTCCAGCTGCTGAGGGATATGAG
CTCGATCTGACATGTAGCCGGCTCATAAACACCTTGTCACTGCCCTCATT
CACTCTCAGGACGAAACTCGCAGCGTTAAGAATGCGAAGAATGGAGAGAT
TGCCGCGATGCTGCACAAGGATATGATGGCTCATCGGAAAAGAACGGCTG
ACTTTAACAACAAGTGGAAGGTAGGTATGATTGGCGTGGATTGGCATCAT
TCTGGTACTGCAGTTTGAACATCTAGCGACTTCATCATATTTCCGCCCTG
CTGGTTGTTTGGTGCATCGCAATCACCCAGTAGGAGTAGCGCGGTGAGGT
TCTGTACTCTAATAACATCGAACATTTGAATATTTTTGATGTTCGAGTAC
AGTATATTCTTGTATGTACATTCTCAGAACATAAGAGTCTAATCGGTCAG
TAGCACTGCTGTGCTCTGATAGCAACGCAAGACAACTGAGTAGGGCAGTG
TATATATTGGGGGTTGTAGTTAGCATTGATTATTGCGAATTAAGTACCTT
AGTATACACAAGACAATACCCAAACCTCAAGACAAAATAAGACAAGATAT
CATCTCCTCAGACCGCTTCTTATGGGGGACTAATTTTTCTGGAGAAAAAG
TCGCTCTGGTGCGACTTCAGGAACACAGAAGTCGCTGAACTGTTGACTGA
AAGGACTGGAGTTTGCGGGAAATTGGGTTGCATATGTTTGTATAGAACAT
CTTGTTCGTCGACTTGTTGCGGCTTCCAAGCAATGCGTTTGCCAATCTCA
GCACTTTTGCCCAGCTGCGTCTGTATATCCAGAGATGGACAAAGACGCAC
CGGAGGGACTGTTGTACAGGGAAAACAGGCCCTCGATAAGAAACGAGATT
TTGTTATGTTCCATATTTGCTGTAAGGAATCTTGTCATGATTTGGGGCTA
AATCTGAAAAACCTTAGCATGACATCTAATGTTGGAAAATATTATGGGTG
TTGGAAAATCATCAGATATGTCGACAACTGTACGGTGGTTATGGGGTTTG
GTCAATTTCACGACTTTCCGATTCATCATCGGGGGGATACCGCCCTGTAA
TGTTGGAAAATGACGCGTAATACCACCTCCCACCCATTTGCTTTGGACGA
TGACGTTTAGTACAATGTCATCTGAATGTATGCACGATTCTTTCAGCGAG
GATAGTGACTGAAAGCGTGCAGATTGCGATTTCCTAGAAAGAAATGATGA
ATCTCATTCGATATGCATCTGACTGAATCTATCATCTCTGCCCCGTGGCT
TTCGATATGCCTGTCCCATACAGGGGACCCTCTGTTTGGCATCCGTGGCG
TTAGCATTGGTGAGCATATGGAAGGCGGCAGAGAACGCAAGAGATGGCAG
TCCTCAATGGATGGAGCGTTCCATCACATCTGCCAATTCCGTGCTCATCG
GCATCGGGGTGCAGGTCGAAGACCGCGACAACACGGCATGGTTTCGTCTA
AGCCATATGGTAGCCCTGGCATTGTCAGTATATCAGCTGGTAGATTGGTG
GACAAGTCGACAAAACGGAGAAGAAGTTGACTTCCCTGTAGACGTAATTC
TCTTGGTGGTAGCAATGGCAGCTATTGTGACCATGACTTCTACTCTACGA
GCGGCGGATCGTGCGTACCAAGCCAGTGGTGCTCTCGCACAGAAGATCTC
GGCGAAACCAAAGAAAAATAGGAGATAACACGGATTTCGTTCTATCTATC
GCATTGACGAGGTATCTCGACCGGGGACCGCTGCGCGTACACAGTGTGGC
TAAAATCTTACAAATATATTTACAGAAGTTTTTCTATTCATTAGCGGTTT
CCGGGGCCATTGGAGGCCACAGTAGCTGTGTCTTGGCCCAGACTTCGCAA
GAAATTTCTGTCGCTCGTATCTCCCTCCCTCATCGACTCGATCTGGACGT
TTTCGTAGAACCTATGATTGAAGCAACGGGGTAGAGGTAATTAATGCTGC
TGTGAGAGCGGTTCTCCTGGTGCATTGACCAAAACCGGCGGCGATGTACG
GCAAGACGTACAGCTTGAATCGAGGATCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12:14574..16754+

>mRNA_H-paniculata_contig12.1269.1 ID=mRNA_H-paniculata_contig12.1269.1|Name=mRNA_H-paniculata_contig12.1269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig12:14574..16754+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCACAAGGATATGATGGCTCATCGGAAAAGAACGGCTGACTTTAA
CAACAAGTGGAAGATGCTGCACAAGGATATGATGGCTCATCGGAAAAGAA
CGGCTGACTTTAACAACAAGTGGAAGGGGACCCTCTGTTTGGCATCCGTG
GCGTTAGCATTGGTGAGCATATGGAAGGCGGCAGAGAACGCAAGAGATGG
CAGTCCTCAATGGATGGAGCGTTCCATCACATCTGCCAATTCCGTGCTCA
TCGGCATCGGGGTGCAGGTCGAAGACCGCGACAACACGGCATGGTTTCGT
CTAAGCCATATGGTAGCCCTGGCATTGTCAGTATATCAGCTGGTAGATTG
GTGGACAAGTCGACAAAACGGAGAAGAAGTTGACTTCCCTGTAGACGTAA
TTCTCTTGGTGGTAGCAATGGCAGCTATTGTGACCATGACTTCTACTCTA
CGAGCGGCGGATCGTGCGTACCAAGCCAGTGGTGCTCTCGCACAGAAGAT
CTCGGCGAAACCAAAGAAAAATAGGAGATAAGGGACCCTCTGTTTGGCAT
CCGTGGCGTTAGCATTGGTGAGCATATGGAAGGCGGCAGAGAACGCAAGA
GATGGCAGTCCTCAATGGATGGAGCGTTCCATCACATCTGCCAATTCCGT
GCTCATCGGCATCGGGGTGCAGGTCGAAGACCGCGACAACACGGCATGGT
TTCGTCTAAGCCATATGGTAGCCCTGGCATTGTCAGTATATCAGCTGGTA
GATTGGTGGACAAGTCGACAAAACGGAGAAGAAGTTGACTTCCCTGTAGA
CGTAATTCTCTTGGTGGTAGCAATGGCAGCTATTGTGACCATGACTTCTA
CTCTACGAGCGGCGGATCGTGCGTACCAAGCCAGTGGTGCTCTCGCACAG
AAGATCTCGGCGAAACCAAAGAAAAATAGGAGATAA
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