mRNA_H-paniculata_contig12.1268.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12.1268.1
Unique NamemRNA_H-paniculata_contig12.1268.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12.1268.1 vs. uniprot
Match: D7G6B5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B5_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.490e-13
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  659 SLGTILLKGLKQMGNKEAEDTLRDRLVAAGAVFKKAYPSRQEIAKARQQANEAKELEGIDMSNVIQGSRRRSRTED 886
            +LG   L+GLKQM  ++AE TLR+RL+++GA FK  +PS +EIA+AR++     +L+G+D+ NV+QGSRRR R+ED
Sbjct:  117 NLGPRPLQGLKQMKRRDAERTLRERLISSGAQFKGLFPSSKEIAQARRRTETKNDLDGMDLGNVVQGSRRRERSED 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12.1268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6B5_ECTSI1.490e-1352.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12contigH-paniculata_contig12:8661..14271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001240.1
Exons3
Model size1139
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12.1268.1prot_H-paniculata_contig12.1268.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12 8740..14150 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.3498027-UTR-H-paniculata_contig12:8660..87391622928914.3498027-UTR-H-paniculata_contig12:8660..8739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 8661..8739 -
1691480665.7669802-UTR-H-paniculata_contig12:8660..87391691480665.7669802-UTR-H-paniculata_contig12:8660..8739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 8661..8739 -
1622928914.4298768-UTR-H-paniculata_contig12:14150..142711622928914.4298768-UTR-H-paniculata_contig12:14150..14271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 14151..14271 -
1691480665.8016996-UTR-H-paniculata_contig12:14150..142711691480665.8016996-UTR-H-paniculata_contig12:14150..14271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 14151..14271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.3626728-CDS-H-paniculata_contig12:8739..90151622928914.3626728-CDS-H-paniculata_contig12:8739..9015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 8740..9015 -
1691480665.7754033-CDS-H-paniculata_contig12:8739..90151691480665.7754033-CDS-H-paniculata_contig12:8739..9015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 8740..9015 -
1622928914.4008114-CDS-H-paniculata_contig12:9141..92591622928914.4008114-CDS-H-paniculata_contig12:9141..9259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 9142..9259 -
1691480665.7829978-CDS-H-paniculata_contig12:9141..92591691480665.7829978-CDS-H-paniculata_contig12:9141..9259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 9142..9259 -
1622928914.4151306-CDS-H-paniculata_contig12:13605..141501622928914.4151306-CDS-H-paniculata_contig12:13605..14150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 13606..14150 -
1691480665.7938116-CDS-H-paniculata_contig12:13605..141501691480665.7938116-CDS-H-paniculata_contig12:13605..14150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 13606..14150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12.1268.1

>prot_H-paniculata_contig12.1268.1 ID=prot_H-paniculata_contig12.1268.1|Name=mRNA_H-paniculata_contig12.1268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
MVLDSNLPEWEWVKATTLEVVKTNSCTLWGEFKREVAKKLDVPVEVLKCY
KSEMQLVIAHADDAENDEAYSDGGSEDQHAGEDSWLEEESADGRDGQEEE
DDDDDKEGEGSDGGDLAESNEDGDADNKKRKRSTNKTTNRQIRRKRAGTE
QQQQLRRHAESHQVESKAMGAFKHMVKAMSLGTILLKGLKQMGNKEAEDT
LRDRLVAAGAVFKKAYPSRQEIAKARQQANEAKELEGIDMSNVIQGSRRR
SRTEDVIPETETAKRRRVENSAKSGLEDGESDGGSFSSERSDADDDIEGD
SESEFEYDSSRS*
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mRNA from alignment at H-paniculata_contig12:8661..14271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12.1268.1 ID=mRNA_H-paniculata_contig12.1268.1|Name=mRNA_H-paniculata_contig12.1268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5611bp|location=Sequence derived from alignment at H-paniculata_contig12:8661..14271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGACGTCATACTCCAAAATCGGTTTGTAGACTGCGGAGCATTTATATCG
ACTTGTGCTTTGTTTGTACAGCGCTGTTGCCGTACACATAGATACAACCC
AACACAGCCACTGAGAACAGCATGGTGCTTGATTCGAATCTTCCTGAGTG
GGAATGGGTAAAAGCGACCACCTTGGAGGTGGTGAAGACGAATTCGTGTA
CTCTATGGGGAGAGTTCAAGCGAGAGGTCGCCAAAAAGTTGGACGTCCCG
GTGGAGGTTCTGAAGTGCTATAAAAGTGAGATGCAACTTGTGATCGCACA
CGCAGATGACGCGGAAAATGATGAAGCTTATTCAGACGGAGGTAGCGAGG
ACCAGCATGCCGGCGAGGATTCGTGGTTGGAAGAGGAGTCTGCAGATGGA
CGAGATGGCCAGGAGGAGGAGGATGATGACGACGACAAAGAGGGGGAGGG
AAGTGATGGAGGTGACTTGGCGGAGTCAAACGAAGACGGAGACGCTGACA
ACAAGAAGAGGAAAAGGAGTACAAATAAAACCACCAACCGTCAAATCCGT
CGGAAGCGCGCGGGTACAGAGCAGCAGCAACAGCTTCGGCGGCACGCAGA
GTCGCACCAAGTCGAGAGCAAGGCGATGGGAGCATTCAAGCACATGGTGA
AGGCTATGAGCCTTGGGTAAGTTCGCGTGGTATTGCGCCAGACATGAGAG
AGAGACCTGGAAATGTCAAATATTGATCCTCTCTCTCACTCCCTAGATTT
CTGTATTTTGAAGTTTTGAGTATCAACTATTTTATCGTTTTTGCTGCAAA
ACCAAATGATTACTTCAGTACTGGTGAGAGAAATGTAATCAACTTCCCCA
AATAAACAGGCATGTCCCATCCATTTTCCCACAGGATATTCACTATCTCT
ACCCCCCACACTTGAAACAACACATCCAGAATTATGCATTCATTACTACT
AGTATATAATATATCCATACGCCACTCTTGCCCTCTAGCCAACCACGCAC
CCGATGCATTTGTGTAAGCCGGGGCCATCGCATCGGAGTCAAAGAGTCTA
CACAGATTATGACAGATGATGATGTACGGGCAAAAGAGGACCAATCTTCG
AGAGTACCTATTTTCTGTCACAAATACATGTCAGTACAGTTTCCTTATCA
GTACAGACGAAGATTGCACCCCCCGGACAAATACGAATGGAGCATTCGCA
ACTATCTCGAAGTATCCTTGTTTGTCTTGAGTAGACACGTATTTATTCGT
GTACAAGTCTATGAATGGTCACTCTACAGATAGTCACCGGGTGGTATTAT
ACCCGGCGAACAGTCACACATGCAAGTCCTATTTGTTTTCCGGATGGTAC
TGTACAGATTGAATACTCGATCTGCCCGAGCTTTCCGATGCTCCATGGTA
TATCGAGTAAAATGCATATTATTCGCGTCACATGGATATCTGCCCCGGCT
CAAACAGATACAGTATTCGTTGCAGATTTCCCGTATTTATTCGCATTTTG
TATTCGTATTTGTCCGGGCCTACAGGACACGTAATTTCTTGGCGCTCGTC
TAGTTTCCTGCTCTTACTTTCAATCAAACAGTCGGCATCTAACCTTTCCA
CGTCCGTCCAGTGCGCGCCTTTAACTTGGGCTGTAGGGGCGTCTGGCGAC
GCGTCTACGTGATACCGAACTTCAGGTTCGTTTTACGGGCTATCCTCTGG
ATGATGACCGCACTCATATCCCCTAGGACTACCCTCGTTTCGCGAGGAGG
CCGTATTTATCGCTTGTATTTCTGTGCCACATGTGGAATTTGATGGCAGA
AAAGTTGTATTAGCTGTCTTCGAAAGTCCCAAAACAATTGAAACGGTCTA
GAAATGAGATTTGATAATTGTGTAATTGAACCTGCGCGGCACCAAAATGA
GTGCACCTTTTTGGACCTAATGTGGAGAGCACGTTCCTGATGTTCCTGCG
ATTCCTTAACCCTGGTCCCCTACGTAACATCCGGAGGATTTTACGCCCAT
TTTCGGACCAGATCTCTAGCTGGCCCGTCTCCCGAGAGATATTCTCACGT
ACGAGAGATCTGTAACGACAGATCATAACGGTGTGTGCTCTACACTGCAT
CCCTGAACCTAGGCCGAAACTAGAGCAGAGCAGCGCGCTCATGGAAGCGG
GTCTACCGTGGGAGTGCCGTGTTCTCACTGATGTTGAAGGAAACAAAAGA
AATGCTCTTGCGCAGGCCTTGAAAATGGCAGGAGGTGGGGAGTAACCCGT
GGTCGGCTCACACTCCCCCGAACATCAGATATGCCAGGACAATCGATGAT
GATCTGCAACAACACAGCAGAAACTGTGTTGACAACGCACAACACCAATG
CAGGATGAAAGGAATTACTGGATTGTACGATATGCACGACAAACACTACA
TTATAATTTGCAACGCTGAATTGGTCGTTTTTAGAGCTGCCATGCTGTCT
GCTGGATTCGTAGACCCCTGTCGCCACGAGTAAACGCACCACTGTGGAAC
AAGCCGTTTCACTACACTCATCCATTGTGTATTTGGTTGTTCTAATAGTT
GTTGTTGCGCTACGATTTCGGTGCCATTACAGCTACTACGGAGGCTCATT
GTTATTGGGAGTGAATTTCATGTCTTTTTTCGTTGAAGGAAATTGAAGAA
AACGCGAAAAATTGTTTTTCACCTTCACTTTTTTTCAATTTTCAATTTTT
GGCCGAAGCCATGTGCAGACGAACACAAGGGACATACATCACAGAGGGTC
ATGGCGGAGTTGATAGTATCAAACGAAAGGCGATGATTGTAGTTTTCAGA
TGGTGTCGGTCTCATGGTGGGCAACAAAAATCAGCGCGCAGCAGCGGAGG
ACACAAACGAGCACTTCATAAACACACTCATTTTTTGGCGGGGGGGGGGA
GTTATCACCTATTTATGCGAACCATTATAAGAACTAATTCCAGGAGAAAG
GTGAGAACCCAAAAAACAATATGCACCAACCAGATTTTCAATATTCGAAG
TAATTTTTGTGGTACACCCGTTTCTGTAAGGGCACCCCATCCCGAGCTGA
GCCTGCACGGGAACCATGGCTCAAAACAAGAGCAATGCCAGAGCCGATCC
GCGGGATTCTCGAAGCGCAGAACGAGCGCCAAGGGCAAGCTCCTCATCAG
CAGAGATCGCTGTTGGACGAGTCACAGTCCCGAGACATCCTGTTGGGTTA
CTTCAATCTCATCCAGTCGGGCATGGGCCGAGACCCAGCCGGCAAGAAGG
CTGCAAGGGTGATGCGCATTGGTCCGAAGAAGGTGTTTGAGGTAAGGATT
GGGATATCTTATAATATGAATGTAAGATACATGTGGAGTGGTACTGTACA
GGCAGTACTATATACTGTCTGTATTGTACAGAGGTGTGGGTGTAGTCTCC
GATGAAGCAGTGTACTGTACTGTCTGTAAAGACCGTAAAGACCGTACAGA
CCGTGCACTACAGACCGTACACTACACTGCGCTGCCTGTTGCCTTCTGTG
AAGTACTGTCTTTTGTCTCTTGTTGTATATTGTGTTGCTACTGTATTCGA
GATCTTGAAGATATGTCGGCACGTCCACCGTGTTTACTTTCCACCCTTTC
TGTTGAAGAATCTTGGCTGCTTGTACTGCTGCATGTACGCCGAACAACGG
TGTCGGTGTTGTTCTCCCTGTGGATTGACAGCGCTGGCTATTGATACTGA
CTATACCTCCAAAGTGCTGACTGTTTAAAACCATCCGGAGGTTATCTGTA
CCTTGACTTGCTCGAGTTTCCGTGCTCTCTGCAGAGCGAGAGTGGTCCTG
TTTTGTGTTGACCTCACCTTGAAAATTGTCGACCCTTGTCATAAAATAGA
ATAAAAAAGATCAGCGCTTTTCAACTTGTTAGTGTGTTGTATGCCACCGT
GCCACCTGTGTTTTGGGATAATCACGGTTGCACTTGCCACTTGCGCGGTG
AACAGATTCGTACTTGACGGGAGGACAAGAAGGAGCTCATGACAACGTCG
GGGGAAGGACGAGGCGCGACCAAAGGAGCTGATGGGCGGAGATCCTCACC
GTCCCCAAGTAGCCGAGCTTCGTGCCTAACCCTAACCCTAATCATTTTCG
GCGGCTTGTTTCTCCATTTATTCCACTCCGTCTGTTGCTCCAAAGCTCCA
CAATACCAAGCTTGTCTGCGATCGACATTTTTAACAAGCGTTGGTCTAAG
GTTAAGGGCGACAATCTTGGAAAATATGGCGCATCTTAAAGTGAACACTT
GAAAATATATATCGTTTCTTTTGGTACGTGACTGCATCATCTGTGCGATT
TATTCCAACCGTTGTCGAAAACCTCAAGTAAAGGGCAAGCTACGGTGAAT
TTTCCAAATATTTTCCCACCAGCGCCGGCGAAGTTTAACGGCGACAATCT
TGGAAAATGTGGCGTAGCTCGATGTTAACATTAAAATATTTATTTTCCCT
CTTGTTACGTGACCGCCCCGACAGTGCGGTTTATTCCAACCGTTGCCGAA
AACCTCAAGTAAAACGGCGAGCTACGATGAAATTTCCAAATACTTTTCCG
CCAGCGCCGGGGTAAGGTCAACGGCGACAATCTTGGAAAATGTGGCGTAC
CTTAATGTGAACGTTTTCGTTTTTTATGGTAATTTTTATCCGTGACCATA
TCGATGGTGTTGTTTATTCAAGCCATAATTTGTGGAAAATGGCATAAAAA
TGGGCGCGCTACCGTCAAATTTCCAGCATTTTTGCTTACGAGCCCCAGGT
AAAGGCTAGCGGCAAAGATGGTGAACACTACGGCATAACACAAGGAATAT
ATATATATATATATATATATATTATCGTGACCCAGTTTTTCATGTGATTG
GTGTGCGCGATTAATCTTCACATTTTAGTTATTATTGTTGTAGATATGGC
CGAGGTACCAATGGCAATGAGTCTCCGTTAATCGCTAGCTCACTAAGTGA
TTGTCTCATCCGGGACGGTGTGTGTCTTGTTTCGTGTTGCCGGATCCTGT
TGCCTCATGCAGAACTATACTATTGAAAGGACTCAAGCAAATGGGCAACA
AGGAGGCGGAAGATACCTTGAGGGACCGTCTGGTCGCCGCCGGCGCAGTC
TTCAAGAAGGCCTATCCTTCCCGCCAAGAGGTGAGTGAACAGTCAACATA
TGATGTTGACGCGTCACACATTGTCTCCATTGGCTGGTGACATGTTGTTT
TGTTCCTTCTCAACACAATTGTTCAAAGTTTTCGCTGCGCGCGCGTGAAC
GGCCAGATTGCAAAGGCGCGACAGCAAGCAAACGAAGCAAAAGAACTAGA
AGGAATCGACATGAGTAACGTCATCCAGGGATCAAGAAGACGGAGTCGGA
CGGAAGACGTCATTCCAGAGACGGAGACAGCAAAGCGACGTCGGGTCGAG
AATTCCGCTAAGAGCGGTTTAGAAGACGGTGAAAGCGATGGTGGTAGCTT
TTCCTCTGAACGAAGCGATGCAGATGATGACATTGAAGGCGACAGCGAGT
CTGAATTCGAGTATGACTCTTCTAGATCTTGAAAGGCACGACAAATTGTA
TTGAAAAAATGAGAGTGAACAAACAGATACTACAACGTATGGGACACAGG
TAGGAGACGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig12:8661..14271-

>mRNA_H-paniculata_contig12.1268.1 ID=mRNA_H-paniculata_contig12.1268.1|Name=mRNA_H-paniculata_contig12.1268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig12:8661..14271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTTGATTCGAATCTTCCTGAGTGGGAATGGGTAAAAGCGACCAC
CTTGGAGGTGGTGAAGACGAATTCGTGTACTCTATGGGGAGAGTTCAAGC
GAGAGGTCGCCAAAAAGTTGGACGTCCCGGTGGAGGTTCTGAAGTGCTAT
AAAAGTGAGATGCAACTTGTGATCGCACACGCAGATGACGCGGAAAATGA
TGAAGCTTATTCAGACGGAGGTAGCGAGGACCAGCATGCCGGCGAGGATT
CGTGGTTGGAAGAGGAGTCTGCAGATGGACGAGATGGCCAGGAGGAGGAG
GATGATGACGACGACAAAGAGGGGGAGGGAAGTGATGGAGGTGACTTGGC
GGAGTCAAACGAAGACGGAGACGCTGACAACAAGAAGAGGAAAAGGAGTA
CAAATAAAACCACCAACCGTCAAATCCGTCGGAAGCGCGCGGGTACAGAG
CAGCAGCAACAGCTTCGGCGGCACGCAGAGTCGCACCAAGTCGAGAGCAA
GGCGATGGGAGCATTCAAGCACATGGTGAAGGCTATGAGCCTTGGATGGT
GCTTGATTCGAATCTTCCTGAGTGGGAATGGGTAAAAGCGACCACCTTGG
AGGTGGTGAAGACGAATTCGTGTACTCTATGGGGAGAGTTCAAGCGAGAG
GTCGCCAAAAAGTTGGACGTCCCGGTGGAGGTTCTGAAGTGCTATAAAAG
TGAGATGCAACTTGTGATCGCACACGCAGATGACGCGGAAAATGATGAAG
CTTATTCAGACGGAGGTAGCGAGGACCAGCATGCCGGCGAGGATTCGTGG
TTGGAAGAGGAGTCTGCAGATGGACGAGATGGCCAGGAGGAGGAGGATGA
TGACGACGACAAAGAGGGGGAGGGAAGTGATGGAGGTGACTTGGCGGAGT
CAAACGAAGACGGAGACGCTGACAACAAGAAGAGGAAAAGGAGTACAAAT
AAAACCACCAACCGTCAAATCCGTCGGAAGCGCGCGGGTACAGAGCAGCA
GCAACAGCTTCGGCGGCACGCAGAGTCGCACCAAGTCGAGAGCAAGGCGA
TGGGAGCATTCAAGCACATGGTGAAGGCTATGAGCCTTGGAACTATACTA
TTGAAAGGACTCAAGCAAATGGGCAACAAGGAGGCGGAAGATACCTTGAG
GGACCGTCTGGTCGCCGCCGGCGCAGTCTTCAAGAAGGCCTATCCTTCCC
GCCAAGAGAACTATACTATTGAAAGGACTCAAGCAAATGGGCAACAAGGA
GGCGGAAGATACCTTGAGGGACCGTCTGGTCGCCGCCGGCGCAGTCTTCA
AGAAGGCCTATCCTTCCCGCCAAGAGATTGCAAAGGCGCGACAGCAAGCA
AACGAAGCAAAAGAACTAGAAGGAATCGACATGAGTAACGTCATCCAGGG
ATCAAGAAGACGGAGTCGGACGGAAGACGTCATTCCAGAGACGGAGACAG
CAAAGCGACGTCGGGTCGAGAATTCCGCTAAGAGCGGTTTAGAAGACGGT
GAAAGCGATGGTGGTAGCTTTTCCTCTGAACGAAGCGATGCAGATGATGA
CATTGAAGGCGACAGCGAGTCTGAATTCGAGTATGACTCTTCTAGATCTT
GAATTGCAAAGGCGCGACAGCAAGCAAACGAAGCAAAAGAACTAGAAGGA
ATCGACATGAGTAACGTCATCCAGGGATCAAGAAGACGGAGTCGGACGGA
AGACGTCATTCCAGAGACGGAGACAGCAAAGCGACGTCGGGTCGAGAATT
CCGCTAAGAGCGGTTTAGAAGACGGTGAAAGCGATGGTGGTAGCTTTTCC
TCTGAACGAAGCGATGCAGATGATGACATTGAAGGCGACAGCGAGTCTGA
ATTCGAGTATGACTCTTCTAGATCTTGA
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