mRNA_H-paniculata_contig11995.1264.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11995.1264.1
Unique NamemRNA_H-paniculata_contig11995.1264.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: D8LSX2_ECTSI (Similar to intersectin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX2_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 3.700e-98
Identity = 195/372 (52.42%), Postives = 232/372 (62.37%), Query Frame = 3 
Query:  315 PIFRPIIPVGRG-LGVVGAVATGAVIAATL-PPPRRRYPSPRPGYIYVVH-------GNEPPRAVAVQETPFIVQRIDVPSYAQGTQGEVLYHVQVTMNDGYKYVVARRYSQFDQLRARVGPLLRAVSPPFPPKRGVRSAMLGLGQEGIEERRTMLMAWLQSLITAATTGSPALRLPMYDFLETTTFYPPEPEDAAGSGSERTTSATAIASPAAPGAAGIQGFPVATA-----TPYVETVGGAFPATAPPDAATTKISYNPGGDGWLVPIPSRETSDVKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAAGEKPPGVLPPDFIPPSKRNAVPTKSANPF 1388
            P+F P    G G LG+VGA+ATGA IAA +             GYIYVV        G+ PPRAV   ETPFI+ R+ + SY  G  GEVL+ VQ+TMNDGYKY V RRYSQFDQLR RV  ++R  +PPFPPK  +RS+ +GLG   +EERR ML AWLQSL TAA+  +PALR+P+YDFLET  +YPPE    +   +  +   TA+A+PAA  A    G PVA A      P   T G   P+  P         Y     GW VP  SR+ SD+KMAMAGP  +GKLT    A  L+TGTGA  EDLR VW LSDID+DG LDR+EFA+AWYLA +AAAG KPP  LP D +PPSKR A     ANPF
Sbjct:   36 PLFGP----GPGPLGLVGALATGAAIAAVVGXXXXXXXXXXXAGYIYVVQEPQSGQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAASANTPALRVPLYDFLETAMYYPPEAPVTSSDPTAASAQHTAVATPAATTAT--TGVPVAAAYAEALPPAAGTKGVGVPSAGPLPPKPDSTGY-----GWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 396
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: A0A6H5JHJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ6_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.440e-54
Identity = 117/223 (52.47%), Postives = 140/223 (62.78%), Query Frame = 3 
Query:  750 MLMAWLQSLITAATTGSPALRLPMYDFLETTTFYPPEPEDAAGSGSERTTSATAIASPAAPGAAGIQGFPVATATPYVETVGGAFPATAPPDAATTKISYNPGG----------DGWLVPIPSRETSDVKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAAGEKPPGVLPPDFIPPSKRNAVPTKSANPF 1388
            ML AWLQSL TAA+T +PALR+P+YDFLET ++YPPE    +   +  +   TA+A+PAA  A    G PVA A  Y E +        PP A T  +  +  G          DGW VP  SR+ SD+KMAMAGP  +GKLT    A  L+TGTGA  EDLR VW LSDID+DG LDR+EFA+AWYLA +AAAG KPP  LP D +PPSKR A     ANPF
Sbjct:    1 MLQAWLQSLCTAASTNTPALRVPLYDFLETASYYPPEAPVTSSDPTTASAQHTAVATPAATTAT--TGVPVAAA--YAEAL--------PPAAGTKGVGVSSAGPPPPKPDSAEDGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAWYLAHQAAAGNKPPASLPADIVPPSKRQAAQHSLANPF 211
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: A0A6H5JJX9_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX9_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.600e-32
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 3 
Query:  414 RRYPSPRPGYIYVVHGNEP------PRAVAVQETPFIVQRIDVPSYAQGTQGEVLYHVQVTMNDGYKYVVARRYSQFDQLRARVGPLLRAVSPPFPPKRGVRSAMLGLGQEGIEERR 746
            +RYP P  GYIYVV   +P      PRAV   ETPFI+ R+ + SY  G  GEVL+ VQVTMNDGYKY V RRYSQFDQLR RV  ++R  +PPFPPK  +RS+ +GLG   +EERR
Sbjct:    2 QRYPPPPAGYIYVVQEPQPGQVHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKCSIRSSTVGLGPADLEERR 118
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: A0A2D4BWP8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWP8_PYTIN)

HSP 1 Score: 79.3 bits (194), Expect = 2.460e-11
Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 3 
Query: 1026 AATTKISYNPGGD---GWLVPIPSRETSDVKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAAGEKPPGVLPPDFIPPSK---RNAVPTKSA 1379
            AA +  S NP  D   GW +    R+  D        DT+GK T A     L+ GTG   + L+TVW+L+D+D+DG LD +EFA+A YL  KA  GE  P  LPP  +PPSK   R A PT SA
Sbjct:  452 AAWSTGSSNPFADEEFGWEI-ASVRDQYDALFKTLRHDTNGKATGATCMAPLQ-GTGCPKDVLKTVWDLADVDKDGCLDVDEFAVAMYLCGKAKQGESLPTELPPSLLPPSKAALRMASPTASA 573
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: A0A7S2SL29_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SL29_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.200e-10
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 3 
Query: 1068 WLVPIPSRETSDVKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAAGEKPPGVLPPDFIPPSKR 1355
            WLV  P +   D      GP    KL+ A V + L T TG   E LR+VWEL+DID DGKLDR+EFA+A +L  +A AG   P  LP + +PP KR
Sbjct:  196 WLVQ-PFKPEFDAYFNSQGP-VHNKLSPAQVRDALMT-TGLPRETLRSVWELADIDRDGKLDRDEFAVAMFLCRQAQAGSALPASLPVEVVPPGKR 288
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: A0A7S2F4E5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4E5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.090e-10
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 3 
Query: 1002 FPATAPPDAATTKISYNPGGDGWLVPIPSRETSDVKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAAGEKPPGVLPPDFIPPSKRNAVPTKSANPF 1388
            +P    P A+     +    + W V     E + V  +  GP  +GKL+ A V E L   TG +   LR +WELSDID+DG+LD +EFA+A YL  +A  G+  P  LP   +PPSK++ +     NPF
Sbjct:  111 YPVAKTPVASAAN-PFGASTEEWAVAPYQAEFNQVFYSK-GPS-NGKLSPAQVREALM-ATGVAQGVLRCIWELSDIDKDGQLDMDEFAVAMYLCRQAQRGQPMPQALPSQVVPPSKKSYI---VGNPF 232
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: A8WGZ1_XENTR (LOC100127728 protein (Fragment) n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A8WGZ1_XENTR)

HSP 1 Score: 73.9 bits (180), Expect = 1.420e-9
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 3 
Query: 1068 WLVPIPSRETSDVKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAAGEKPPGVLPPDFIPPSKRNAVPTKSANPF*SSTSRLYHKL 1421
            W VP  SR     K        +G LT + V   L   + + T+ L T+W L+DID+DGKL  +EF LA YL + A AG+  P  LPPD +PP+ R+ V   +++P  + T  LYH++
Sbjct:  245 WAVPQASRLKYRQKFNSLDKCMTGYLTGSQVKNALVQSSLSHTQ-LATIWNLADIDKDGKLKADEFILAMYLTDMAKAGQPLPLTLPPDLVPPAFRSNVSITASDPI-NGTLPLYHQM 360
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: A0A8J5XXQ9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XXQ9_DIALT)

HSP 1 Score: 72.8 bits (177), Expect = 2.890e-9
Identity = 51/119 (42.86%), Postives = 63/119 (52.94%), Query Frame = 3 
Query: 1008 ATAPPDAATTKISY-NPGGDG--WLVPIPSRETSDVKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAAGEKPPGVLPPDFIPPSKR 1355
            ATA P  A T  S  NP GD   W V    R   D   A   P   GK+  AAV  VL+       + LR VW+LSD+D+DG+LD +EFALA +L      G+  P  LP + +PPSKR
Sbjct:  488 ATADPWGAPTVASTPNPFGDDLVWAVSSSERVKYDEVFATLSPS-GGKVGGAAVRPVLERS-NLPVDALRRVWQLSDVDKDGQLDADEFALAMHLVRLQVGGKPLPATLPAEMVPPSKR 604
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: A0A7S3URG0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URG0_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 3.690e-9
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = 3 
Query: 1137 GKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAA--GEKPPGV-LPPDFIPPSKRN--AVPTKSANPF 1388
            G+L   AV E+L   TGA  + L  VWELSD+D DG LDREEFA+A YLA + AA  G  P G  LP   +PPS+R   A    + NPF
Sbjct:   38 GRLDPHAVRELLL-ATGADAQALAQVWELSDLDRDGALDREEFAVAHYLAAEVAAKGGALPAGPSLPAALVPPSRRGRPAASASANNPF 125
[Close]
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Match: Q6GMD0_XENLA (LOC443694 protein (Fragment) n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q6GMD0_XENLA)

HSP 1 Score: 72.8 bits (177), Expect = 4.180e-9
Identity = 48/135 (35.56%), Postives = 73/135 (54.07%), Query Frame = 3 
Query: 1026 AATTKISYNP---GGDGWLVPIPSRETSDVKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLDREEFALAWYLAEKAAAGEKPPGVLPPDFIPPSKRNAVPTKSANPF*SSTSRLYHKL 1421
            ++TT ++ N        W VP  SR     K        SG LT + V   L   + + T+ L T+W L+DID+DGKL  +EF LA YL + A +G+  P  LPP+ +PPS R +V   +++P  + T  LY+++
Sbjct:  216 SSTTSLTGNSPKASNQDWAVPQTSRLKYRQKFNNLDKAMSGYLTGSQVKNALVQSSLSHTQ-LATIWNLADIDKDGKLKPDEFVLAMYLTDMAKSGQPLPLTLPPELVPPSFRGSVNITASDPI-NGTLPLYNRM 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11995.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSX2_ECTSI3.700e-9852.42Similar to intersectin 2 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JHJ6_9PHAE1.440e-5452.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJX9_9PHAE3.600e-3258.12PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A2D4BWP8_PYTIN2.460e-1144.35Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2SL29_9STRA2.200e-1047.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2F4E5_9STRA7.090e-1037.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A8WGZ1_XENTR1.420e-938.98LOC100127728 protein (Fragment) n=1 Tax=Xenopus tr... [more]
A0A8J5XXQ9_DIALT2.890e-942.86Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S3URG0_HETAK3.690e-950.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
Q6GMD0_XENLA4.180e-935.56LOC443694 protein (Fragment) n=1 Tax=Xenopus laevi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11995contigH-paniculata_contig11995:674..7908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue6.8e-90
Seed eggNOG ortholog2880.D8LSX2
KEGG koko:K12472
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endocytosis
EggNOG OGsKOG0998@1,KOG0998@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons4
Model size3634
Cds size1188
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11995.1264.1prot_H-paniculata_contig11995.1264.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11995 877..5665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.882281-UTR-H-paniculata_contig11995:673..8761622928913.882281-UTR-H-paniculata_contig11995:673..876Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11995 674..876 +
1691480665.5483882-UTR-H-paniculata_contig11995:673..8761691480665.5483882-UTR-H-paniculata_contig11995:673..876Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11995 674..876 +
1622928913.9758132-UTR-H-paniculata_contig11995:5665..79081622928913.9758132-UTR-H-paniculata_contig11995:5665..7908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11995 5666..7908 +
1691480665.6073048-UTR-H-paniculata_contig11995:5665..79081691480665.6073048-UTR-H-paniculata_contig11995:5665..7908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11995 5666..7908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.8967288-CDS-H-paniculata_contig11995:876..12451622928913.8967288-CDS-H-paniculata_contig11995:876..1245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11995 877..1245 +
1691480665.5622468-CDS-H-paniculata_contig11995:876..12451691480665.5622468-CDS-H-paniculata_contig11995:876..1245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11995 877..1245 +
1622928913.9161003-CDS-H-paniculata_contig11995:3946..41191622928913.9161003-CDS-H-paniculata_contig11995:3946..4119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11995 3947..4119 +
1691480665.5809166-CDS-H-paniculata_contig11995:3946..41191691480665.5809166-CDS-H-paniculata_contig11995:3946..4119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11995 3947..4119 +
1622928913.933913-CDS-H-paniculata_contig11995:4688..52051622928913.933913-CDS-H-paniculata_contig11995:4688..5205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11995 4689..5205 +
1691480665.5890853-CDS-H-paniculata_contig11995:4688..52051691480665.5890853-CDS-H-paniculata_contig11995:4688..5205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11995 4689..5205 +
1622928913.948523-CDS-H-paniculata_contig11995:5536..56651622928913.948523-CDS-H-paniculata_contig11995:5536..5665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11995 5537..5665 +
1691480665.5984337-CDS-H-paniculata_contig11995:5536..56651691480665.5984337-CDS-H-paniculata_contig11995:5536..5665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11995 5537..5665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11995.1264.1

>prot_H-paniculata_contig11995.1264.1 ID=prot_H-paniculata_contig11995.1264.1|Name=mRNA_H-paniculata_contig11995.1264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=396bp
MPGPGRGGHHHGHHHGHHHGGRGAGWRPRPGPLLPIRPIFRPIIPVGRGL
GVVGAVATGAVIAATLPPPRRRYPSPRPGYIYVVHGNEPPRAVAVQETPF
IVQRIDVPSYAQGTQGEVLYHVQVTMNDGYKYVVARRYSQFDQLRARVGP
LLRAVSPPFPPKRGVRSAMLGLGQEGIEERRTMLMAWLQSLITAATTGSP
ALRLPMYDFLETTTFYPPEPEDAAGSGSERTTSATAIASPAAPGAAGIQG
FPVATATPYVETVGGAFPATAPPDAATTKISYNPGGDGWLVPIPSRETSD
VKMAMAGPDTSGKLTAAAVAEVLKTGTGASTEDLRTVWELSDIDEDGKLD
REEFALAWYLAEKAAAGEKPPGVLPPDFIPPSKRNAVPTKSANPF*
back to top

mRNA from alignment at H-paniculata_contig11995:674..7908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11995.1264.1 ID=mRNA_H-paniculata_contig11995.1264.1|Name=mRNA_H-paniculata_contig11995.1264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7235bp|location=Sequence derived from alignment at H-paniculata_contig11995:674..7908+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACCACACTGCACAGTTCGAGAGAGACTGATCAGCGTCAACTGTCAATT
ACAGCAATCACATCCTTGTCACTGACCGCTACTGGTGTTATCTGCCATTT
TCAGGGATTTGCAGTGTCCCCAACTAATCATTGACCACGTGTGAGCAAGC
ACGCTGTAGCTGAGTAGCTGAGGGTGCCTCCGCTTTTGAGGTTGACAGAA
CGAATGCCTGGACCGGGACGGGGTGGCCATCACCATGGCCACCACCACGG
CCACCACCACGGTGGCAGAGGCGCCGGCTGGAGGCCACGTCCGGGTCCCC
TTCTTCCAATACGCCCTATTTTCCGGCCCATTATCCCCGTTGGGCGAGGG
CTAGGCGTCGTAGGAGCCGTTGCAACCGGTGCTGTGATTGCTGCTACCTT
GCCACCTCCGCGGAGACGGTATCCGTCGCCGAGACCTGGGTATATCTATG
TTGTACATGGTAACGAACCTCCGCGCGCGGTGGCGGTGCAAGAGACGCCA
TTCATTGTCCAGAGGATTGACGTGCCGTCGTACGCTCAGGGAACTCAGGG
AGAGGTTTTATACCATGTGCAGGTGGGTGAGTACTGAAATTGGCACATCT
CGAGTCGTCCACTGGCTTCATGTATATCTCTAATAGGTATTATGGTTTCA
GATAAGCTTGCTGCTTCTTCTCTTGTACAAATAATGTAATTACTGTATTG
GGTGAAAATTCCCAACGTTGTGAGGAAAATTGTCGTTTCGAAACATGATG
TATGTAACATAAGCGTGCAGTGCAGCGATGAAGGCCCAGATCGGCTCCCC
TGTCAGAGACTCGGACTCCTGACATTTACAGGTTCAACACTGTACCAAAG
CAGGTATCCAGAGCGTAGTAATCACAAGACGACCCCCCAAAAACGGCAGA
CTCTCTGATTTTCTGTCGAAAGCATTATCTTCGACCTGCTGGGAAGAAAT
CGGCGGCCAACATCAATCCACCGACCCCACCGAGATATTTGTTTTCTTGG
GTATTATTTTGTCCTCAAAGAAAAGCAGTTCAAAAGAATAAGCGATAATA
TAGTAGAAGTAATTCCCCATTTTTTTGCACCTGCTGCGCGGCCTATGTTT
TTTGGCATCGCTGGGAGGGGTTCGAAGAGCAGTTGACCGTGGTGGTGGAG
GGAGGGACGCGGATGCACCCCACTCGGCTAATCTCTACTCTATACAGATC
AACCTTTACGATGTATTGTACTCCAACCACCGAAAATATAAAACGTTCCT
GTTCGCTAGGCTTTCTCTCCAATTATGAAATTATCATGTGACGGGTGGGG
GCTGCATCAAGTTTATCTGCTGATGAGAGTAGAGAATGATCTCTCCAACG
AAATGATTATCCTTATTTTTTTGTGATTTCGAAGCTGAATGCATGTCTTT
TTTTCGCCGTTAAGTTGTTGTGGTGCGTTGAAAAGACGAGACTAAAAAGC
ACAATTCGAAATATCCTGATGACTCTACAGTGTTTGCCAGAGCCTCGTCA
CTGCTTATGTCCATTCCGGCCGTTGGTTGGATCAGCGCACGTTTCCGCAC
GTCTACAAATATGCTTCAAAAATGGGGCCTCCTTTCAACAGCCAACATTC
CAGATTTGCGATATATACCCTCTTAGCTCCACCTATTTATTCAAAATTCA
TATCTTGGGCACAACGGTTTGTTGTACTCGCAGTTGCCCACCACGCTCGC
ATTAAAGCCCGATGTCCATCATCACAACTTGAGCAGAGGGTTGAAAAATT
GCTGCGAAGTGTCCATCAAGACCTTCTTGCACGAAGTAATGCGTTATTGA
TGTACACATCTGAATCATGTATGTATGACTACCCTTCTCTGTAAAATGTT
GAGATATGCAGTCAGTGAGACCATATTAGTAGGTCAGGGGGGGGGGGTAA
CTCCACATAGGGAAGTCGGGTACGGTTTAAATCGCGAAGAAAGCACTTCA
GCCACAACCCATGCTTATGCATGACCGGAAATGCCGGTGGCGACAGACAC
TACATGAGAAATCACCTGTTGAGAAACTGAGGCTCGTTTTTTTTTTTAAT
TTGAAGAAATTCATACTCAAAATTTGTGCTCAGATCAAGACGACAAAAAG
GATTAGAATCGAGAGATGCAGGAGGGTTGGCAAATAAGAAATCTGCCATG
TACACCGCAGTCCAGGGCAATAAGAAACTTCTCCCACACCCACCCCCGTC
GACGCATCCACCATACTTGTACCTGTTTCATATATTCCCCCCCCCCCCCG
CGCGGGAAGAAGTATCTGCCGGTAAGTACACTACTGTTCAATATGTTTTT
ACGGTATGCCACAAGGCCTGCTGTAGGTGATTTGCCTAAGCAACGCTGGA
GAAAAAACAAAACGAAACAATGTATATTTTACTGCGCTGTACCGCATCCG
TTCGCAGAATCAGAAATTGTTGTAAGAAATTCATCGTTGTACACATTCAG
AAAATAAGAAATTGACTTTAAGAAATTATGCTCTGCTCGGACATGAAATA
AGCCACGAGCCTCGCCCCAAATGAGAGTTTCTTGTAGTGTCCCCACATGT
AGCAAAGAGAAACCGGCTGCGAGCTAGTTTCACGCTGCAAAACTCCCTGT
TACATATCGAAAACCTTTGAAAAAACGACCACCAGCCGGTTGGATTTCAC
GGGTCGTGCCTCACCTCTCAAGCGTCAAGGACCGTATCGGAACAACTTCA
AGTTGCCAATCCCATAGGCGCGGAGGTGCGTGGGGATTATTTTTCAGACG
GGGTCAATAGTTATAGACAGGGCGTGCTTCCAGGATGTTGAATCGTCAGG
GGGCTACCCTCCATTCCTCAGGTAGGGCAAATTGTAGCTGCCAAAAAATA
ATACTCCACTGCGACATCTCATATTGGATATATTTCCTACGTGTGTTCCA
AAACACACTGTAGGCCATGTTCCCCATGACAACAGCCATGTTCTCACGGA
AGCACTGCTGCAGTCCTGTTGCTACTGTACGCTCTGTGTCGTTGTCCCTC
CGATTCGACTCGAGGACTACTTCTCGCGGCTGTTCGTATTGCTCCACGCC
GTGCGTTGGGAAACGGCCTGTTGGAGGATGAGGGAGAACCTAGACCTGAG
TTGGCCAGTTGTCTTACGGGTTAATTCATGTCGTGTTTGCACTTATAAAC
CGTTGTCCACCGATTTCTACCGCCAGGCCGTTCCACCAATCACCCAACCT
GCCGCTATTCCTGTGTGCTCAAGTCATTCTCAATCGACCTTCTCTGTTAT
TTATGTTTTGGTTTGAATGGCAGGTGACAATGAACGATGGTTACAAGTAC
GTCGTTGCTAGGCGTTACTCGCAGTTTGACCAGCTCCGGGCGCGCGTCGG
CCCGCTCCTTCGTGCAGTCAGCCCGCCCTTCCCGCCCAAACGCGGCGTAC
GGAGTGCCATGTTGGGATTAGGCCAGGAAGGCATCGAAGAGCGTAGGTGA
GAGAGTGGAGGATTTACAGACTAACATTCGATGGTGGCTTGAGGTGGTTA
TATCGTTGATTGTGGACAAGAGGCCCAGTCCGCCAAAGTGACTCAAAATA
GCGTAGGCGCACACAGGTAGAGGTGGTGTTCGTTGTGAAATTTAGAGGGA
TTTTTACTCTACGACACTCTTCAACAATGTGTTATAACACTGCCCGCCTC
TCATCGTACGCCAAGAGTAGACATGCTTGGTTATTGTGGGGGTTCATATT
TTACTTCGGCCTCGGTCGCATGAGCATGGCTTGTCACAAGTCGCCCTGGA
AAACATCATATTTCTTAATCGGAACATGTCGAATCGTAATCGATCCTTAT
ATAGAGGGCTATTCCCCGTGACAAAGCGCAGCTGAAATGGCAAGAGCGCG
ATGACGGTTGCGCAGCGAAATCAAAATAAAACTAATATGAATACCTCCTT
CATCGCATTTCCTCGTCTTACACCGTTTCCTCCTTCCCAACAAGCCTAAC
CGTGTACTCTGAACCCCCCCCGCATTTCCTTCCCCATAACGTATGCTCTA
TCGTCATACGAACAGAACCATGCTCATGGCGTGGCTCCAGTCCCTCATAA
CGGCGGCCACAACGGGCTCTCCAGCCCTGCGTCTTCCCATGTATGACTTC
CTCGAAACCACTACCTTTTACCCGCCGGAGCCGGAAGATGCCGCAGGCTC
TGGATCAGAGCGCACTACCTCCGCCACTGCAATCGCATCCCCTGCCGCTC
CAGGAGCGGCCGGTATCCAAGGCTTCCCTGTCGCAACGGCTACTCCTTAC
GTTGAGACGGTGGGTGGTGCATTTCCCGCCACCGCTCCGCCGGACGCCGC
CACCACAAAGATCAGCTACAATCCTGGAGGTGATGGATGGCTAGTGCCCA
TTCCGTCGCGTGAAACTTCCGATGTTAAAATGGCGATGGCAGGGCCGGAC
ACAAGTGGGAAGCTTACTGCTGCTGCAGTTGCGGAGGTGTTGAAGACGGG
GACAGGGGCTAGCACGGAGGATTTACGGACTGTGTGGGAGCTTTCGGATA
TCGACGAAGATGGGAAACTGGACCGCGAGGAGGTGAGGTGAAGAGAAGCG
GGTAGATGTGGAATTTCTGAGTGCGGAGATTATGGCGATAAGGTTAAGGA
CTTTTTTTTTAGTGTAGGTTTTTTTGTTTGCTGTACATTGTTTTGGTGCT
CGCCTCTGCTTTCTTTGATACTGTATACAGAGCGGATATGTCGGCAAGGT
AACAGGAATGGATTGGTTGTGCGTCGAACTTCCTTCAGATGGAAATAACG
TGTACCCACGTTGGCCTTCGATGATAAAAACGCGTTTACCCCCCTCTGCT
GCCGCCGCCGCCTCCTTCGCCTTCACCATTGCCATATTTTCTGAAATTTC
TCCGCGCCTTCAGTTTGCTCTGGCCTGGTACCTCGCCGAAAAGGCGGCTG
CTGGCGAAAAGCCCCCTGGCGTGCTTCCTCCCGACTTTATTCCTCCGTCC
AAGAGAAATGCCGTACCCACCAAGTCGGCCAACCCATTTTGATCGTCGAC
ATCAAGGTTGTACCACAAACTGGTAACCGCTGGACGTGAAACTCATTTGG
GTTATATGCTTCACAGCCTGTTCAAAGATTAGTCTCGTAGTATTTTGTAT
TTGGTGTGGGAGGCGCGCTTAATTTGAGCAGTGTGAGATATCTTGAAGAC
TATGATACCTCAAGGACACACGGGCTCTTCGCAGTGGTGTTTGTTGGGAG
CTTTTGGGGCAGCGCCAGTTAGATGCTTGGCCGGGGAGACGCTTTTACGG
ATGATTGTGTTTTTGTTGAAGGTACCGGATCCTGTATATTCGTAATCGAG
CTGATCATAGGTCGGTACGTTACCTGATTCGTACAGGTAGCAGCTGGCTG
GCACGTATGCATGCATTAAATATAGGGTGCTATTTAATAGTGTCATGAGT
AAAAATTAATACGAGTAAATGATCTGGCATGTATTTGTTTAGACGTTGAC
ATCCTCTCGCTTCCCGGCAACAGTAGACGCATAATTATGTAGGTACGAGC
GAGTCTTGGCAAGACAGGCAGAAAACAGTACGGGGTCACTTGACATGAAC
CAATGTGCGTCCCGCAAGGTAAGCATGGGATTGTGTGCACTCTGTAAGCA
TCCCGAATTGCACGGCGTGCTCTGATTGGGCGTTGGGGTAGTTCCACCCA
CGTCACTATTCAAAGGGGTATTCACACGAACGAGCTGCGTCAACTGGTGA
AAGTGGTACAGAATTTCAATACTAACGTTTTCATCTGCGCTTGTCATGTA
ACTTCGTCTTCCAATCTGTTTGCATTCTGGCGAGAGGAATAGTAATTTCC
TGAACTTCCACGGCAGAGGACATGCTTCAGGGCGAAGAGCTTGAGATATG
ACAGTGCATTAAATAATGGATATTTTCACCGTTTGAAATAGCGGGCAGAG
GAGCGGCCATCGAACAGTATGTACTAGAGGTTCAAGTTAGCTTTTTTCTT
CAGGATTAAACGTGTTTTCACGATTTTATGTGCCGAATCGAGAATGACTC
GAACATAGTCAGAAAAAGTACATGGCATCAGCTTTTGTTGGGTGTCGGTG
CTTTTCATGTAGAATCCTCTGTTCCCCAGACGTGATTATTCAAAGCCACA
ATCTAGTTGCTGTTCACGGTTCCTCTTGATTTTGCTATTTTGCCCTAAAT
TCCGAATCATGGATCAGATTTAGTCAGTTGTTTAGGTATTGGCATGGTCG
GGTGAATTAAGAGCTTTTGATCGAACCATCAACCAACCGAATCGGCCATG
TTGGTTGGAAACTGCACCAGTCGGAACGATCGATGGCATGGCCAAAAATA
TACATGGAGCTCGTTCTCCAAAAAACGTTCGTTCTCCATTTTACCAATAT
CATGTTATTTCGGGAACAGAACACGCAATGAACGCTACTACCATGTATTT
TCACCGACGATGTTGTTCGAGACATGCTTGATTTGGCACGTAATATCGTG
AAAAGCGTGTAAACACGTATCATTCTGAAGAAAAAAGCCACCCTAGACTT
CTAGGAGTATTGGGGAGTTTTCTTCCTTAAAAGGGGTAGAGGAAATCTTT
GCCCAACTCTTTAACCCCGAAACCGGGTTCATGTGTCGGCCACCCGAAGG
TTGGACTAGGTCCGTAAATTATATGGGGATGGCACCCCGAGCGTTCGCAA
GACTTTGCTCAGGGTAGTGTGGGACTCTCCACTAAAACCCCCCAATGTTG
ACTCAACTTGGCGCAGTTACACACCGCCCTACTCGAACGAGCTTCGGCCC
TGGGTGGTAGCGGGGCATTCTCGCTTATGGTCGAACACCCTGTTCGGACT
CTCGTCCTCAACACTATTGTGTTCATTACCCGAAGGTAACTCTTTGCAAA
TACCCTAGGAGGAACGGGTGCCAGTTCGGGTCCTCTTTTTGCAGGAGCGC
CGCTCTGGCAGTCGAACCCCACAACCTCCCCACCCAGGAGAAGTTACTTG
TCTCCCGTCTCAAACTCTGCAATCTTTCTCCACAGTGTTTCACTCAAACT
CTCATGGCGCGGTCATTTTCTTACTCTTCCTGAGTGATATCCGGTTCGCC
AAAACCTGCTATGAAGTATACACTATGAGTACAAGCGTAAAATGTCGCAT
GCGGCAGGATGCACCGACCTTCTTTTTTTTTTTTAACGCCCGGAAGGCTG
AGGCAAAAACCTTTTCCGCTGCTTTCACATCCAGGCATTCGCCCAAACAT
GTCTACATTTCCTTCAACAGAACAGAGTTTCCTCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11995:674..7908+

>mRNA_H-paniculata_contig11995.1264.1 ID=mRNA_H-paniculata_contig11995.1264.1|Name=mRNA_H-paniculata_contig11995.1264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2376bp|location=Sequence derived from alignment at H-paniculata_contig11995:674..7908+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGGACCGGGACGGGGTGGCCATCACCATGGCCACCACCACGGCCA
CCACCACGGTGGCAGAGGCGCCGGCTGGAGGCCACGTCCGGGTCCCCTTC
TTCCAATACGCCCTATTTTCCGGCCCATTATCCCCGTTGGGCGAGGGCTA
GGCGTCGTAGGAGCCGTTGCAACCGGTGCTGTGATTGCTGCTACCTTGCC
ACCTCCGCGGAGACGGTATCCGTCGCCGAGACCTGGGTATATCTATGTTG
TACATGGTAACGAACCTCCGCGCGCGGTGGCGGTGCAAGAGACGCCATTC
ATTGTCCAGAGGATTGACGTGCCGTCGTACGCTCAGGGAACTCAGGGAGA
GGTTTTATACCATGTGCAGATGCCTGGACCGGGACGGGGTGGCCATCACC
ATGGCCACCACCACGGCCACCACCACGGTGGCAGAGGCGCCGGCTGGAGG
CCACGTCCGGGTCCCCTTCTTCCAATACGCCCTATTTTCCGGCCCATTAT
CCCCGTTGGGCGAGGGCTAGGCGTCGTAGGAGCCGTTGCAACCGGTGCTG
TGATTGCTGCTACCTTGCCACCTCCGCGGAGACGGTATCCGTCGCCGAGA
CCTGGGTATATCTATGTTGTACATGGTAACGAACCTCCGCGCGCGGTGGC
GGTGCAAGAGACGCCATTCATTGTCCAGAGGATTGACGTGCCGTCGTACG
CTCAGGGAACTCAGGGAGAGGTTTTATACCATGTGCAGGTGACAATGAAC
GATGGTTACAAGTACGTCGTTGCTAGGCGTTACTCGCAGTTTGACCAGCT
CCGGGCGCGCGTCGGCCCGCTCCTTCGTGCAGTCAGCCCGCCCTTCCCGC
CCAAACGCGGCGTACGGAGTGCCATGTTGGGATTAGGCCAGGAAGGCATC
GAAGAGCGTAGGTGACAATGAACGATGGTTACAAGTACGTCGTTGCTAGG
CGTTACTCGCAGTTTGACCAGCTCCGGGCGCGCGTCGGCCCGCTCCTTCG
TGCAGTCAGCCCGCCCTTCCCGCCCAAACGCGGCGTACGGAGTGCCATGT
TGGGATTAGGCCAGGAAGGCATCGAAGAGCGTAGAACCATGCTCATGGCG
TGGCTCCAGTCCCTCATAACGGCGGCCACAACGGGCTCTCCAGCCCTGCG
TCTTCCCATGTATGACTTCCTCGAAACCACTACCTTTTACCCGCCGGAGC
CGGAAGATGCCGCAGGCTCTGGATCAGAGCGCACTACCTCCGCCACTGCA
ATCGCATCCCCTGCCGCTCCAGGAGCGGCCGGTATCCAAGGCTTCCCTGT
CGCAACGGCTACTCCTTACGTTGAGACGGTGGGTGGTGCATTTCCCGCCA
CCGCTCCGCCGGACGCCGCCACCACAAAGATCAGCTACAATCCTGGAGGT
GATGGATGGCTAGTGCCCATTCCGTCGCGTGAAACTTCCGATGTTAAAAT
GGCGATGGCAGGGCCGGACACAAGTGGGAAGCTTACTGCTGCTGCAGTTG
CGGAGGTGTTGAAGACGGGGACAGGGGCTAGCACGGAGGATTTACGGACT
GTGTGGGAGCTTTCGGATATCGACGAAGATGGGAAACTGGACCGCGAGGA
GAACCATGCTCATGGCGTGGCTCCAGTCCCTCATAACGGCGGCCACAACG
GGCTCTCCAGCCCTGCGTCTTCCCATGTATGACTTCCTCGAAACCACTAC
CTTTTACCCGCCGGAGCCGGAAGATGCCGCAGGCTCTGGATCAGAGCGCA
CTACCTCCGCCACTGCAATCGCATCCCCTGCCGCTCCAGGAGCGGCCGGT
ATCCAAGGCTTCCCTGTCGCAACGGCTACTCCTTACGTTGAGACGGTGGG
TGGTGCATTTCCCGCCACCGCTCCGCCGGACGCCGCCACCACAAAGATCA
GCTACAATCCTGGAGGTGATGGATGGCTAGTGCCCATTCCGTCGCGTGAA
ACTTCCGATGTTAAAATGGCGATGGCAGGGCCGGACACAAGTGGGAAGCT
TACTGCTGCTGCAGTTGCGGAGGTGTTGAAGACGGGGACAGGGGCTAGCA
CGGAGGATTTACGGACTGTGTGGGAGCTTTCGGATATCGACGAAGATGGG
AAACTGGACCGCGAGGAGTTTGCTCTGGCCTGGTACCTCGCCGAAAAGGC
GGCTGCTGGCGAAAAGCCCCCTGGCGTGCTTCCTCCCGACTTTATTCCTC
CGTCCAAGAGAAATGCCGTACCCACCAAGTCGGCCAACCCATTTTGATTT
GCTCTGGCCTGGTACCTCGCCGAAAAGGCGGCTGCTGGCGAAAAGCCCCC
TGGCGTGCTTCCTCCCGACTTTATTCCTCCGTCCAAGAGAAATGCCGTAC
CCACCAAGTCGGCCAACCCATTTTGA
back to top