mRNA_H-paniculata_contig11985.1259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11985.1259.1
Unique NamemRNA_H-paniculata_contig11985.1259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11985.1259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11985contigH-paniculata_contig11985:5522..5966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11985.1259.1prot_H-paniculata_contig11985.1259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11985 5523..5876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.291828-UTR-H-paniculata_contig11985:5521..55221622928913.291828-UTR-H-paniculata_contig11985:5521..5522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11985 5522..5522 +
1691480665.2883573-UTR-H-paniculata_contig11985:5521..55221691480665.2883573-UTR-H-paniculata_contig11985:5521..5522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11985 5522..5522 +
1622928913.3261318-UTR-H-paniculata_contig11985:5876..59661622928913.3261318-UTR-H-paniculata_contig11985:5876..5966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11985 5877..5966 +
1691480665.311171-UTR-H-paniculata_contig11985:5876..59661691480665.311171-UTR-H-paniculata_contig11985:5876..5966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11985 5877..5966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.3125374-CDS-H-paniculata_contig11985:5522..58761622928913.3125374-CDS-H-paniculata_contig11985:5522..5876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11985 5523..5876 +
1691480665.2984283-CDS-H-paniculata_contig11985:5522..58761691480665.2984283-CDS-H-paniculata_contig11985:5522..5876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11985 5523..5876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11985.1259.1

>prot_H-paniculata_contig11985.1259.1 ID=prot_H-paniculata_contig11985.1259.1|Name=mRNA_H-paniculata_contig11985.1259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MKERMRARRSFFESLEVPVSRYSASFQEFVGFTFSRWIHRGRDELSSRNR
SVGCLRCRVTYMLWFAHLVCFSFGRGLERATLYRFFIEAFLGNTDFPSRY
RDDWLDILIFSPSLACG*
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mRNA from alignment at H-paniculata_contig11985:5522..5966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11985.1259.1 ID=mRNA_H-paniculata_contig11985.1259.1|Name=mRNA_H-paniculata_contig11985.1259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=445bp|location=Sequence derived from alignment at H-paniculata_contig11985:5522..5966+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGAAGGAAAGGATGCGTGCGAGGCGGTCCTTTTTCGAGTCCTTGGAAG
TTCCGGTTTCAAGGTACAGCGCGAGTTTTCAAGAATTTGTCGGATTCACA
TTTTCGCGCTGGATTCATCGTGGTCGTGATGAGTTGAGCAGTCGAAATAG
GTCAGTTGGCTGCCTACGCTGTAGGGTAACATATATGTTGTGGTTCGCCC
ATTTGGTTTGCTTCAGCTTTGGTCGGGGTCTAGAACGCGCTACATTGTAT
CGTTTCTTTATTGAGGCTTTTCTCGGGAACACGGATTTTCCCTCACGTTA
CCGCGATGATTGGTTGGATATTTTGATATTCTCGCCGTCCCTAGCATGTG
GTTAGTCTCAGATGCGGGTAACTAGGGAGGCTGTCCGATATTATGGGGTA
GTTTTCCCATCTGGATCCTTAGATTCGGGTACGGAGAATAGCCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig11985:5522..5966+

>mRNA_H-paniculata_contig11985.1259.1 ID=mRNA_H-paniculata_contig11985.1259.1|Name=mRNA_H-paniculata_contig11985.1259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig11985:5522..5966+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAAAGGATGCGTGCGAGGCGGTCCTTTTTCGAGTCCTTGGAAGT
TCCGGTTTCAAGGTACAGCGCGAGTTTTCAAGAATTTGTCGGATTCACAT
TTTCGCGCTGGATTCATCGTGGTCGTGATGAGTTGAGCAGTCGAAATAGG
TCAGTTGGCTGCCTACGCTGTAGGGTAACATATATGTTGTGGTTCGCCCA
TTTGGTTTGCTTCAGCTTTGGTCGGGGTCTAGAACGCGCTACATTGTATC
GTTTCTTTATTGAGGCTTTTCTCGGGAACACGGATTTTCCCTCACGTTAC
CGCGATGATTGGTTGGATATTTTGATATTCTCGCCGTCCCTAGCATGTGG
TTAGATGAAGGAAAGGATGCGTGCGAGGCGGTCCTTTTTCGAGTCCTTGG
AAGTTCCGGTTTCAAGGTACAGCGCGAGTTTTCAAGAATTTGTCGGATTC
ACATTTTCGCGCTGGATTCATCGTGGTCGTGATGAGTTGAGCAGTCGAAA
TAGGTCAGTTGGCTGCCTACGCTGTAGGGTAACATATATGTTGTGGTTCG
CCCATTTGGTTTGCTTCAGCTTTGGTCGGGGTCTAGAACGCGCTACATTG
TATCGTTTCTTTATTGAGGCTTTTCTCGGGAACACGGATTTTCCCTCACG
TTACCGCGATGATTGGTTGGATATTTTGATATTCTCGCCGTCCCTAGCAT
GTGGTTAG
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