mRNA_H-paniculata_contig11985.1258.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11985.1258.1
Unique NamemRNA_H-paniculata_contig11985.1258.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11985.1258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11985contigH-paniculata_contig11985:2588..3202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11985.1258.1prot_H-paniculata_contig11985.1258.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11985 2785..3162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.2181895-UTR-H-paniculata_contig11985:2587..27841622928913.2181895-UTR-H-paniculata_contig11985:2587..2784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11985 2588..2784 +
1691480665.2554147-UTR-H-paniculata_contig11985:2587..27841691480665.2554147-UTR-H-paniculata_contig11985:2587..2784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11985 2588..2784 +
1622928913.2487187-UTR-H-paniculata_contig11985:3162..32021622928913.2487187-UTR-H-paniculata_contig11985:3162..3202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11985 3163..3202 +
1691480665.2804008-UTR-H-paniculata_contig11985:3162..32021691480665.2804008-UTR-H-paniculata_contig11985:3162..3202Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11985 3163..3202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.2316835-CDS-H-paniculata_contig11985:2784..31621622928913.2316835-CDS-H-paniculata_contig11985:2784..3162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11985 2785..3162 +
1691480665.2721472-CDS-H-paniculata_contig11985:2784..31621691480665.2721472-CDS-H-paniculata_contig11985:2784..3162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11985 2785..3162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11985.1258.1

>prot_H-paniculata_contig11985.1258.1 ID=prot_H-paniculata_contig11985.1258.1|Name=mRNA_H-paniculata_contig11985.1258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MSSPRPNPPDSNQLALFSPGTNLPRAYPARCGCVGSLSGSCVPAMLNSSL
TPVSLWPPTCSMLMTVSLRPPTCLGAAMIPLSSRSIIIEILSSRRCSCVF
IFTVPSVAGGTGAPSSIFGLFQRIR*
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mRNA from alignment at H-paniculata_contig11985:2588..3202+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11985.1258.1 ID=mRNA_H-paniculata_contig11985.1258.1|Name=mRNA_H-paniculata_contig11985.1258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=615bp|location=Sequence derived from alignment at H-paniculata_contig11985:2588..3202+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTCGCACTGTGTCCCTCTTCTGTGAGAGACTCAAATGTTGCAGAGAT
GTCTCCTACCCGCACGGGGCGCTTGCTGAAATATACAGGCAAGCACCCAA
CCTGAGAAAAAACGCTTCAAGTCTCAACTTCCACATTCGGAAGTTCTTAT
CTTTACCATTGAATTTCGGAATTGTGGGTTTGATTCTACCTGTACCGATG
TCAAGCCCAAGGCCGAACCCACCAGACTCGAACCAACTCGCGTTATTTTC
ACCGGGAACAAACCTCCCTCGTGCTTATCCCGCTCGATGTGGGTGTGTAG
GTTCTTTATCCGGGTCTTGTGTCCCCGCGATGTTGAACTCGTCGCTGACG
CCAGTCTCGCTCTGGCCACCAACCTGCTCCATGTTGATGACGGTCTCGCT
TCGACCACCAACTTGCCTCGGTGCGGCCATGATACCGCTCTCAAGTCGAT
CCATTATAATCGAGATCCTGTCCTCGAGGCGATGTAGTTGCGTCTTCATT
TTCACGGTTCCCTCCGTGGCTGGAGGCACTGGAGCGCCTTCTTCCATCTT
TGGTTTATTTCAACGAATCCGCTAGCGTCATCAAACAATATAGCAACGGC
AAGTTCACGTCTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11985:2588..3202+

>mRNA_H-paniculata_contig11985.1258.1 ID=mRNA_H-paniculata_contig11985.1258.1|Name=mRNA_H-paniculata_contig11985.1258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig11985:2588..3202+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAGCCCAAGGCCGAACCCACCAGACTCGAACCAACTCGCGTTATT
TTCACCGGGAACAAACCTCCCTCGTGCTTATCCCGCTCGATGTGGGTGTG
TAGGTTCTTTATCCGGGTCTTGTGTCCCCGCGATGTTGAACTCGTCGCTG
ACGCCAGTCTCGCTCTGGCCACCAACCTGCTCCATGTTGATGACGGTCTC
GCTTCGACCACCAACTTGCCTCGGTGCGGCCATGATACCGCTCTCAAGTC
GATCCATTATAATCGAGATCCTGTCCTCGAGGCGATGTAGTTGCGTCTTC
ATTTTCACGGTTCCCTCCGTGGCTGGAGGCACTGGAGCGCCTTCTTCCAT
CTTTGGTTTATTTCAACGAATCCGCTAGATGTCAAGCCCAAGGCCGAACC
CACCAGACTCGAACCAACTCGCGTTATTTTCACCGGGAACAAACCTCCCT
CGTGCTTATCCCGCTCGATGTGGGTGTGTAGGTTCTTTATCCGGGTCTTG
TGTCCCCGCGATGTTGAACTCGTCGCTGACGCCAGTCTCGCTCTGGCCAC
CAACCTGCTCCATGTTGATGACGGTCTCGCTTCGACCACCAACTTGCCTC
GGTGCGGCCATGATACCGCTCTCAAGTCGATCCATTATAATCGAGATCCT
GTCCTCGAGGCGATGTAGTTGCGTCTTCATTTTCACGGTTCCCTCCGTGG
CTGGAGGCACTGGAGCGCCTTCTTCCATCTTTGGTTTATTTCAACGAATC
CGCTAG
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