mRNA_H-paniculata_contig11966.1249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11966.1249.1
Unique NamemRNA_H-paniculata_contig11966.1249.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 3.500e-106
Identity = 156/253 (61.66%), Postives = 199/253 (78.66%), Query Frame = 1 
Query: 1606 QMNADSPAAEWYRTFTEKWPKPSAIVVVSAHWEGRKSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMES-YRGYREGQAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTGFSPGVTIYDGWVMGAMSLACVGYW 2361
            Q++A S AA+WYRTFT+KW KPSAIVVVSAHWEGR +++VTTG KH L +DYYGFP++ Y+L Y  PG+P+L RRI++LL + GF A G++SRGYDHG FIPLKLMYP+AD+PVVQVSLL GL  EKHL +G  L  L++ E+D+L++GSGQATH   S +R Y  G+ AP+E  F+ WLK+TA    ++  ER+RRL +W ++AP+GR +HPREEHLLPLHV AG TGF PG  I+D + MG MSLACVG+W
Sbjct:    3 QIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVD-ERDVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFW 254
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BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA)

HSP 1 Score: 239 bits (611), Expect = 2.610e-69
Identity = 133/266 (50.00%), Postives = 168/266 (63.16%), Query Frame = 1 
Query: 1564 GPGFFMKGGSGPFSQMNADSPAAEWYRTFTEKWPKPSAIVVVSAHWEGR-KSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRG---YREG-QAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTGFSPGVTIYDGWVMGAMSLA 2346
            GP FF +  +GPFS ++ +S  A  +R  +   PKP  IV+ +AHWE     IRVT      L+YDYYGFP  TY L Y  PG+PQL   IV LL  AG  AE E  RG+DHGVFIPLK++YP+AD+PVV +SL + L    H+++G AL+GL  + + +L+ GSG ATHN+   R    + EG    PR   FI WLK T  D  +SA ER RRL +W +EAP+ R SHPREEHLLPLHV AG  GF+ G  + D  V G MS+A
Sbjct:   22 GPCFFYEA-AGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGL--AGRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDG-VSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMA 283
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BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: A0A2M7G2W7_9BACT (Dioxygenase n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7G2W7_9BACT)

HSP 1 Score: 212 bits (539), Expect = 2.410e-59
Identity = 125/258 (48.45%), Postives = 150/258 (58.14%), Query Frame = 1 
Query: 1564 GPGFFMKGGSGPFSQMNADSPAAEWYRTFTEKWPKPSAIVVVSAHWEGRKSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRGYREGQAAPRELQ-FISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTGFSPGVTIYDGWVMGA 2334
            GP FFM    GP    +     A+W +      P P AIVVVSAHWE    + +T  A+  LLYDYYGFPEHTY L Y  PG P L  +I   L +    A  +  RGYDHGVFIPLKL+YPEA IPVVQ+SLLA L   +HL IG ALA L   E+ +LL+GSG + HN+  +     GQ    + Q F +WL QT      SA ER   LA W K AP GR  HPREEHLLPL VVAG    + G  ++   +MG+
Sbjct:   14 GPCFFMDWTWGPADSWDK---LADWLKNLRHTLPVPQAIVVVSAHWENSAEVLITGHAQPPLLYDYYGFPEHTYQLSYPAPGAPDLAGKIQTHLAAQAIPARIDAERGYDHGVFIPLKLIYPEAQIPVVQISLLASLDPARHLEIGKALAPL--REEGVLLLGSGMSFHNLRVF-----GQNVMEQSQAFDAWLTQTLQ---ASAEERNLALADWAK-APSGRFCHPREEHLLPLMVVAGAAESAKGEKVFTDAIMGS 257
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BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: A0A7T1Y7Q8_9GAMM (Dioxygenase n=2 Tax=Halomonadaceae TaxID=28256 RepID=A0A7T1Y7Q8_9GAMM)

HSP 1 Score: 211 bits (537), Expect = 3.200e-59
Identity = 111/225 (49.33%), Postives = 142/225 (63.11%), Query Frame = 1 
Query: 1666 KPSAIVVVSAHWEGRKSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRGYREGQAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTGFSPGVTIYDGWVMGAMS 2340
            +PSAI+V+SAHWE      +T GA   L+YDYYGFP  +Y + Y CPG P L R+I Q L  AG  A  +E RG+DHG+F+PLKLMYPEADIP VQ+SL+  L A  HL IG AL  L     DLL+IGSG + HNM+++      +   R   F +WL++T +DA ++ A+R  RL QW + AP+ R  HPREEHLLPLHV  G  G  P  T     ++G  S
Sbjct:   25 RPSAILVISAHWEAAVPT-ITAGANPALIYDYYGFPPESYEIEYPCPGEPALARQIHQALRQAGLPARLDEHRGFDHGLFVPLKLMYPEADIPCVQLSLVDSLDAATHLAIGRALRAL--EVDDLLVIGSGFSFHNMQAFFAPATPELDARNQAFEAWLEETCSDARLTEAQRTERLLQW-ERAPHARFCHPREEHLLPLHVCYGLAG-QPSETHVSATILGKRS 244
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BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: H2FST0_OCESG (Extradiol ring-cleavage dioxygenase III subunit B n=1 Tax=Oceanimonas sp. (strain GK1 / IBRC-M 10197) TaxID=511062 RepID=H2FST0_OCESG)

HSP 1 Score: 211 bits (538), Expect = 3.900e-59
Identity = 115/241 (47.72%), Postives = 145/241 (60.17%), Query Frame = 1 
Query: 1576 FMKGGSGPFSQMNADSPAAEWYRTFTE---KWPKPSAIVVVSAHWEGRKSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRGYREGQAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTG 2289
            F+  G GP   +  D    E   T      K  +PSAI+V+SAHWE R    VT+GA   L+YDYYGFP  +Y++ Y CPG P L  RI Q L  AG  A  +E RGYDHG+F+PLKLMYPEADIP VQ+SL+  L A  H+ IG AL  L   E +LL+IGSG + HNM ++      +     L F  WL+ T ++  +  +ER RRL  W ++AP+ R  HPREEHLLPLHV  G  G
Sbjct:    9 FISHGGGPMPLLG-DPDHQEMVNTLQALAGKLERPSAILVISAHWEARVPT-VTSGATPGLIYDYYGFPPESYSIRYPCPGEPALAHRICQALQEAGIPASEDEQRGYDHGLFVPLKLMYPEADIPCVQLSLVDSLDARTHVAIGRALRSL--DEDNLLVIGSGFSFHNMRAFFAPETPEIRASNLAFEDWLEDTCSNQNMDESERCRRLIDW-EQAPHARFCHPREEHLLPLHVCYGLAG 244
[Close]
BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: A0A1J4QGR4_9GAMM (Dioxygenase n=1 Tax=Oceanisphaera psychrotolerans TaxID=1414654 RepID=A0A1J4QGR4_9GAMM)

HSP 1 Score: 211 bits (537), Expect = 5.580e-59
Identity = 110/240 (45.83%), Postives = 146/240 (60.83%), Query Frame = 1 
Query: 1576 FMKGGSGPFSQMNADS--PAAEWYRTFTEKWPKPSAIVVVSAHWEGRKSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRGYREGQAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTG 2289
            F+  G GP   +         +W +    +  +P AI++VSAHWE      +T GA+  L+YDYYGFP  +Y + Y CPG P L +++ Q L +AG  A  +  RG+DHGVF+PLKLMYPEADIP VQ+SL++ L AE+HLNIG AL  L     +LL+IGSG + HNM+++      +   R   F +WL+ T  +  +  AERRRRL  W   AP+ R  HPREEHLLPLHV  G  G
Sbjct:    9 FISHGGGPLPLLGDPDHREMVQWLQDMAGRLRRPEAILIVSAHWEAAVPT-ITAGARPGLIYDYYGFPPESYEIQYPCPGEPALAQQVQQALMAAGMPARLDAERGFDHGVFVPLKLMYPEADIPCVQLSLVSSLDAEQHLNIGRALQAL--DYDNLLVIGSGFSFHNMQAFFTPGTPEIKARNQAFEAWLEDTCGNPRLEEAERRRRLIHW-DSAPHARFCHPREEHLLPLHVCYGLAG 244
[Close]
BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: U7G251_9GAMM (LigB domain-containing protein n=8 Tax=Marinobacter TaxID=2742 RepID=U7G251_9GAMM)

HSP 1 Score: 211 bits (536), Expect = 9.010e-59
Identity = 111/241 (46.06%), Postives = 151/241 (62.66%), Query Frame = 1 
Query: 1573 FFMKGGSGPFSQMN--ADSPAAEWYRTFTEKWPKPSAIVVVSAHWEGRKSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRGYREGQAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTG 2289
            F++  G GP   +         E  +   +++P PSAI+VVSAHWE      +T+GA   L+YDYYGFPE +Y++ Y CPG P L  ++   L+ AG +++ +  RG+DHG+F+PLKLMYP+ADIP VQ+SL+  L A  HL IG ALA L     +LL+IGSG + HNM ++    + +A  +  QF  WL +T   A ++ AER  RLA+W  EAP+ R  HPREEHLLPLHV  G  G
Sbjct:   16 FYLSHGGGPMPLLGDPGHRQMVESLQAAAKRFPTPSAILVVSAHWEEGVPT-LTSGANPPLIYDYYGFPEESYSIEYPCPGEPVLADKVRAALDQAGIDSKLDGERGFDHGLFVPLKLMYPDADIPCVQLSLVNSLDAGAHLAIGQALADL--DYDNLLVIGSGFSFHNMRAFFDRSDTEADTKNAQFQDWLAETCAGADLTEAERTERLARW-DEAPFARYCHPREEHLLPLHVCYGMAG 252
[Close]
BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: UPI00035E6DEC (dioxygenase n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI00035E6DEC)

HSP 1 Score: 210 bits (535), Expect = 1.180e-58
Identity = 125/269 (46.47%), Postives = 156/269 (57.99%), Query Frame = 1 
Query: 1567 PGFFMKGGSGPFSQMNADSPAAEWYRTFTEKW---------PKPSAIVVVSAHWEGRKSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRGYREGQAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTGFSPGVTIYDGWVMGAMSLA 2346
            P  ++  G+GP   M+   PA  W     E W          +P A++V+SAHWE      V   A   LLYDYYGFP HTY L +  PGNPQL  RI  LL +AG     +  RG DHGVFIPLKL  PEADIPVVQ+SL AGL   +HL +G ALA L   ++D+L++GSG + HNM+  R     Q  P  + F  WL +T     +   ER +RLA W   AP GR SHP EEHLLPLHVVAG  G  PG+ +++  VMG++  A
Sbjct:    7 PSVYLPHGAGPCFFMDWP-PAGTW--DHMESWLRNLIHQVGRRPRALLVISAHWE-TPEFSVNAQAAPGLLYDYYGFPAHTYQLEWPAPGNPQLANRIQDLLGAAGIPCVQDHKRGLDHGVFIPLKLAVPEADIPVVQLSLRAGLDPAEHLALGKALAPL--RDEDVLIVGSGMSFHNMQRLR-QGGSQPDPDSVLFDGWLAETVA---LPQDEREKRLAHW-DRAPGGRASHPVEEHLLPLHVVAGAGGADPGLKVFEDKVMGSLQSA 264
[Close]
BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: A0A5B0VF70_9GAMM (Dioxygenase n=1 Tax=Marinobacter salinexigens TaxID=2919747 RepID=A0A5B0VF70_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 1.360e-58
Identity = 111/241 (46.06%), Postives = 145/241 (60.17%), Query Frame = 1 
Query: 1576 FMKGGSGPFSQMN--ADSPAAEWYRTFTEKWPKPSAIVVVSAHWEGRKSI-RVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRGYREGQAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTG 2289
            F+  G GP   M         +  R    + P+P AI+++SAHWE  +S+  +T GA   L+YDYYGFP  TY + Y CPG P+L R++ Q L  AG  A+ +E RG+DHG+F+PL LMYP ADIP +Q+SL+  L A  H+ IG AL  L     DLL+IGSG + HNM ++      +   R   F  WL+QT  DAT+  AER  RL  W ++AP+ R  HPREEHLLPLHV  G  G
Sbjct:    9 FISHGGGPMPLMGDPGHKEMVDRLRDIAAELPRPKAILLISAHWE--ESVPTITAGANPSLIYDYYGFPPETYEIQYPCPGEPELARKVHQALEQAGIPAKLDEQRGFDHGLFVPLTLMYPAADIPCIQLSLMNNLDAAGHIAIGRALQAL--DYDDLLVIGSGFSFHNMRAFFAPDTPELRARNEGFEHWLEQTCMDATLDEAERSSRLEHW-EDAPHARFCHPREEHLLPLHVCYGLAG 244
[Close]
BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Match: A0A1A9F5M9_9GAMM (Dioxygenase n=2 Tax=Marinobacterium TaxID=48075 RepID=A0A1A9F5M9_9GAMM)

HSP 1 Score: 209 bits (533), Expect = 2.260e-58
Identity = 124/271 (45.76%), Postives = 157/271 (57.93%), Query Frame = 1 
Query: 1567 PGFFMKGGSGPFSQMNADSPAAEWYRTFTEKW---------PKPSAIVVVSAHWEGRKSIRVTTGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEESRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLESEKDLLLIGSGQATHNMESYRGYREGQAAPRELQFISWLKQTATDATISAAERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTGFSPGVTIYDGWVMGAMSLACV 2352
            P  F+  G+GP   M+   PA  W     E W          +P A++V+SAHWE  +   V   A   LLYDYYGFP HTY L +  PGNP+L  RI  LL  AG     E  RG DHGVFIPLKL  P+ADIPVVQ+SL AGL   +HL +G ALA L   ++ +L+IGSG + HNM+  R     Q  P  ++F  WL +T     +  AER +RL  W  +AP GR SHP EEHLLPLHV+AG  G  PG  +++  VMG++  A +
Sbjct:    7 PSIFIPHGAGPCFFMDWP-PAGTW--DHMEAWLSNVISQLDSRPRALLVISAHWEAPE-FSVNAQAAPSLLYDYYGFPAHTYQLQWPAPGNPELAGRIQTLLADAGIPCTPEHKRGLDHGVFIPLKLATPDADIPVVQLSLRAGLDPAEHLALGKALAPL--RDEGVLIIGSGMSFHNMQRLR-QGGAQTDPDSIRFDHWLAETVA---LPRAEREQRLGNWA-QAPGGRASHPAEEHLLPLHVIAGAAGADPGQKVFEDRVMGSVQSAFI 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11966.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRX5_ECTSI3.500e-10661.66LigB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CEX8_9STRA2.610e-6950.00Catalytic LigB subunit of aromatic ring-opening di... [more]
A0A2M7G2W7_9BACT2.410e-5948.45Dioxygenase n=1 Tax=bacterium (Candidatus Blackall... [more]
A0A7T1Y7Q8_9GAMM3.200e-5949.33Dioxygenase n=2 Tax=Halomonadaceae TaxID=28256 Rep... [more]
H2FST0_OCESG3.900e-5947.72Extradiol ring-cleavage dioxygenase III subunit B ... [more]
A0A1J4QGR4_9GAMM5.580e-5945.83Dioxygenase n=1 Tax=Oceanisphaera psychrotolerans ... [more]
U7G251_9GAMM9.010e-5946.06LigB domain-containing protein n=8 Tax=Marinobacte... [more]
UPI00035E6DEC1.180e-5846.47dioxygenase n=1 Tax=Marinobacterium rhizophilum Ta... [more]
A0A5B0VF70_9GAMM1.360e-5846.06Dioxygenase n=1 Tax=Marinobacter salinexigens TaxI... [more]
A0A1A9F5M9_9GAMM2.260e-5845.76Dioxygenase n=2 Tax=Marinobacterium TaxID=48075 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11966contigH-paniculata_contig11966:2..5710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.5
Seed ortholog evalue2.4e-89
Seed eggNOG ortholog2880.D8LRX5
KEGG rclassRC00387
KEGG koko:K15777
KEGG ReactionR08836
KEGG Pathwayko00965,map00965
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ferrous iron binding
EggNOG OGs2QS66@2759,COG3384@1
Ec32 ortholog descriptionExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B
Ec32 orthologEc-08_002800.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size2412
Cds size834
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11966.1249.1prot_H-paniculata_contig11966.1249.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11966 1580..5710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.560002-UTR-H-paniculata_contig11966:1..15791622928911.560002-UTR-H-paniculata_contig11966:1..1579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11966 2..1579 +
1691480664.5524595-UTR-H-paniculata_contig11966:1..15791691480664.5524595-UTR-H-paniculata_contig11966:1..1579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11966 2..1579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.58334-CDS-H-paniculata_contig11966:1579..19541622928911.58334-CDS-H-paniculata_contig11966:1579..1954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11966 1580..1954 +
1691480664.5619075-CDS-H-paniculata_contig11966:1579..19541691480664.5619075-CDS-H-paniculata_contig11966:1579..1954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11966 1580..1954 +
1622928911.600986-CDS-H-paniculata_contig11966:4345..44531622928911.600986-CDS-H-paniculata_contig11966:4345..4453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11966 4346..4453 +
1691480664.5692067-CDS-H-paniculata_contig11966:4345..44531691480664.5692067-CDS-H-paniculata_contig11966:4345..4453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11966 4346..4453 +
1622928911.615631-CDS-H-paniculata_contig11966:5359..57101622928911.615631-CDS-H-paniculata_contig11966:5359..5710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11966 5360..5710 +
1691480664.5763276-CDS-H-paniculata_contig11966:5359..57101691480664.5763276-CDS-H-paniculata_contig11966:5359..5710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11966 5360..5710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11966.1249.1

>prot_H-paniculata_contig11966.1249.1 ID=prot_H-paniculata_contig11966.1249.1|Name=mRNA_H-paniculata_contig11966.1249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp
MKGGSGPFSQMNADSPAAEWYRTFTEKWPKPSAIVVVSAHWEGRKSIRVT
TGAKHELLYDYYGFPEHTYNLGYNCPGNPQLGRRIVQLLNSAGFEAEGEE
SRGYDHGVFIPLKLMYPEADIPVVQVSLLAGLSAEKHLNIGTALAGLLES
EKDLLLIGSGQATHNMESYRGYREGQAAPRELQFISWLKQTATDATISAA
ERRRRLAQWLKEAPYGRLSHPREEHLLPLHVVAGFTGFSPGVTIYDGWVM
GAMSLACVGYWGQDGGGGGGGGGGGGGG
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mRNA from alignment at H-paniculata_contig11966:2..5710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11966.1249.1 ID=mRNA_H-paniculata_contig11966.1249.1|Name=mRNA_H-paniculata_contig11966.1249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5709bp|location=Sequence derived from alignment at H-paniculata_contig11966:2..5710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTGATGTTATCCGCTTTCGCGCAGCCTTGGACCGCTTAGCATGTATCA
GCAATAATTCTTTTTCGGATAACCAAAAGCTATTTTATCCTCAATAAAAA
TATCGATCCTCAATTAGGATGATCGGCTGTTTATGTCACTAGGCTAATGA
TCAGCAGAACGTTAATCACTTTCCCCCAAAATTATGGCTTAACTATACCA
ACACACACTATGTATGCCCAGGGTGGTGGAGGACTAACCGGGAAACCGAA
ACACGTCTCAGTACATTGGAGACATGGAAAGGCTGCATTCGGCCCGAATC
TCGTGTGATGTCTTGATGTGCCATGCCTGCATCCGTAACCGTTACGGAAC
TCCCGCAATAGCCGTGCTGCGATTCGTCTGCAAATATTCAATGGTTGATG
TTTTCTTCGGCAAACGAGGGATTCCTCTGTATTTTTATTTTATGTATGGA
TGTATGTGTGTATTTATATATACCTACGGTGCTCGTGTTATCCATATTCC
ATCATGCACCACACCCACCACCACACACTACACATCACAGCGGCACATAT
CAAAAACAGTCTTGGCTCAGACGAATTGAAAAAGCAAGGCCTGTCGGCGA
GGCCGAACAGACAGTGAAGTCAGAGTCCCTTCTCTTGGTAGGCTTTCTCG
TCGACTATTAATCGTTCTTGTTGACGTTTTGAGCCCCCAGACGGCTCAAT
TCACCTCGGTGAAGTAAAAAACATGATCAACCGAAAGCGATGGCGTCCCT
GAAAAAAATGTTGCATGTCGTCACGACACCACCAATATACTCCACGCTAG
CTCAACGCGCTACACTCCACAACATGTGCTGTCAATATCGTTGGTTTCAG
CAAAAAATACAAAGAAAAAATAAACAAGTGTAAAGATACAATATATGAAG
AGGCAGTTTTCACCCTCACTCGTGGGCGACAGTTTTTTCATCCTCTGCAG
TAGTATATCTATTGCCCCATTTACCCGTAAACAGGCAGAGCTCCTTCGTT
TTCCTGCTTTGAACTAGTGCGCGATGGACAGGTGACATCGCCTTTGCCAG
GTTGTACCCTTGCTATTCATAATTACTGTGTGTGTGGAGCATTTGACTAT
CCGGTGACCCTCTAGTATTTGGGCAAATGAGATCGCTTCTTCTTACAAAA
AAAATCACCCTTAGGGAAACTGTGTGTAACTTTCCCCTTTCTCTTTAAAT
ATTAGTCTGTAGTATCTTTGTAGTGATGTACCGACAGCGCTGTCAAAAAC
GACTCAAGTATCCCTCATGCACACTTACACATATGTAGTGCAGGAGGCGC
CTACCCCGCAGAGGAACAAATAGCTCTGTTTTTGTTCAAGGAAATATAGA
AATATTTCGGTATGGAAGCATCGGATAGAGAGATTTTTGCCTTAGCCTTC
CGGCGGTTAATTTTTTTTTTTCAATGTAGTGTAGTGTAGGGCGATACATA
CCGTACCTATAGTAGTGGTACGTTATACACATGAACACGACAATTGGATA
CATACATACGAAGTTCATAATACATACATCCATATACTTGAAAAACGAGC
ACACGCTGCTGCAGGTCCCGGATTCTTCATGAAAGGAGGTTCCGGCCCAT
TCAGTCAGATGAACGCAGACAGTCCGGCGGCCGAGTGGTATAGAACCTTC
ACCGAAAAGTGGCCCAAGCCGTCGGCCATTGTCGTCGTCTCCGCACACTG
GGAAGGTCGAAAATCGATCCGTGTGACAACAGGCGCCAAGCATGAGCTGC
TCTATGACTACTACGGCTTTCCCGAGCACACGTATAATCTTGGGTATAAT
TGCCCCGGTAACCCGCAGCTTGGGCGACGGATCGTGCAGTTGCTCAATAG
TGCAGGGTTCGAGGCGGAAGGCGAAGAGAGCCGGGGTTACGACCATGGAG
TTTTTATTCCGCTTAAGCTCATGTATCCGGAGGCTGATATTCCCGTCGTC
CAGGTGTGTAATATGTGTTTTTTGTAGTAGTGATGATGATGACGATGCTG
TAAAGCTGTCTTTTGTTTTCATTGTATAAAGAGAAGACATTTTTATACTG
TTTGTTTAATATATATATATATATATACATATACATATACATATCGTTAA
GTGACCAACATTTGCTCTTACTACGAATGAAATATTTTGTTTTTTTCTTC
GTATTTTTAGGATTTGAGTCATTTTTCTTACCGACTTCTCGAGACTCGCT
GTTTTTATCATTATTATGACTAGAAAAAATATATATACAATAGTAGTATT
CATATGTAGGCGTGTTCAATAGGTGTTTTGGACCTGAACCGAATGTTGTT
CGTTTACCAGCTCATAATGAACCGGAAAAAAAAACCACCTCTGATTGAAC
CGAGAGTAGGGGACGTGACTTTAGTCATCATCCAGAGGCTAGCCTGAAGA
ACGAATCCCCACGCTCGGCATCATGCTGTCGTGTCGCCAGATGTCCCGAG
CAAGGGGCGCGCACCAGAGGTACGTGTGGAGGTCTCACCCCGCCGGTGTG
ATTGAAAATTGGGGCAGGAATCTAGACGAATATCAATGAATCAGGCAGAA
ATCGGTAGGCAAGAATCGTACTCAAACGATGCAGCCGCGTATGGATGATG
CTGCTGGCTATCCGTTGCTCCCATCACGAGCGATCGCTGAACCCTTGGCG
GATTTGCCTAACAAGGGCACTGAAGGATAGGTAACTCAAGTCATGTCGAA
GGCCACGTGGTCATGACGAATTTCGGATGGAGTAAAAATGTGGTTGATAT
CCACGTGAATGTCAGGACTTAATGTAGATTTTAGCGATGCGGATGACGTG
AATCCTGAAAAATGTAAAGGAAAATGTATGAAGTTACAAACCATATGTAT
AGCTAACTCTCTGACTGACGTGCAGTTCTGACAGAACACACGTGCTCTCG
AAAACTGGCTCTGTTTTTTGCCTTCTCTAGATACTCCTGAGTCTGGTGCG
ATTGCCGAAAGGAACACCGTCCCAGCCGGCCAGTAGTCGGACACGTCGCT
GCGAGTCTATTATACGCGACTAAATAGTGCCTGCATAATTTTGGTTCAGC
TACTTTGGAGCGTGCAGCGAAAAATGATCTGATTTTTTGCTATGGGAACA
ATGGGTGAGAACTATCCGTTTTTCTCACATGAATCTGGTTACTAATCTCT
GAATCAAATTTGCAACACAAGTGTTACTGGTCTACATTCTGTGGAGATCA
TGTTTCTGAGGTTCCTGAGGTTCCTGAGGTTCCTGAGGTTTATAAGCCCC
GATTCCCTGCACAACATCTGGTGGCGTTTCTCTCCCATTATCGGAACATT
TTGTAGCTGCTTCTGACGTTAGAGGATGACACAGTTGGTGTGTAATACAG
AGTTATGTTGACATGAACGTCGTCAACCATTGCGTGTGGCTTCCGAGCCC
GTGCTCCGTACGTTAGTCCCAAACGTATAGGGCGAATCACCAGAGTTGGC
GTTTGGTCTCTGGAGAGCCGATCAGTCGCGCTCTCTCTCTCTCTGGTGAG
GATGGCGTCGCGTTTTCTCGGTCTGGGTAGGATTTTCAAGCTAGCGTTTT
GAAGGATTCAATAACCGCGTTTAGATTATGACAATTGCTTCACCCCCCGG
GACAAATACGAATGGGTCATTCGCAACCGTCTCGAATTATCATTAATTGT
CTTGGGTAAACACGTATTTATTCGTTTACAAGTCTATGAATGGTCACTCT
ACAAATGGTCACCAGGTAGTCGTATACCCGGCGAGCAGTCACACACGCAA
GTCCTGTCTGTTTCCGGATGGTGCTGCACAGATTGAAAACTCTATATGCC
CGAGCTTTTCTATGCTCCATGGCATATCGAGTACACTGCATATTATTCGC
GTTAAGTGGACATCGTTTTCCCCAACTCGAACAGATACGGTATTCATTTC
AGATTTCTCGTATGTATTCGTGTCTTGTATTCGCATTTGTCCGGGGGGAT
GAAATTCTTGACAAATCAGATGAGCTTGCAGTTCTGGTACATGTAATGTA
TCGAACCGGTTGGCTGAAAGGCATTACTTTTACATCTTTTAAAAATTATG
TACTTGAAATCAAAGTTGGCCATTTAAACATACACTCGAAGTATATCGTA
CGTGCATCAATACATACATAGCGCGTGTTGCCTCCTCCCCTCCCCCCCCC
AAATAAATAAATGAAAGCTGAAGGATGTATCATGAAATTTATAACGTTTT
CTCATTGTGGTCTGACGTGAAGTCGAGTGCAGTCAACGAGCTAAGACTTG
ATTTTTTTTTTTTTATTATTAATTTGTTTTTCTCATTTTACATTTACTTT
TTTTTGTGTTTTTTTTCTTTTTAATGTGTTTACCAACTATGCAGGTTTCC
CTACTAGCTGGCCTCAGCGCCGAGAAGCACCTCAACATAGGCACAGCACT
GGCTGGACTACTGGAAAGTGAAAAGGATCTTTTGCTCATTGGCAGTGGGC
AGGTGGGTAGCTAGAGGTGGATGGGCGGGTATGGGCGTTTTTTTGTGTGT
GTGTGTGTTTGGGCGCGTTGATCGTACTGAGAGAGGGGGGGATCGTCTCT
TCGGTTCGATGAAGACTTTGAATAGCAATACTTTCGTTTCATATCGCGTA
GGGCAAGAGATGGTCTAGCCAATCAAGTGTACAGCAGGGTGTCGTTTAGC
TAATCAAGTTTGCGGCAGGGAGGGTTCTAGCTAGTCAACAGTAATCGGCC
CCTTGATTTATTGAATTTGCGGTTGAGTATAGCTAGCCATAATTAGCTGC
TTACTTCCTAGTAATCCAGTTCTACTGATGAACGTACAAGAATGGAGTTT
GAGCTCACCTTCGTAACGTCAACGTGGGTACACTGGAGTTGTTATATGGG
TATTAGAGCTTGCCTGTCCCCTCCTGCGCCCGCCCGTGTGTCTGCTATGT
TCCCTTTTTGAGCTCGTTTCGGAAGGCATGATAAATCAATCACCACGTTT
TTTTTTTGTTTTTTTTGGCGTTTTACTATAAATTTTGTCATCATGACAGT
TCATCGTCGTCATAACAAGTTTACCTGCAAGCATTATCGTTTCAATATCT
GTACGGCACCTGCACGAAAATCGTTGTTCATGTTCACATACACACACACA
ATGGGAAAAAGACACACCACACGATGTATAGTAGGAAAAACGATAGTAAT
CCGTAAAGACGACCGACCTCAATGATTGAATTTGAGTTTTATGTCTAACC
TCTAACCTGTTACAAAACCCGGAGCGTAGATAGCCCGATAAAAGTCAAAC
GGCTTTTTTTAATTCCGATTCATCAGATGACGTAAGAAACCAAATGATAC
AAGAGTCTTTTTTTTTCATCTATATTTAGTATTTTCGGTTTAAACTGTTG
TTGTGCAGGCAACGCACAACATGGAGAGCTACCGCGGGTACCGCGAAGGA
CAGGCCGCCCCTCGAGAGCTACAGTTCATCTCATGGCTCAAGCAGACGGC
GACCGATGCAACCATTTCCGCCGCGGAGCGACGTCGTCGCCTGGCGCAAT
GGTTGAAAGAGGCGCCTTACGGTCGACTGTCGCACCCGCGGGAGGAGCAC
CTACTGCCGCTGCACGTAGTCGCCGGTTTTACTGGATTTTCCCCAGGCGT
CACCATCTACGACGGCTGGGTTATGGGGGCCATGTCTCTGGCTTGCGTGG
GATATTGGGGGCAGGATGGTGGTGGCGGTGGCGGTGGCGGTGGCGGTGGT
GGTGGTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig11966:2..5710+

>mRNA_H-paniculata_contig11966.1249.1 ID=mRNA_H-paniculata_contig11966.1249.1|Name=mRNA_H-paniculata_contig11966.1249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig11966:2..5710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGGAGGTTCCGGCCCATTCAGTCAGATGAACGCAGACAGTCCGGC
GGCCGAGTGGTATAGAACCTTCACCGAAAAGTGGCCCAAGCCGTCGGCCA
TTGTCGTCGTCTCCGCACACTGGGAAGGTCGAAAATCGATCCGTGTGACA
ACAGGCGCCAAGCATGAGCTGCTCTATGACTACTACGGCTTTCCCGAGCA
CACGTATAATCTTGGGTATAATTGCCCCGGTAACCCGCAGCTTGGGCGAC
GGATCGTGCAGTTGCTCAATAGTGCAGGGTTCGAGGCGGAAGGCGAAGAG
AGCCGGGGTTACGACCATGGAGTTTTTATTCCGCTTAAGCTCATGTATCC
GGAGGCTGATATTCCCGTCGTCCAGATGAAAGGAGGTTCCGGCCCATTCA
GTCAGATGAACGCAGACAGTCCGGCGGCCGAGTGGTATAGAACCTTCACC
GAAAAGTGGCCCAAGCCGTCGGCCATTGTCGTCGTCTCCGCACACTGGGA
AGGTCGAAAATCGATCCGTGTGACAACAGGCGCCAAGCATGAGCTGCTCT
ATGACTACTACGGCTTTCCCGAGCACACGTATAATCTTGGGTATAATTGC
CCCGGTAACCCGCAGCTTGGGCGACGGATCGTGCAGTTGCTCAATAGTGC
AGGGTTCGAGGCGGAAGGCGAAGAGAGCCGGGGTTACGACCATGGAGTTT
TTATTCCGCTTAAGCTCATGTATCCGGAGGCTGATATTCCCGTCGTCCAG
GTTTCCCTACTAGCTGGCCTCAGCGCCGAGAAGCACCTCAACATAGGCAC
AGCACTGGCTGGACTACTGGAAAGTGAAAAGGATCTTTTGCTCATTGGCA
GTGGGCAGGTTTCCCTACTAGCTGGCCTCAGCGCCGAGAAGCACCTCAAC
ATAGGCACAGCACTGGCTGGACTACTGGAAAGTGAAAAGGATCTTTTGCT
CATTGGCAGTGGGCAGGCAACGCACAACATGGAGAGCTACCGCGGGTACC
GCGAAGGACAGGCCGCCCCTCGAGAGCTACAGTTCATCTCATGGCTCAAG
CAGACGGCGACCGATGCAACCATTTCCGCCGCGGAGCGACGTCGTCGCCT
GGCGCAATGGTTGAAAGAGGCGCCTTACGGTCGACTGTCGCACCCGCGGG
AGGAGCACCTACTGCCGCTGCACGTAGTCGCCGGTTTTACTGGATTTTCC
CCAGGCGTCACCATCTACGACGGCTGGGTTATGGGGGCCATGTCTCTGGC
TTGCGTGGGATATTGGGGGCAGGATGGTGGTGGCGGTGGCGGTGGCGGTG
GCGGTGGTGGTGGTGGTGCAACGCACAACATGGAGAGCTACCGCGGGTAC
CGCGAAGGACAGGCCGCCCCTCGAGAGCTACAGTTCATCTCATGGCTCAA
GCAGACGGCGACCGATGCAACCATTTCCGCCGCGGAGCGACGTCGTCGCC
TGGCGCAATGGTTGAAAGAGGCGCCTTACGGTCGACTGTCGCACCCGCGG
GAGGAGCACCTACTGCCGCTGCACGTAGTCGCCGGTTTTACTGGATTTTC
CCCAGGCGTCACCATCTACGACGGCTGGGTTATGGGGGCCATGTCTCTGG
CTTGCGTGGGATATTGGGGGCAGGATGGTGGTGGCGGTGGCGGTGGCGGT
GGCGGTGGTGGTGGTGGT
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