mRNA_H-paniculata_contig11955.1244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11955.1244.1
Unique NamemRNA_H-paniculata_contig11955.1244.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Match: D8LPW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 8.650e-17
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   13 MAKALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV 138
            MAKALLLNALHDALSDYVVGLSPE+LKVGVWSGKIVLD+L+V
Sbjct:    1 MAKALLLNALHDALSDYVVGLSPERLKVGVWSGKIVLDELQV 42
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BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Match: A0A6H5K5U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.690e-15
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   13 MAKALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV 138
            MAKALLL+ALHDALSDYVVGLSPE+LKVGVWSG IVLD+L+V
Sbjct:    1 MAKALLLSALHDALSDYVVGLSPERLKVGVWSGTIVLDELQV 42
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BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Match: A0A836C8S3_9STRA (Peroxin/Ferlin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.330e-9
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   13 MAKALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV 138
            MAK LLLNAL  A +DYVVGL+ +KLK+GVWSG+I L DL+V
Sbjct:    1 MAKRLLLNALRSAFADYVVGLTEDKLKLGVWSGEIELHDLQV 42
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BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Match: A0A7S3YJ41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJ41_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 2.630e-8
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   13 MAKALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV 138
            MAK LLLN L D   DYVVGLS E LKVGV+ GKI L+DL++
Sbjct:    1 MAKTLLLNTLSDLFGDYVVGLSKENLKVGVFKGKIELNDLQL 42
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BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Match: F0YBC1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBC1_AURAN)

HSP 1 Score: 53.9 bits (128), Expect = 3.730e-7
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 GREVMAKALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV 138
            G  +  K +L NAL   + D +VG + +KLKVG+WSGKI LD+LEV
Sbjct:  537 GNTMSVKTVLFNALQGVIGDLIVGFTADKLKVGLWSGKIELDNLEV 582
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BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Match: A0A7S3ZZ16_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZ16_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.550e-7
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   19 KALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV 138
            K LL   L DAL DY+ GL+PE LK+G+WSGKI L +L V
Sbjct:    4 KKLLYGVLQDALGDYIEGLAPESLKLGLWSGKIELQNLRV 43
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BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Match: A0A4D9D3E8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3E8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.610e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   13 MAKALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV 138
            MA+ LLLN L  A  D V GL+ E LKVGVWSG+I+L +L +
Sbjct:    1 MARQLLLNTLTSAFGDLVEGLTEENLKVGVWSGEILLKNLRL 42
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BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Match: I2CPP9_NANGC (Vacuolar protein sorting-associated protein vps13 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPP9_NANGC)

HSP 1 Score: 48.5 bits (114), Expect = 2.080e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   13 MAKALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV 138
            MA+ LLLN L  A  D V GL+ E LKVGVWSG+I+L +L +
Sbjct:    1 MARQLLLNTLTAAFGDLVEGLTEENLKVGVWSGEILLKNLRL 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11955.1244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LPW3_ECTSI8.650e-1792.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5U0_9PHAE2.690e-1588.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8S3_9STRA1.330e-969.05Peroxin/Ferlin domain-containing protein n=1 Tax=T... [more]
A0A7S3YJ41_HETAK2.630e-866.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YBC1_AURAN3.730e-752.17Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZZ16_9STRA9.550e-760.00Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A4D9D3E8_9STRA1.610e-557.14Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
I2CPP9_NANGC2.080e-557.14Vacuolar protein sorting-associated protein vps13 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11955contigH-paniculata_contig11955:3302..3439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D8LPW3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size126
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.05475-UTR-H-paniculata_contig11955:3301..33131622928911.05475-UTR-H-paniculata_contig11955:3301..3313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11955 3302..3313 +
1691480664.395012-UTR-H-paniculata_contig11955:3301..33131691480664.395012-UTR-H-paniculata_contig11955:3301..3313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11955 3302..3313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.121165-CDS-H-paniculata_contig11955:3313..34391622928911.121165-CDS-H-paniculata_contig11955:3313..3439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11955 3314..3439 +
1691480664.410845-CDS-H-paniculata_contig11955:3313..34391691480664.410845-CDS-H-paniculata_contig11955:3313..3439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11955 3314..3439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11955.1244.1prot_H-paniculata_contig11955.1244.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11955 3314..3439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11955.1244.1

>prot_H-paniculata_contig11955.1244.1 ID=prot_H-paniculata_contig11955.1244.1|Name=mRNA_H-paniculata_contig11955.1244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
MAKALLLNALHDALSDYVVGLSPEKLKVGVWSGKIVLDDLEV
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mRNA from alignment at H-paniculata_contig11955:3302..3439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11955.1244.1 ID=mRNA_H-paniculata_contig11955.1244.1|Name=mRNA_H-paniculata_contig11955.1244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig11955:3302..3439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGCGAAGTGATGGCGAAGGCGCTGCTGCTGAACGCCCTACATGACGC
TTTGTCTGACTATGTGGTCGGACTGTCTCCCGAGAAACTAAAAGTCGGAG
TGTGGTCGGGCAAGATTGTGCTGGATGACCTCGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11955:3302..3439+

>mRNA_H-paniculata_contig11955.1244.1 ID=mRNA_H-paniculata_contig11955.1244.1|Name=mRNA_H-paniculata_contig11955.1244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig11955:3302..3439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGGCGCTGCTGCTGAACGCCCTACATGACGCTTTGTCTGACTA
TGTGGTCGGACTGTCTCCCGAGAAACTAAAAGTCGGAGTGTGGTCGGGCA
AGATTGTGCTGGATGACCTCGAGGTGATGGCGAAGGCGCTGCTGCTGAAC
GCCCTACATGACGCTTTGTCTGACTATGTGGTCGGACTGTCTCCCGAGAA
ACTAAAAGTCGGAGTGTGGTCGGGCAAGATTGTGCTGGATGACCTCGAGG
TG
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