mRNA_H-paniculata_contig11939.1235.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: D7FNN3_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN3_ECTSI) HSP 1 Score: 231 bits (589), Expect = 5.060e-73 Identity = 130/217 (59.91%), Postives = 145/217 (66.82%), Query Frame = 2 Query: 35 MGKIGAETCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCSGKRARPEDAKNAQLAI-SPEATTG-------DPLAEKRLRTDGADGPSGSNATVGSSADAGAGAPAPCVRKSRDQWRGGKLEDDAEEEWAMSADQRARISQCTWLKAALRDPKLQGLLTEIDRAEDREKALAFHRTNPQFGEFMDKLLLEIEEYRTGGADEPDLVAAEP 661 MGKI AETC VC+ENPSKYRCP C PYCSL CNKAHKAG+ PC+GKRA A L+ SP P KR R + +G A GS+ CVRK RDQWRGG+ ED EEEW MSADQ RIS C WLKAA+RDP LQ LLTEID+A+DREKALAFHRT+ QFGEFMDK+LLEIEEYR GG EP+LVAA+P Sbjct: 1 MGKIEAETCSVCKENPSKYRCPRCGAPYCSLVCNKAHKAGSGSAPPCTGKRA------GAPLSTPSPNGXXXXXXXXRHSPAGAKRPRKEEVANENGGVAVEGSNKA--------CVRKGRDQWRGGR-EDKEEEEWQMSADQMERISGCAWLKAAVRDPILQKLLTEIDQADDREKALAFHRTSTQFGEFMDKMLLEIEEYRKGGTGEPELVAADP 202
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: A0A835YLN6_9STRA (HIT-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN6_9STRA) HSP 1 Score: 114 bits (285), Expect = 2.840e-27 Identity = 76/196 (38.78%), Postives = 99/196 (50.51%), Query Frame = 2 Query: 38 GKIGAETCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKS------PCSGKRARPEDAKNAQLAISPEATTGDPLAEKRLRTDGADGPSGSNATVGSSADAGAGAPAPCVRKSRDQWRGGKLEDDAEEEWAMSADQRARISQCTWLKAALRDPKLQGLLTEIDRAEDREKALAFHRTNPQFGEFMDKLLLEI 607 GK A C +C + PSKYRC GC YCS+AC K HKAG+ ++ PC+GKRAR D A P A P RL+ + P V+K Q + E W ++ RA++S WL+AALRDPKLQ L+ +ID A +RE L FHRTNP+F MD++LLE+ Sbjct: 12 GKPAAAICHICNQAPSKYRCAGCDARYCSVACFKTHKAGSTGENGTPVRPPCTGKRARAGDD-----AGRPAADNAAPAV--RLQQXXXXXXXXXXXXXXXXXXXRSAVPVESVKKEAAQ--------EEEAGWQLTDAHRAQLSGSEWLRAALRDPKLQTLILQIDGARNREAELRFHRTNPEFSALMDRILLEM 192
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: A0A2T7DEX6_9POAL (HIT-type domain-containing protein n=3 Tax=Panicum TaxID=4539 RepID=A0A2T7DEX6_9POAL) HSP 1 Score: 67.4 bits (163), Expect = 4.530e-10 Identity = 50/187 (26.74%), Postives = 80/187 (42.78%), Query Frame = 2 Query: 44 IGAETCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCSGKRARPEDAKNAQLAISPEATTGDPLAEKRLR--TDGADGPSGSNATVGSSADAGAGAPAPCVRKSRDQWRGGKLEDDAEEEWAMSADQRARISQCTWLKAALRDPKLQGLLTEIDRAEDREKALAFHRTNPQFGEFMDKLL 598 +G +C VC+E PSKY+CP C PYCS+ C K HK + K+ + N++ + E T L E + D PS S T C + + W + ++ +++ ++ ALRDP+LQ ++ +ID + + EK L F +F DK+L Sbjct: 1 MGGGSCSVCKEAPSKYKCPSCRTPYCSVTCFKKHKEESCQKTLVQDE--------NSKSPLQEEVTRSSGLVEDGTKCPNDKDQHPSLSPNTT-------------CPXXXXXXXXXXXALEVEDPSWLVDNNRLRSLAEVKEIRDALRDPELQKMILKIDGSSEPEKELEKVMEGQAFRQFTDKIL 166
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: A0A368RCM1_SETIT (HIT-type domain-containing protein n=8 Tax=Setaria TaxID=4554 RepID=A0A368RCM1_SETIT) HSP 1 Score: 67.8 bits (164), Expect = 6.510e-10 Identity = 50/187 (26.74%), Postives = 79/187 (42.25%), Query Frame = 2 Query: 44 IGAETCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCSGKRARPEDAKNAQLAISPEATTGDPLAEKRLRTDGADGPSGSNATVGSSADAGAGAPAPCVRKSRDQWRGGKLEDDAEEEWAMSADQRARISQCTWLKAALRDPKLQGLLTEIDRAEDREKALAFHRTNPQFGEFMDKLLLE 604 +G +C VC+E PSKY+CP C PYCS+ C K HKA ++ Q + E + PL E+ R+ G G G+ C + + W + ++ +++ +K ALRDP+LQ ++ +ID + + EK L F +F DK +E Sbjct: 1 MGGGSCSVCKEAPSKYKCPSCRTPYCSVTCFKKHKAE-----------------ESCQKILLQEDVSKSPLQEEVTRSSGLVG-DGTKCPNDKDQHPSLSPNTTCPAXXXXXXXXXXALEVEDPSWLVDNNRLRSLAELKEIKDALRDPELQKMILKIDGSSEPEKELEKVMEGQAFRQFTDKEKIE 169
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: I1HT16_BRADI (HIT-type domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HT16_BRADI) HSP 1 Score: 66.2 bits (160), Expect = 1.230e-9 Identity = 53/186 (28.49%), Postives = 87/186 (46.77%), Query Frame = 2 Query: 44 IGAETCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCSGKRARPEDAKNAQLAISPEATTGDPLAEKRLRTDGADG-PSGSNATVGSSADAGAGAPAPCVRKSRDQWRGGKLEDDAEEEWAMSADQRARISQCTWLKAALRDPKLQGLLTEIDRAEDREKALAFHRTNPQFGEFMDKLL 598 +G +C VC+E PSKY+CP C PYCS+ C K HK K P++ K ++ + E L E + + D PS T S+ + C KS + +ED + W + ++ +++ ++ AL+DP+L L+ +ID + + EK L P F +F +K+L Sbjct: 1 MGGGSCDVCKEAPSKYKCPTCRTPYCSVTCFKKHKGEFCQK-------IIPQEEKISKSPLEEEVARSSVLLEDGISSGDKDQLPSLPPDTTCSTLSPNT--VSVCSTKSLE------VEDPS---WLVDRNRLRSLAESNEIQDALKDPELHKLVLQIDGSSEPEKELEKLLEEPAFQQFTNKIL 168
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: A0A3B6GWF3_WHEAT (HIT-type domain-containing protein n=22 Tax=Triticinae TaxID=1648030 RepID=A0A3B6GWF3_WHEAT) HSP 1 Score: 65.5 bits (158), Expect = 2.800e-9 Identity = 54/191 (28.27%), Postives = 86/191 (45.03%), Query Frame = 2 Query: 44 IGAETCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCSGKRARPEDAKNAQLAISPEATTGDPLAEKRLRTDGADGPSGSNATVGSSADA------GAGAPAPCVRKSRDQWRGGKLEDDAEEEWAMSADQRARISQCTWLKAALRDPKLQGLLTEIDRAEDREKALAFHRTNPQFGEFMDKLL 598 +G +C VC+E PSKY+CP C PYCS+ C K HK K P++ N + ++ E TT L EK G D P+ + S + A C +S + K + + W + ++ + + +K ALRD +LQ ++ +ID + + EK L F +F +K+L Sbjct: 1 MGGGSCDVCKEAPSKYKCPTCRTPYCSVICFKKHKVEFCQK-------IVPQEETN-KPSLQEEVTTSSVLLEK-----GTDYPNIKDQLPSLSKNPDEDQLPSLAADTTCPAQSPNXXXXTKALEVEDPSWLVDRNRLRSLVELNEVKDALRDSELQKMILQIDGSSEPEKELEKLMEGQAFQQFANKIL 178
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: A0A433PTY6_9FUNG (HIT-type domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PTY6_9FUNG) HSP 1 Score: 62.8 bits (151), Expect = 1.070e-8 Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 2 Query: 56 TCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCSGKRARPEDAKNAQLAISPE 235 TCGVC +NPSKY+CP C +PYCSL C K HKA K+ + +D ++ A++P+ Sbjct: 9 TCGVCLDNPSKYKCPNCILPYCSLPCYKKHKATVTSKNDTTASTPSEDD---SETALNPD 65
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: A0A5J9STR4_9POAL (HIT-type domain-containing protein n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9STR4_9POAL) HSP 1 Score: 63.2 bits (152), Expect = 1.500e-8 Identity = 52/183 (28.42%), Postives = 79/183 (43.17%), Query Frame = 2 Query: 56 TCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCS--GKRARPEDAKNAQLAISPEATTGDPLAEKRLRTDGADGPSGSNATVGSSADAGAGAPAPCVRKSRDQWRGGKLEDDAEEEWAMSADQRARISQCTWLKAALRDPKLQGLLTEIDRAEDREKALAFHRTNPQFGEFMDKLL 598 TC VC+E PSKY+CP C PYCS+ C K HK P GK + PE+ ++ L+ GAD + + D C KS K + + W + + I++ ++ A+RDP+LQ ++ +ID + + EK L F +F DK+L Sbjct: 5 TCSVCKEAPSKYKCPSCRTPYCSVICFKNHKDTCQKTLPQEEIGKSSHPEEVTHSS----------------GLQEGGADLLNNKDQQSSLPPDM------VCPVKSPHVLCPTKALEVEDPSWVVDNKRLRSIAELNEIRDAVRDPELQKMILKIDGSSEPEKELEKLMEGQAFRQFTDKIL 165
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: UPI0015C3EA39 (HIT zinc finger n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C3EA39) HSP 1 Score: 61.6 bits (148), Expect = 1.030e-7 Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 2 Query: 50 AETCGVCRENPSKYRCPGCTVPYCSLACNKAHK 148 + TCGVC +NPSKY+CP C +PYCS+ACNK H+ Sbjct: 38 SSTCGVCEKNPSKYKCPRCYLPYCSVACNKIHR 70
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Match: A0A6P8ZM24_THRPL (Zinc finger HIT domain-containing protein 3 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZM24_THRPL) HSP 1 Score: 60.1 bits (144), Expect = 1.190e-7 Identity = 27/61 (44.26%), Postives = 34/61 (55.74%), Query Frame = 2 Query: 59 CGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCSGKRARPEDAKNAQLAISPEAT 241 C VC SKY+CP C +PYCSLAC K HK+ DK P + P + N + +P AT Sbjct: 3 CKVCNSAVSKYKCPSCRIPYCSLACWKTHKSVECDKVPATPSTITPAEPSNTVIPETPAAT 63 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11939.1235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11939.1235.1 >prot_H-paniculata_contig11939.1235.1 ID=prot_H-paniculata_contig11939.1235.1|Name=mRNA_H-paniculata_contig11939.1235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp MGKIGAETCGVCRENPSKYRCPGCTVPYCSLACNKAHKAGTADKSPCSGKback to top mRNA from alignment at H-paniculata_contig11939:4938..6364- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11939.1235.1 ID=mRNA_H-paniculata_contig11939.1235.1|Name=mRNA_H-paniculata_contig11939.1235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-paniculata_contig11939:4938..6364- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11939:4938..6364- >mRNA_H-paniculata_contig11939.1235.1 ID=mRNA_H-paniculata_contig11939.1235.1|Name=mRNA_H-paniculata_contig11939.1235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig11939:4938..6364- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |