mRNA_H-paniculata_contig11917.1227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11917.1227.1
Unique NamemRNA_H-paniculata_contig11917.1227.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11917.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11917contigH-paniculata_contig11917:4131..4944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size307
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11917.1227.1prot_H-paniculata_contig11917.1227.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11917 4194..4944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928908.2737634-UTR-H-paniculata_contig11917:4130..41931622928908.2737634-UTR-H-paniculata_contig11917:4130..4193Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11917 4131..4193 -
1691480663.0003257-UTR-H-paniculata_contig11917:4130..41931691480663.0003257-UTR-H-paniculata_contig11917:4130..4193Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11917 4131..4193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928908.291377-CDS-H-paniculata_contig11917:4193..42751622928908.291377-CDS-H-paniculata_contig11917:4193..4275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11917 4194..4275 -
1691480663.014643-CDS-H-paniculata_contig11917:4193..42751691480663.014643-CDS-H-paniculata_contig11917:4193..4275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11917 4194..4275 -
1622928908.3124871-CDS-H-paniculata_contig11917:4783..49441622928908.3124871-CDS-H-paniculata_contig11917:4783..4944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11917 4784..4944 -
1691480663.0326493-CDS-H-paniculata_contig11917:4783..49441691480663.0326493-CDS-H-paniculata_contig11917:4783..4944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11917 4784..4944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11917.1227.1

>prot_H-paniculata_contig11917.1227.1 ID=prot_H-paniculata_contig11917.1227.1|Name=mRNA_H-paniculata_contig11917.1227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
KRYSRDPILRPSGTEELVAHFKSNQIPGTRVKTCKSGNTTQDLPPHVKLI
LSDSRLLAYASGGRRHARIFPRRGPPYTSS*
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mRNA from alignment at H-paniculata_contig11917:4131..4944-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11917.1227.1 ID=mRNA_H-paniculata_contig11917.1227.1|Name=mRNA_H-paniculata_contig11917.1227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=814bp|location=Sequence derived from alignment at H-paniculata_contig11917:4131..4944- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGATACAGCCGGGATCCTATCTTGAGGCCATCCGGAACGGAAGAACT
TGTTGCCCATTTTAAAAGCAACCAGATTCCAGGAACGCGGGTCAAGACTT
GCAAATCGGGAAACACTACACAAGATCTTCCGCCACACGTGAAACTTATA
TTGTCAGATAGGTATGTTGGAAAATGGTGAAAAACTCCTGAAAGTCTTAT
TCATGTAAACAGAGAAACAATGAGAGGCGGTTCAGGTGGACGAGGTGAGG
AGGGGGGGCGGGGTCACTACTGAGTGACCTATCCTCAACTGGTTCAAATG
AATCAGGGGAGGGTCAGTTGGATCTACTTCGCAGATCTACACAGCACGAA
AGTATCTGCACCCATTAAGTTGAAGCGCTGTTTTGGAATATAATAATATA
CAAGCGAGAACATTGCTTCCAGCAAACATGGGAAAACATCAAACATTAGG
TGCTCGAACCGTGAATTTCCCCCCACAATCAGGAAATAATCAGCTTTATT
CCGAAGGTACCGTGATCACTCTGATAAATTATCAACGATTCCAAGATAAA
AAGAAAGAATGGGGGCGTTGCTATCAATTTGTTTCAAAACGTTCGGGGGT
CTGTCTTTCTGGCTCACTTGGTCATCATTATTGCCGTCATACTCTCTTCC
GTCCACGATGACCTTGCAGTCGCCTTCTTGCATACGCATCAGGAGGCCGA
AGGCACGCTCGAATTTTTCCCCGCCGAGGCCCTCCGTACACTTCTTCGTG
AGGACCTACAATGTCGTGAAGCGGGCATGCGGTGTTGGAGAGTGGTGCCC
GCGGGGGCGGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11917:4131..4944-

>mRNA_H-paniculata_contig11917.1227.1 ID=mRNA_H-paniculata_contig11917.1227.1|Name=mRNA_H-paniculata_contig11917.1227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig11917:4131..4944- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGATACAGCCGGGATCCTATCTTGAGGCCATCCGGAACGGAAGAACT
TGTTGCCCATTTTAAAAGCAACCAGATTCCAGGAACGCGGGTCAAGACTT
GCAAATCGGGAAACACTACACAAGATCTTCCGCCACACGTGAAACTTATA
TTGTCAGATAGAAGAGATACAGCCGGGATCCTATCTTGAGGCCATCCGGA
ACGGAAGAACTTGTTGCCCATTTTAAAAGCAACCAGATTCCAGGAACGCG
GGTCAAGACTTGCAAATCGGGAAACACTACACAAGATCTTCCGCCACACG
TGAAACTTATATTGTCAGATAGTCGCCTTCTTGCATACGCATCAGGAGGC
CGAAGGCACGCTCGAATTTTTCCCCGCCGAGGCCCTCCGTACACTTCTTC
GTGATCGCCTTCTTGCATACGCATCAGGAGGCCGAAGGCACGCTCGAATT
TTTCCCCGCCGAGGCCCTCCGTACACTTCTTCGTGA
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