mRNA_H-paniculata_contig11906.1221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11906.1221.1
Unique NamemRNA_H-paniculata_contig11906.1221.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11906.1221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11906contigH-paniculata_contig11906:2031..3935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size235
Cds size126
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11906.1221.1prot_H-paniculata_contig11906.1221.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11906 2140..3935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.5696738-UTR-H-paniculata_contig11906:2030..21391622928907.5696738-UTR-H-paniculata_contig11906:2030..2139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11906 2031..2139 -
1691480662.6136813-UTR-H-paniculata_contig11906:2030..21391691480662.6136813-UTR-H-paniculata_contig11906:2030..2139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11906 2031..2139 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.5806503-CDS-H-paniculata_contig11906:2139..22171622928907.5806503-CDS-H-paniculata_contig11906:2139..2217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11906 2140..2217 -
1691480662.6238716-CDS-H-paniculata_contig11906:2139..22171691480662.6238716-CDS-H-paniculata_contig11906:2139..2217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11906 2140..2217 -
1622928907.5923705-CDS-H-paniculata_contig11906:3887..39351622928907.5923705-CDS-H-paniculata_contig11906:3887..3935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11906 3888..3935 -
1691480662.633202-CDS-H-paniculata_contig11906:3887..39351691480662.633202-CDS-H-paniculata_contig11906:3887..3935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11906 3888..3935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11906.1221.1

>prot_H-paniculata_contig11906.1221.1 ID=prot_H-paniculata_contig11906.1221.1|Name=mRNA_H-paniculata_contig11906.1221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
RIGCGARTFRVPAFWEGTSGCFGSKIVQERQYRGDGRRRHQ*
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mRNA from alignment at H-paniculata_contig11906:2031..3935-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11906.1221.1 ID=mRNA_H-paniculata_contig11906.1221.1|Name=mRNA_H-paniculata_contig11906.1221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1905bp|location=Sequence derived from alignment at H-paniculata_contig11906:2031..3935- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATAGGCTGTGGAGCGAGAACTTTTAGAGTGCCAGCTTTTTGGGAGGT
GAGATGTTACTCGTGACTGGGGAACTCTTGACGCAAGCTTACTAGGTCAA
CATTATATTCATTTAAATGTGGTTGAACAATGGAAGATTTTTCCGTTGGG
GAAATTTGTATTTCGTGCCAGCAGAAGAATTTCGTGATCGGCTCACAAAC
AGTGTGTGTGTTCACTTTTAATCACGTTTACAATGAAAGTCACTTGTTGA
ACGCGTTGATCTAGTGTACATGACGGAACTGGTACCTATACAGGAGTTTT
TCGAGTACAAGACTGGTGTTCGACCGGGACATGAGAAGAGTCTAAGTGTT
CTTTTCGTCAGTGGAGTATGACAACATTAGTAGCTGCTTGACATCACCGG
AGTACTGGGCTGCCATGACACGCATCGTTTCCCTACCCGCTCGTCGATAT
TTTCCAAGAGTGTCATCGAGTGAACTGTTTTGAAATTAAGTGGTTGGTAG
CTGGTCGAGGTGAACGTTACATCAGCGTATGCGATGTATGCTGTGTCTCA
TTCGGGTTGGTCGACACGTTCCGGATATATGTCGGGAATTTTGGCTAGCA
GTGGCCTCTGGCCGTATAAGTTGGGTTTCCTGATTTGTAGCCAGTACCTC
CACAGGGGAAAAGTGCACTTCGGTATGACCCCCTCGACGTTTTCCGTCTT
GATTTCAGGGCCATCTGGTCCACAAAACTTCAAAGCTCCATCAGATTTAT
TTTGCCCCGGTTGCAGTTTTTCTGTCAATGTGCAGAAGTGAAGAGCTGAG
CGCGAAGTGTCAGCTGCCACTCGCATTGGTGTCATTCTGGTTGTTCCGAG
GTGACCACATGTTCCGTCCGTAGAGCTCTGCATGGATATGGTTCTAATCA
GTTCCAATATCTCCACGAATATCGGTCATGTGGGCTCTTGTGTGATGACC
ACAGTTGAATTGCAGATTATTTCAGAAACGTAGTTTTTGTCGTGCTACTA
TTAAGTACAGTAGTCTCACAACAACACGGCTGCGGTAGTGATATGCAGCC
CCAGGCAATTGTCTGGTCTTGCGTATTAGCTGGATGTTGTACCGTCAGGC
TCAACCATGAGTTGATACACATCTGACAGCTGATGGGGTGCTAACACGCA
GTGTGGTTGCCGCTCCCAGATCCATTTGAGGCTACATGATCCAACGCCGC
GGATTAGTGATGGCATCGTTACTTCAGACGGTGACCGCGACGTCCCGCAA
TCAATATCTCATGACACTTTAGTGCTCAGTCTGTTCAAGTAATAGATCGA
ACTTGTTCTCGAGCCCTTGTACATGTTGCAGGCGTGAGAAAAATCGGCGT
GGTTGTGTTACCACTAGAAGACTGGTATTCGCTATCCAATAAACCATCGC
GAGGAACTCGTACTCTCGCCACCTCTGATGCTCACCGTAACGTTGAACGT
AGTTTACCCGTGGCACTAGAGCCGGCGGTTATTCACTTGTGCTACGGTCA
CTTTCAAATATATTTCTTCCTCGACTGTAGACATTGGGAAACATGAGTAA
GACGTGGTGGTCTTGAACACCCGTACAGTTTCCGTCAAGTATGCGTGAGA
TGTTGCCGATTCTTTTGGGCATGATTTATGCGTGTCGTCGGAGGATCGAG
AGGTGAAAATAAATAAAGGCATGTACGAGTACCTTACTGTATCGCCCCCG
ACCTAAACTCTTCCGCAGGGGACGTCAGGTTGTTTTGGTTCAAAAATTGT
GCAAGAACGCCAATATCGAGGTGACGGAAGGAGACGTCATCAGTGAGTGG
ATATAGTGCTCGGCGTGTTGTAGCAGACCCCATTGTTGCTCCGTTATCCG
TATGTGGTAAGTTCTGTTTCCCTATATTTGTTTTTGAATGCTTAGCTGGA
AATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11906:2031..3935-

>mRNA_H-paniculata_contig11906.1221.1 ID=mRNA_H-paniculata_contig11906.1221.1|Name=mRNA_H-paniculata_contig11906.1221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig11906:2031..3935- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATAGGCTGTGGAGCGAGAACTTTTAGAGTGCCAGCTTTTTGGGAGCG
AATAGGCTGTGGAGCGAGAACTTTTAGAGTGCCAGCTTTTTGGGAGGGGA
CGTCAGGTTGTTTTGGTTCAAAAATTGTGCAAGAACGCCAATATCGAGGT
GACGGAAGGAGACGTCATCAGTGAGGGACGTCAGGTTGTTTTGGTTCAAA
AATTGTGCAAGAACGCCAATATCGAGGTGACGGAAGGAGACGTCATCAGT
GA
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