mRNA_H-paniculata_contig11900.1217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11900.1217.1
Unique NamemRNA_H-paniculata_contig11900.1217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11900.1217.1 vs. uniprot
Match: A0A6H5KL09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL09_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.970e-18
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = 3 
Query:    6 GAMDKFTEKSGVATDGGEGVTAKRTKKVMQTRTYTDGGYMKKINEEVEVTDDEEEPLKPSQANKSRVPTL-EKKSKSGHDSGCANGKAAAATANGSSGG-----KAKKAAKMSSGKQASMMSFFKKA 368
            GAMDKFT K         GV  KRTK V+++RTY +GGYMK +NEEVEVTDDEEE L+P++ N+SR P    KK+K G ++         A A G  G      K  KAA  S GKQASMMSFFKKA
Sbjct:  217 GAMDKFTAKGNGTGVDSSGVAVKRTKTVLKSRTYFEGGYMKTVNEEVEVTDDEEEALQPAKTNQSRTPPPGTKKAKIGVENKAEGSVETPAGAKGKDGATATKKKTAKAAPKSGGKQASMMSFFKKA 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11900.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KL09_9PHAE6.970e-1852.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11900contigH-paniculata_contig11900:270..6414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1043
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11900.1217.1prot_H-paniculata_contig11900.1217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11900 281..5742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928905.0989337-UTR-H-paniculata_contig11900:269..2801622928905.0989337-UTR-H-paniculata_contig11900:269..280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11900 270..280 +
1691480662.4052262-UTR-H-paniculata_contig11900:269..2801691480662.4052262-UTR-H-paniculata_contig11900:269..280Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11900 270..280 +
1622928905.2207608-UTR-H-paniculata_contig11900:5742..64141622928905.2207608-UTR-H-paniculata_contig11900:5742..6414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11900 5743..6414 +
1691480662.4356916-UTR-H-paniculata_contig11900:5742..64141691480662.4356916-UTR-H-paniculata_contig11900:5742..6414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11900 5743..6414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928905.1938808-CDS-H-paniculata_contig11900:280..4361622928905.1938808-CDS-H-paniculata_contig11900:280..436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11900 281..436 +
1691480662.4150841-CDS-H-paniculata_contig11900:280..4361691480662.4150841-CDS-H-paniculata_contig11900:280..436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11900 281..436 +
1622928905.2070363-CDS-H-paniculata_contig11900:5538..57421622928905.2070363-CDS-H-paniculata_contig11900:5538..5742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11900 5539..5742 +
1691480662.4228234-CDS-H-paniculata_contig11900:5538..57421691480662.4228234-CDS-H-paniculata_contig11900:5538..5742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11900 5539..5742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11900.1217.1

>prot_H-paniculata_contig11900.1217.1 ID=prot_H-paniculata_contig11900.1217.1|Name=mRNA_H-paniculata_contig11900.1217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MDKFTEKSGVATDGGEGVTAKRTKKVMQTRTYTDGGYMKKINEEVEVTDD
EEEPLKPSQANKSRVPTLEKKSKSGHDSGCANGKAAAATANGSSGGKAKK
AAKMSSGKQASMMSFFKKA*
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mRNA from alignment at H-paniculata_contig11900:270..6414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11900.1217.1 ID=mRNA_H-paniculata_contig11900.1217.1|Name=mRNA_H-paniculata_contig11900.1217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6145bp|location=Sequence derived from alignment at H-paniculata_contig11900:270..6414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGCGGGGCAATGGACAAGTTCACAGAAAAGAGCGGCGTGGCGACCGAT
GGGGGTGAGGGTGTGACGGCGAAGCGGACGAAGAAGGTGATGCAGACGAG
GACGTACACGGACGGCGGTTACATGAAAAAAATCAACGAGGAGGTGGAGG
TCACCGACGACGAGGAGGTACGGAATGGCAGAACGCGCGAGCTTTGATAT
TTTGTCGTGGCGGTAAAAAAATAAACAAGCACTCCACAGCTGCTGATGAT
AGGGTCAAAAGCTACTGAAGAGTTAATCGTTAATTTGAATGCTTTGAAAA
CAAATATGCGGCAAAGCGTCTGTTGACCGTGACTGCGCACACCGCCAACG
AGACCTCTCTCCGCCCCCCCTCCTTCCTTCGATTCTGCGGTCGAAATTAT
GAGCTCAAGGGGTTCGATTTGGTGGACATGGTTCAGGGTGCACAAACTAA
AACTGTGAAAGGAGTCAGATGTGGACACGATTACTTTTGCTTTGCTCTTG
CTTGTGGTTTCATAAGAAAGGCCGTGCCCACACAGCAGGGGGAAAACCCG
GCCGTCCCCCGCAATTGTCCACTCAGTTCACTCGTGATAACTTCTTACTG
TGGACGTACAAAACCAACTATACGGAAGCTAATGAGCGATACCATCGTGG
ATGAGGACAGTCTTACTACATTTTGAGGCAAAGGTTGTTTTGATATAAAT
AATACGTAAACCATGATTGTTTACTTTGATGCGGGCAATGTCGTAATAGT
GGTGGTCACGGAACAGGTTTGATGTAATTAGGTATGCTACTGGCCCGTCT
ACAGGTCGGTGGAGAGCGGGTTTTGAGCCACTGGCCCACTGACCTGCTAC
TAGTCTACCTAGTAGTTTACCTCAAGAGTCATCACCTATGGCTCCTACCT
CACTCTGAAGTGTCCTGTAAAGACTAGATTCTCAACGTACTCCATTTCCC
CTGGTGTGAGTTCCGACAACGGGGCTCTCTCTATGTAGAGCTCTGAAGAT
CCGGTGTAGTCAATATCGACTCGCGTGTGTTTGCCATCTTTTTCAAAACT
ACATTTGACACGCTGTTTTACGGTGGGGTGCAGTCCGGCTCCGTAGGTAC
GGCATCGCATGCGAGGTCTCTGCCGCATGGCTTTTTGTCTTTTTGTTAGG
ATTTCGTCGGAGTGGACTGCACATCATGTTTCAAACATGTTTCGAAGTCG
AAGTCACTAGTGTTCAGTGGAGCTCACAACTCAGCCTTTTCCCTTCCAAG
TGTTTGATTTGTTGACTTCACGCTTCATGTGCGTACTTAACAAACATCTT
CAACTCATCTTCTCTAAGAAAGCTAACCTTGATGACTTGGAGATGCCGTC
AGGTATTCATTAGTGTACAAAGTTTTTTTTTTTCACCTTGGACGTTTGTT
CACCAAGAGTGCGGGATAACGAGGTGAAGAATGACTTTTCCTAGGAAATT
TCTACCGTACCACCGTCGTTGAAGATTTCCGCAAACAAATTAGAGAGGAG
CTTCGACAGAATAGGGTGTGATGTGCACAGATTTACTCAAGAGATACATT
TTCGTGTTGAGAGACTTAGATTCGCGGGTAGGAAAAGCTGACCGCGATGG
GCAAGTAGTCGGACGGTACGGAGAAGAGACTGTTGATGAAAAGTGACTGT
TGATGAAAAGTGACTGTTGATGAAAAGTGACTGTTGATGAAAAGTGACTG
TTGATGAAAAGAGACTGTTGATGAAAAGAGACTGTTGATGAAAAGTGACT
GTTGATGAAAAGTGACTGTTGATGAAAAGTGACTGTTGATGAAAAGTGAC
TGTTGATGAAAAGTGACTGTTGATGAAAAGAGACTGTTGATGAAAAGAGA
CTGTTGATGAAAAGTGACTGTTGATGAAAAGTGACTGTTGATGAAAAGAG
ACTGTTGATGAAAAGAGACTGTTGATGAAAAGTGACTGTTGATGAAAAGA
GACTATTGATGAAAAGTGACTGTTGATGAAAAGAGACTGTTGATGAAAAG
AGACTGTTGATGAAAAGTGACTGTTGATGAAAAGAGACTGTTGATGAAAA
GTGACTGTTGATGAAAAGAGACTGTTGATGAAAAGTGACTGTTGATGAAA
AGAGACTGTTGATGAAAAGAGACTGTTGATGAATAGTGACTGTTCATGAG
AAGGGAAAGGGATGTTTGCATTCTTGGAAGGTAACGAGTTGATGGCAATG
AAAAGCAGAAGAAAACGCGAGATACCAGAGTGCACTAGGAAGAGGGCAGC
CCAGAGTCACATCTCAATTCTTGTTTTTGTATTATGATTGTGACAGAGGG
AGTATGAAGCCAGACGTGCTCAGCGTGTTTGCATCTGATATTAAGACAAC
GTATGATTGCCTACTATGGGCAGACATGAGCAGGGATTGTACAGTAGAAC
AAGAGACTACGATAAAACTACTTAGTGGAGTAGAGTGCAGAAAATAAGAG
GAAATGCGCAAGGTATTCCAAAAGGAAATGATCGAGGTTTAGAGAACGGG
TCGAGGCAGTGTTGAGGTATTGAGGAAGACAAGATAATATGGCAAGTAGT
AGGGCACAACAGGGTGATGAAACCTCGGGAAAACGCAGTAAATGTAGCCA
CCGTCATTGGTCACAAAAAGATTGTATGTGGTACGCCAAAGTGTGGGTAA
TGGATTGAGAGGAATGGTAAAAGAGAACAGAGATACTCATAATAAACGCA
GAAGTGATACATCGGTCAAGACTTGAAAAGAGTATCAAGCCAAGAAGAAA
CGAGTTCCAGACGCAATGGCAATAAAGAAAAACGAGAGCGTGGGATGGAG
TAATGCAGAAGGTTAACAAAGATGTGAAGGGCGACTAAGGCAGACGTGGC
AAGGGATAAATGGAATGACAAGGAAGAGCGGGGAAGAGGGGAAGACAGTG
GTGGCCACGCTTCGAGCGGTAGACGGAAGACTAAGGAGTGGCGGAGAGGG
CGAGAGAGAGGCACTAGGAGGACACCACAGGAGACGGGAGATTCCCTTGG
AGAACACTACGTTAATGAGGCATTTAAGGAAGAGGTGGACGGCTGGGTTG
AAAGAGAGGAGGTTAAATAACACCTGTGGAGCCGAAGAGCTTCGAGGAGG
CTTCAGAACTCACGAGGATTAGAAACAAAAGCATAACTAGACTCCAGAGC
CACAATGCAACAGGAGGCAGATGGGATCGTAAAATAATTAATGATGTTTG
GGGATGAAGGGATGGGTGAAAACTATGGCACTGCTGTACATGTGGGTGTA
GAAGAATGAACACGCGCCGAGTAGATGAAGGGAAGGGGTGGTTGTAATCT
TGTTTTAGAAACGGGATGAAACAGGCCGGGGTGACTACAAAGGTATTACG
CTTCTGATTAGAGTAGGAAAGGTGTTTTACAAACTCTTGGATGGCGGAAT
AGTTGGAAAAGGAACGTGAGACCAGCAAGGGTCAAGGAAGATTCCGACGT
AACGGGTTGCGTAGATCACCCGTATACATTCGGGAGAATTATTGGGATGG
GAAGAGGGCGCGGTTGAAGACGCACTGTTTCTGCACGTGAAAGAAAGCGT
ATGCCAGCGTCGGGAGGAATGGACCGTGGAATTAGATTTCAAATTACGGG
ATAAATGGGAATGTGTAGAGAATGCTGCAAATTATGGCGGAATGTGCTGT
TAGTGCTGATATGCTCGTTCGGGAGCTGTCCGACTTTTCGTTTTTTTTTT
GTTTTTTTTTTACACGGCGTCCTGCAAGGATCTATGTTTTTTTCCCTACA
CTTTTCCAGGTGTTTATTGATGATGAATTGAAAGTAGTGGAGGCAATAGG
GCAAAGGAGTGTAAGTAGGATCTAGTGATATATCTGGACTATTGTTTCCA
AAGGATTTCAAGGGAATGTTTGCTACTCCGGGGGAAAACTGCGAAGTCAG
ATTGGCGCAGCGATGTAATTTGCTAGGAAGTCGAGACTTCAGCAAATTTC
GAGAGCTGTGCCGTAATCGTATGCAACTAGATTAGGGTGGATCGGAACAT
ATATCTCGGGGCTGGGTTCTCGAAGGGTTGTAAGTGGGATGTATATATGA
AGAAAGTAACCGAAGAAAGGAATTTTTGGATAGGAAGCCAGGCCGACCGG
CATCTTGACACACGTATCAAGACACCTTTTTTTTTTTGTCAAGAGGGTTT
TTCATTCCGCCATTATGATACGCAGTGACACTATGGGCAGGAAATCAAAG
GGCAACCAAGGAGTTGGAATTAGTTCAAATAAAAGCATCGAAGGTGATAC
TGGGATGTCAGCAGCGCACCAGCAATGCAGGGGTAAGGGCAGGTTGCGCT
TGCACTCCCTGAAAACTGGGAGAGATGCAAGAAAACTCGAGTGACCGTAC
AGGCTGCAGAAAATAGGGGGGGCGTGAGACTGTCAAAATTTGCAAGAAAA
GCAAAATGGGGATCAATTCAAAATGGTAGTAGACCCAATGAGTGGATTAT
CGTTTAGACAAAGTGTGGAAAAAGCTGGAAATATCCGAGGAGGAAACGCT
GAAGAGTAATAGTATGGACGGGTTTGAGGAGATAATGGCGGGTGCGAGTG
CAATCAGAGAAAAACAAGAACTGAAAAGAGAAGCTGCGAGTGATGAACGC
CTGGAAGTGACCAAAGGGTCAATAAAGGGATAGGGTTGAAGTGATACTTC
ATGGGGTCATATTGATGAAGGGGAAGGTTGACCTCAAGGAACGTAGAAAA
CGGTCCAGGAGGGTTGATGAGGAGAACGGTGCGATGTTGATGTATGACTG
CAATAATGCGTGCGAGGATCAAATTCAGATGGTAGCAGAATGCCCCTTGT
ATGACAAAAAGAGAGAAATGTATACGACTGACTTGGGGTAAAATTAAAGG
GTGTGATGGAGAGGGACCTTCGAATCATCCTGGTATTGCGAAAAGAAGGC
GATAGCGGTTCTAGGAGATCGAAATCGGCCGGAAAAGCCGAGTGATGAGG
TAGATGGGGTAAGTATAACATTTTCGAGCCTCATTTGGTAACGTAGGAAA
GAGCGATTAGCCGTCGGCAATGGGTCCGGAACAGAGCTCAGTCCTGCCGA
ACATGCAGGTTCAATGGTCTAACAGTTAAGACATGCAAAAGATGAGCCCC
CCCCCCCGCGCATCCCCCTCCACTGTCAATGGTGCAACAACTGGGGCATG
CAAAACGGAAGTATTCCTACCGCCTCCACACTCGTCTTCCCCCTCACCTA
TAAAGGGTGTAACAAGTGAGGCATGTAATGCATGAGCAGCCCCCCCCCTC
CCCGTGTTGCCCGACGCAGGAGCCGCTAAAGCCTTCGCAGGCCAACAAAA
GTAGAGTTCCAACGCTGGAGAAAAAGTCTAAGAGTGGACACGACAGTGGC
TGTGCCAATGGCAAGGCGGCTGCCGCTACTGCTAACGGAAGCAGTGGGGG
AAAGGCCAAGAAGGCTGCGAAGATGTCGAGCGGGAAGCAGGCCAGTATGA
TGAGTTTCTTCAAGAAGGCCTGATACAGAGGGGGTACTATATCGGAGCCA
AGCCCCGTCATGGCTTTCGCGCTGGAGGGGCGTGTTTTTGGCTTCTTTTT
TTTTAAATAGTGGTTGGTTGCTCGAATCTGCCCCCCTTCCCCCCCCCCCC
CTCCCCTCCGCTCTGTGTTGATGTGTTTTTTGTGCAACCAGTAACTCTGG
TTTGAAACCCTTGGCAGCTTCCTGGGACATTGACACTGCAGTCCCATGCG
GCAAACGCCATGCTATCTGTAACACAGACGAGGTGTTGTTCTCGGGCGCT
TTGACACGGTCGTTGATTATTTTGTAAACGGGTGCGACTACCACATCTCT
AGGGGTCTAGATGTTTTCTTTGCAGCAGTGTTTTTATCGCTGATTCCCGA
AGCCCCTTCCGACATTACGTCACGATCGCTAGGTACATATATGACGGAGA
TCGTTTATATGCAATACCGGCGCTTGTTTCGATACCTCGTTGATACTTGG
ACCTCTCGCCGTCCAACTGAGGATTTTTACTTTGGTGTGAACACGTGCGT
TGTTGTCCAACCCTGTTGAGTTACGAATTGTTGGTGTGGCGATCAGTAGG
TGATTTTGAAAACGTGGGCGTCCGAGTGAAAATGTCGAAAGCCAACAGGA
AATCGGGAGAACGGGAGGGGGGATGTTTAGCTGCATTGCAGATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig11900:270..6414+

>mRNA_H-paniculata_contig11900.1217.1 ID=mRNA_H-paniculata_contig11900.1217.1|Name=mRNA_H-paniculata_contig11900.1217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig11900:270..6414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAGTTCACAGAAAAGAGCGGCGTGGCGACCGATGGGGGTGAGGG
TGTGACGGCGAAGCGGACGAAGAAGGTGATGCAGACGAGGACGTACACGG
ACGGCGGTTACATGAAAAAAATCAACGAGGAGGTGGAGGTCACCGACGAC
GAGGAGATGGACAAGTTCACAGAAAAGAGCGGCGTGGCGACCGATGGGGG
TGAGGGTGTGACGGCGAAGCGGACGAAGAAGGTGATGCAGACGAGGACGT
ACACGGACGGCGGTTACATGAAAAAAATCAACGAGGAGGTGGAGGTCACC
GACGACGAGGAGGAGCCGCTAAAGCCTTCGCAGGCCAACAAAAGTAGAGT
TCCAACGCTGGAGAAAAAGTCTAAGAGTGGACACGACAGTGGCTGTGCCA
ATGGCAAGGCGGCTGCCGCTACTGCTAACGGAAGCAGTGGGGGAAAGGCC
AAGAAGGCTGCGAAGATGTCGAGCGGGAAGCAGGCCAGTATGATGAGTTT
CTTCAAGAAGGCCTGAGAGCCGCTAAAGCCTTCGCAGGCCAACAAAAGTA
GAGTTCCAACGCTGGAGAAAAAGTCTAAGAGTGGACACGACAGTGGCTGT
GCCAATGGCAAGGCGGCTGCCGCTACTGCTAACGGAAGCAGTGGGGGAAA
GGCCAAGAAGGCTGCGAAGATGTCGAGCGGGAAGCAGGCCAGTATGATGA
GTTTCTTCAAGAAGGCCTGA
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