mRNA_H-paniculata_contig119.1215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig119.1215.1
Unique NamemRNA_H-paniculata_contig119.1215.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig119.1215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig119contigH-paniculata_contig119:48215..48987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size773
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig119.1215.1prot_H-paniculata_contig119.1215.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig119 48478..48870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.946585-UTR-H-paniculata_contig119:48214..484771622928900.946585-UTR-H-paniculata_contig119:48214..48477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig119 48215..48477 +
1691480661.7853184-UTR-H-paniculata_contig119:48214..484771691480661.7853184-UTR-H-paniculata_contig119:48214..48477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig119 48215..48477 +
1622928901.011521-UTR-H-paniculata_contig119:48870..489871622928901.011521-UTR-H-paniculata_contig119:48870..48987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig119 48871..48987 +
1691480661.8039937-UTR-H-paniculata_contig119:48870..489871691480661.8039937-UTR-H-paniculata_contig119:48870..48987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig119 48871..48987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.9633553-CDS-H-paniculata_contig119:48477..488701622928900.9633553-CDS-H-paniculata_contig119:48477..48870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig119 48478..48870 +
1691480661.796745-CDS-H-paniculata_contig119:48477..488701691480661.796745-CDS-H-paniculata_contig119:48477..48870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig119 48478..48870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig119.1215.1

>prot_H-paniculata_contig119.1215.1 ID=prot_H-paniculata_contig119.1215.1|Name=mRNA_H-paniculata_contig119.1215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MHYYTPRSTTGRLHHLPVLSTTIDNAFYYCTIIATLTCITTTNISYPYQN
AISCKTLKTNFLTLMKRSAKGEFTLPPMRLTAKVVLDITRRGHPFPIKKT
ISATICMYTSKMITSLVSKLLRTLWPPNQP*
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mRNA from alignment at H-paniculata_contig119:48215..48987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig119.1215.1 ID=mRNA_H-paniculata_contig119.1215.1|Name=mRNA_H-paniculata_contig119.1215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=773bp|location=Sequence derived from alignment at H-paniculata_contig119:48215..48987+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCGACACACACACATCCTATTATACTAAAATGCGACATGCCCCCACGC
ATCCCTTTAGAAGTGCATAATGCACGATTCGAAGTGGTGGCACTGTTCAA
GGGAGGGAAAGATATCTCGTCGAGCCGCTTCCAGGAGCGGCTCAAAACGT
TGACGAACTAATGGGCTCGAAATTCCCTCTATCTTACCACCGTCTTAATA
ATTTAGCTCTCCCCGCCAAGCACCCCACGCCCCGACACACACACAGGTAC
CTTTAATAAGTTAATGCACTACTACACACCACGAAGTACTACAGGTCGAC
TGCACCACTTACCAGTACTCAGCACCACTATTGACAACGCATTTTACTAC
TGCACTATAATAGCTACATTGACATGCATTACCACGACAAATATTTCATA
CCCATATCAAAATGCAATTTCCTGCAAGACCTTGAAGACTAATTTTCTTA
CGTTGATGAAGAGAAGTGCGAAAGGCGAGTTTACGCTACCACCAATGAGG
CTGACAGCAAAAGTAGTGCTGGACATAACAAGACGAGGCCATCCCTTTCC
CATTAAAAAAACTATTTCGGCTACAATATGCATGTACACGAGTAAGATGA
TAACTTCGCTGGTATCTAAACTCCTCAGGACGCTCTGGCCTCCTAATCAG
CCGTGAAATGCTTATTTGTTATTGACCATTACAAAAAAAAACGGTGCTTG
CCCGTTCTCACTTTGAACTAAACCCAAGACAAAGCCCTAAATGGCAAAAG
CAAGTCTCTTTCGCACATGGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig119:48215..48987+

>mRNA_H-paniculata_contig119.1215.1 ID=mRNA_H-paniculata_contig119.1215.1|Name=mRNA_H-paniculata_contig119.1215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig119:48215..48987+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTACTACACACCACGAAGTACTACAGGTCGACTGCACCACTTACC
AGTACTCAGCACCACTATTGACAACGCATTTTACTACTGCACTATAATAG
CTACATTGACATGCATTACCACGACAAATATTTCATACCCATATCAAAAT
GCAATTTCCTGCAAGACCTTGAAGACTAATTTTCTTACGTTGATGAAGAG
AAGTGCGAAAGGCGAGTTTACGCTACCACCAATGAGGCTGACAGCAAAAG
TAGTGCTGGACATAACAAGACGAGGCCATCCCTTTCCCATTAAAAAAACT
ATTTCGGCTACAATATGCATGTACACGAGTAAGATGATAACTTCGCTGGT
ATCTAAACTCCTCAGGACGCTCTGGCCTCCTAATCAGCCGTGAATGCACT
ACTACACACCACGAAGTACTACAGGTCGACTGCACCACTTACCAGTACTC
AGCACCACTATTGACAACGCATTTTACTACTGCACTATAATAGCTACATT
GACATGCATTACCACGACAAATATTTCATACCCATATCAAAATGCAATTT
CCTGCAAGACCTTGAAGACTAATTTTCTTACGTTGATGAAGAGAAGTGCG
AAAGGCGAGTTTACGCTACCACCAATGAGGCTGACAGCAAAAGTAGTGCT
GGACATAACAAGACGAGGCCATCCCTTTCCCATTAAAAAAACTATTTCGG
CTACAATATGCATGTACACGAGTAAGATGATAACTTCGCTGGTATCTAAA
CTCCTCAGGACGCTCTGGCCTCCTAATCAGCCGTGA
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