mRNA_H-paniculata_contig11899.1211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11899.1211.1
Unique NamemRNA_H-paniculata_contig11899.1211.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 1.890e-113
Identity = 236/613 (38.50%), Postives = 338/613 (55.14%), Query Frame = 1
Query:    1 LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMELTGVVRISEQLETIQALLARI---SLSPPKLTALSMDAPRPKD--WHVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDG--ADRLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASG-GMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAEDTVVSNRNQENDACADTRIAILRAGFECLEAENSQSRWLYLALAVMPDDHAFEVYEAAVLLFG----HEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRMHNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGDGWRVSRPYNLAVSKLEISDSLFFPSVTVVANLYAAEGYYQGNRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAESFSRR-ALMV 1800
            LE CV A     AR S RG      K   D   +  L  R++ L   + L G+  +  +++ ++A+LA +   +  P  +   ++   +P +  WHV R  VVD VY+HL+  +   +VGLVG  GSGK+T AA IVG      R H  ET ++++    RVR  F DGVVWLRVGR G  A+R+PALM +LAK V+E +  S G  PG SP      G+A+  +   G G A    R LVVADDV + ++++ LR TGM VL T+RDP LVE  +G V+PV++L+K EA+ +L GAAE+   + LP AA  V++RC  +   +E V RW+ ++   DE  W  A + I+     +  E    + +  + D     R+AILRAGF  L A+N  +  LYL+LAVMPD  AF   EAAV LF        +     QA + VA LE+WA+VT  G  L+RMH+  S FAR  +    +V A  ++RWR   S L+ ++S+D + +++LW   E IGG+ WRVSRPY++A+  L  S     PS+  V      E  ++       R L +Q++A +  EH  V  TL  LI CA  +    +A++  R  +LMV
Sbjct:  138 LESCVNAAEDFIARCSRRGLCGRCTKASSDNDELLTLNSRVDSLTGDLGLAGIASLDAKVDDLKAMLAEVIAQNTMPASVPVAAVPNGKPVEHSWHVARDRVVDAVYEHLSCGQTPQVVGLVGRSGSGKTTCAASIVGESTG--RRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPT---GGGSAFISDFVRGKGSAAGRKRCLVVADDVWEVDILEELRHTGMWVLFTSRDPDLVERVEGSVVPVDQLSKAEAECLLRGAAELSTGSSLPSAAAQVIERCDRMANRLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGE---ANAQKSDEDLSGVKRVAILRAGFLDLAAQNGFNPLLYLSLAVMPDGRAFGAKEAAVFLFDDWAEERASQRRTRQAAKVVANLEQWAVVTMHG-NLFRMHDAHSDFARNKLKRSEDVRASALRRWRGFTSRLDTIRSMDYFEMVDLWHATEMIGGESWRVSRPYHVALDSLRDSSPECIPSLKAVVEFGINECAWEVTHDVALRLLRVQKDAAV--EHAEVRHTLESLIHCANALNLNSDADAHRRELSLMV 739          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 9.790e-99
Identity = 223/630 (35.40%), Postives = 330/630 (52.38%), Query Frame = 1
Query:    1 LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMELTGVVRIS------------------------------EQLETIQALLARISLSPPKLTALSMDAPRPKDWHVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDGADRLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAEDTVVSNRNQENDACADTRIAILRAGFECLE--AENSQSRWLYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRMHNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGDGWRVSRPYNLAVSKLEISDS-LFFPSVTVVANLYAAEGYYQG-NRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAESFSRR 1788
            LEDCV A+     R   RG  + V K   DK  I  L++R+  L   + L G+  ++                              E L   + +L ++   P K+  +    P  K WHV R  V + V+  L AD    +VGLVG  G+GK+TAA+ IV                     S  VR  F DG+VWL V     D LP LM +LA+ V+E +  S G  P  S     ++G AY ++    G  GKGL+ LVVAD+V + +V+  L +TGM +LL+TRD  LV+ A+G V+ V+ L++ EA++VL  AAE+  +ARLP  A  +++ CG V + +  V RW+ +R R D T+W+ AA  +    R    +  V +  N   D+  + R AIL+AGFE L   +++ + + LYL+LAV+PD HAF V +AAVLL+  E    D       V  LERW I+       YRMH+  S FAR +++ + +V    ++R    +S+LE ++S++ Y L  LW G++R+GGDGW  +RPY  A+  L+ S+S LF  ++  VA    A+  + G NRTW  R L+  EE  LG +H  V++T + L  CA     +EEA+ + R+
Sbjct:   94 LEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIV--------------------SSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQLAQMVFEDIGGSVGRRPSGS-----DDGLAYVKQQVENGHGGKGLKCLVVADNVWESDVVSQLLETGMWILLSTRDEELVKRANGEVVGVDELSEAEAESVLRRAAELSPEARLPDDAKDLIELCGRVAMDLAFVGRWSTVRGRQDRTAWSDAACKV----RAEMDKGGVTAESNGSEDSRVNRRRAILQAGFEDLAIGSDDERVQRLYLSLAVLPDGHAFTVKDAAVLLYDREPGTEDEASVGGVVEALERWTIIRSV-EATYRMHDAHSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGDGWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTGANRTW--RRLLAVEEVQLGADHPYVLNTYHCLARCAEHQDNVEEAKEWHRK 691          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 1.390e-96
Identity = 225/627 (35.89%), Postives = 320/627 (51.04%), Query Frame = 1
Query:    1 LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMELTGVVRISEQLETIQALL----------------------ARISLSPPKLTALSMDAPRPKDWHVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDGADRLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIP-VNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAEDTVVSNRNQENDACADTRIAILRAGFECLEAENSQSRW--LYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRMHNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVD-LYALLELWQGIERIGGDGWRVSRPYNLAVSKLEISDSLFFPSVTVVANLYAAEGYYQGNRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAESFSRRALMVL 1803
            L +CV A+     R S RG  + V K   DK  I GL+ R+E L   + L G+  +  ++E ++ALL                      AR+ +SP  L  +    P  K WHV R  V+  V D L  +    +VGLVG  GSGK+TAAA IV                     S  VR  F DG+VWL V     +RL ALM  LA+ V+E +  S G  P  + +D   +GAAYTR+    G  GKGL+ LVVAD+V ++ VI  L +TGM VLL+TRD  LV  A+G V+  V+ L++E+A +VL  A+E+  + RLP  A  +V+ CG V + V  V RW+ +R R D T+W+ AA+ +       +  D V   R       A  R A+L+AGFE L   +   R   LYL+LAV+PD HAF   +A  LL+       D     + +  LERW+ +   G G YRMH+  S FAR  ++ +  V    V+RW   LS+L+V++S D  + L  LW  + R+GG+ WR  RPY  A+S+++ S+ L   S+  +     A+G +Q      RR L ++    LG +H   + TL  L+ CA ++G  EE   +      VL
Sbjct:   80 LMECVNAVGAFVERCSRRGMLSRVLKATDDKEEIAGLKQRLEDLEGDLRLAGIATVGGKVEDLKALLEHVDTKQALSHSQTLANHDIMFARVGISPETLATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIV--------------------RSTEVREAFSDGIVWLSVNDGATERLRALMMHLARVVFEDIGGSVGRRP--AGLD---DGAAYTRQRMQSGHGGKGLKCLVVADNVWEEAVISKLLETGMWVLLSTRDEALVRSAEGGVVVGVDELSEEDAMSVLRRASELSPELRLPDEAVELVELCGRVAMDVAFVGRWSTVRGRSDRTAWSDAAHKVRSKIERSRVSDNVWDIR-------AVRRKAVLQAGFEDLAIGSDDERIPRLYLSLAVLPDGHAFTAKDATALLYDRAPCPEDEVSTEELIRTLERWSALRTEG-GAYRMHDAHSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWRNVRPYAAALSEMDESNPLLLKSLQSLGWFQDAQGDWQSASDTCRRILAVKRRQ-LGADHPHTILTLRALVYCAERLGNAEEMTEWQAELRRVL 672          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 3.470e-96
Identity = 217/605 (35.87%), Postives = 327/605 (54.05%), Query Frame = 1
Query:    1 LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMELTGVVRISEQLETIQALLARISL-------SPPKLTALSMDAPRPKDWHVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDGADRLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAEDTVVSNRNQENDACADTRIAILRAGFECLE--AENSQSRWLYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRMHNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGDGWRVSRPYNLAVSKLEISDSLFFPSVTVVANLYAAEGYYQGNRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAESFSRR 1788
            L+DCV+A +  A R S RG  + V K   DK+ I GL   ++ L   + L G+  +  +++ ++  L RI         S  KL A+ M AP  K WHV R   +  V D L   + + +V L G  GSGK+T AA IV                     S  VR  F DG+VWL V      RLP+LM +LA+ V+E +  S G  P  S      + A Y ++    G  G+ L+ LVVAD+V +++V+  L +TGM VLL+TRD  +V+ + G+ + V+ L++ +A++VL  AAE+P ++RLP  A  ++  CG V + V  V RW+ +R R D  SW+ AA+ I     ++  +     N + EN   A  R AIL+ GFE L   +++ + + LYL+LAVMPD HAF + +AAVLL+    +  D   A   V VLERW+I+  A  G YRMH+  + FAR  ++ + +V    ++RW  +LS+L++++S D Y L  LW  IER+GGDGW  +RPY  A+  +  SD+L   +   V     A+   +G    +RR L + E+  LG +H  V++T   L   A ++G +EEA  +  +
Sbjct:   94 LKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKKTLDRIDQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIV--------------------RSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQLARMVHEEIGGSVGRVPSAS-----EDSATYIKQRLEEGHKGRRLKCLVVADNVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAFVGRWSTVRGRHDPASWSDAASTIRTEMEKVGHDP---DNDSAENIP-AKRRKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSPSTEDEASAGGVVDVLERWSIIRSA-QGTYRMHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWGKTRPYEKALGMMLESDALLRTTAEAVGWFQEAQEDLEGASASWRRLLEV-EKRELGADHPFVLNTYGNLAIWAERLGNIEEAAKWHEK 667          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 7.010e-89
Identity = 219/624 (35.10%), Postives = 328/624 (52.56%), Query Frame = 1
Query:    1 LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMELTGVVRIS----------EQLETIQA------------LLARISLSPPKLTALSMDAPRPKDWHVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDGADRLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAE---DTVVSNRNQENDACADTRIAILRAGFECLEAENSQSRW--LYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRM---------HNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGDGWRVSRPYNLAVSKLEISDSLFFPSVTVVANLYAAEGYYQGNRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLE 1764
            +E+C++A   L  R   RG    V     DK  I  ++  I  L   + L GV  +           E++ T QA            ++ R+S +P KL  +    P  K WHV R  V++ V++ L A     +VGLVG  GSGK+TAA+       +++RS++             VR  F DGVVWL V     DRLP+LM +LA  + E V    G  P  S     ++GAAY +E    G  GKGL+ LVVAD+V +KEV+  L +TGM VLL+TRD  LV G++G V+ V+ +++ EA++VL  A+E+P + RLP  A  +++ CG V + +  V RW+ +R R D T+W+ AA  +     +I+ E    TVV  R+         R A+L+AGFE L + +   R   LYL+LAV+PD   F V +AAVLL+  + +  D   A   V +LERW+++     G YRM         H+  S FAR  ++ + +V    + RW  ++S+L+ ++SV  + + +LW G+E++GGDGW+ +RPY  A++ +E SD L   SV  VA     E  ++      RR L +     +GP  L V+ +L+ L    +  GRLE
Sbjct:  102 VEECLEAAGELVERCGGRGKMTRVLNASSDKEEIARMKANIRDLEADLSLAGVAILEGKTSDLTAMVERMGTNQAATQEMILANTESIIDRLSKTPAKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAAS-------EIVRSNE-------------VRQAFSDGVVWLTVNHGAKDRLPSLMLQLAHMMCEEV---GGRRPATS-----DDGAAYIKEKMQRGHGGKGLKCLVVADNVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAFVGRWSTVRGRSDRTAWSDAAGKVRAEMGKIEGERVSGTVVETRDAR-------RKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEASAAGVVEILERWSVLRSIR-GCYRMAWRGGHYVLHDAHSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGDGWKSTRPYEAALAGMEDSDPLLPTSVVAVAKFQRHEEDWEEAIATCRRLLDMPVTK-VGPYSLSVIRSLHELGLGYKHAGRLE 688          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 3.100e-86
Identity = 224/608 (36.84%), Postives = 324/608 (53.29%), Query Frame = 1
Query:    1 LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMELTGVVRISEQLETIQALLARISLSPPKLTALSMDAPRPKDWHVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDG--ADRLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERG----DETSWNRAANVIEHHFREIKAEDTVVSNRNQENDACADTRIAILRAGFECLEAENSQSRWLYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRMHNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGDGWRVSRPYNLAVSKLEISDSLFF----PSVTVVANLYAAEG-------YYQGNRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAE 1773
            L++CV  L+ +A R   RG  A +A++R D   I+ LR RIE +VP M L+GVV   E+L+ I   LAR+   P KL  +   AP  K +HVVR  VVD V   L  D    M  L G  G+GK+T+AA +VG                  E   RVRALFPDGVVWL VGR+   ADRLP+LM  LAKR++E V+     G  ++P    ++G +Y R+  S     + LR LVVADDV +  V++ LR+TGM VLLTTR P + E  + RV+ ++ L   EA+ VL GAAE+P   RL  A+  V++ CG V +    V  W  +R          +W R    +      ++ +   V N  ++ND  A  R+A+LRAGF+ +  E+  ++ LY+ LAV P+   F   +AAVLL   E        A   +++LERW ++       YR H+  + FAR+ ++ + ++    V+RW +H+S L+    V+++ LL +W+ +E +GG GW   RPY+  + ++  S+         +V VV NLY             +     FRR+L + EEA LGP+ + V  TL  L  C R+ GR  EAE
Sbjct:   95 LQECVDKLKEVAERYHDRGRLARLAQFRRDGEDIQRLRKRIEDVVPIMGLSGVVNNGEKLDQI---LARLQPGP-KLAPVPKKAPFTKSFHVVRDGVVDRVCKILGGDGGPAMAALTGGSGAGKTTSAAAMVG------------------ERGDRVRALFPDGVVWLWVGREAGTADRLPSLMSNLAKRLHEDVMK----GAVDAPTG--DDGVSYVRKIVSQ----EKLRCLVVADDVWEASVVQKLRETGMWVLLTTRFPEMGEPEE-RVV-MDTLIPAEAEDVLRGAAELPLGERLCDASMKVLEICGRVAMDTAFVGSWTSVRTTNGVPKSNKAWERTVEELTAQIDHVRGQ-MKVGNTGEDNDR-AINRLAVLRAGFKYIGREDPLAQELYVKLAVFPEGFLFGESDAAVLLENEE-------VAKGPISILERWGVLRTDASEKYRTHDAHADFARKKLMDRNDLREPAVERWTEHISRLDFAVGVEIFVLLPMWRALEEVGGKGWWALRPYDDQLIQMVTSNPATSYATSGAVGVVMNLYRGARKLGELAEIMKRVEPLFRRALEI-EEATLGPDDIQVAVTLQELGLCMRETGRPGEAE 658          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 1.770e-84
Identity = 199/556 (35.79%), Postives = 306/556 (55.04%), Query Frame = 1
Query:  163 RISEQLETIQALLARISLSPPKLTALSMDAPRPKDWHVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDGADRLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAEDTVVSNRNQENDACADTRIA----ILRAGFECLE--AENSQSRWLYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAV--LERWAIVTEAGPGLYRMHNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGDGWRVSRPYNLAVSKLE-ISDSLFFPSVTVVANLYAAEGYYQGNRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAESFSRRALMVL 1803
            RI E    I   + ++S +  KLT +    P  K W+V R  V+D V++ LA+D    +VGLVG  GSGK+T A+       + +RS +             V+  F DG+ WL V     +RL +LM +LA+ VYE +    GC  G  P    ++ AAY R+    G  GK L+ LVVAD+V +KEV+  L +TGM VLL+TR+ TLV  A G V+ V+ L++ +A +VL  AAE+P   ++P  A  +++ CG V + +  V RW+ +R R D  +W+ A + +     ++ + D         ++  A+TR A    ILRAGFE L   +++ + + LYL+LAV PD HAF V +AAVLL+  E   C  ++A  AV V  LERW ++  +  G YRMH+  S FAR  ++    V    V+RW   +S LEV++S D Y L  LW  +E +GGDGW  SR Y+ A+  ++ +  +L   ++  +A L  A   ++G  T +RR L ++++  LG +H  V+ +   L  CA ++G++ EA  +  + +  L
Sbjct:   11 RILENQSKILDHMDQLSKTQAKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDGGPRLVGLVGGSGSGKTTVAS-------ESVRSTE-------------VQEAFSDGIAWLSVNDGAKERLSSLMLQLARVVYEDI----GCSVGRRPTS-SDDCAAYIRQRMKKGTGGKKLKCLVVADNVWEKEVVSKLLETGMWVLLSTRNITLVTEAHGEVVGVDELSEADAMSVLRRAAELPPQGKIPGDAVDLIELCGRVAMDLAFVGRWSTVRGRQDRMAWSDAVSKVREEMGKVGSGDA--------SEKLAETRDARRKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDRE--PCAEDEASVAVVVDTLERWTVL-RSEQGAYRMHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGDGWLKSRAYSAALVGMDRLHSALARQNIIALARLQEAHEDWEGASTTWRRLLEIEKKQ-LGADHYHVLKSYRSLASCAEQLGQVGEAADWRGKEVEAL 529          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: A0A6H5KU40_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU40_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 7.730e-75
Identity = 205/595 (34.45%), Postives = 297/595 (49.92%), Query Frame = 1
Query:    1 LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMELTGVVRISEQLETIQA------------------LLAR------------------ISLSPPKLTALSMDAPRPKD-W----HVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDGAD--RLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAEDTVVSNRNQEND--ACADTRIAILRAGFECLEAENSQSRWLYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVT-EAGPGLYRMHNIRSAFARRAIVGQ------RNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGD-GWRVSRPYNLAVSKLEISDSLFFPSVTVVANLYAAEG 1626
            L +CV  L  L A  S RG  +      PD  VIE L  RIE LV  MEL   V +SEQ+  + A                  LLA+                  +    P   A    AP PK  W    HV+R  VV  V ++  +  + WMV LVG  G+GK++ A+ +       L  H              +R  FPDG+VW+R G+  AD  RL   M  LA  V+E V +  G  P  +    +   AAY +     G AG+GL+ LVVADDV + EV+  LR++GM+ L+T+RD  L E + G+ + ++ +T+EE   +L  AA++      P+ A  ++D C +V + +  V R +MLR + D T W RA N I     EI AE   VS+   + D  A +  R  I R G++   + + +++ LYL+L ++P+ +AF V +A++LLFG      D+E A   VA LERWA+V  E+  G YRMH+  S FAR+ +          +V  + V+RW  HLS L+ V S+D+  LL LWQ ++ +  D G RV R Y   +  ++ SD ++F     +A LY AEG
Sbjct:   62 LSECVDDLEALVADYSRRGLCSKFCN--PDSEVIEQLGKRIENLVHVMELAATVVVSEQVGGVNAAVEDLRRQLEINWARNECLLAKHETMLEECTKNIERGIKSVLQQLPAPQAERDQAPEPKGVWKPEDHVIRRHVVARVCEYFDSANSPWMVALVGRSGAGKTSTASEM------ALHYH--------------LRERFPDGIVWMRCGQGAADSARLARQMFILATWVHEDVENKLGISPSAAVAAAEGTAAAYIKTRMEQGNAGRGLKCLVVADDVWEPEVLDMLRQSGMKALITSRDYELTEASGGKAVVMDHVTEEEGMLILQKAAKLRSGESPPNEARKILDLCNYVAMELNFVGRLSMLRSQVDGTQWLRAWNEIRS---EIGAE---VSDPGGDFDDWAASKRRDVIFRVGYKDFGSGDVRNKILYLSLGILPNGYAFRVSDASLLLFG-ACQGRDMENAGDVVADLERWAVVRLESSDGTYRMHDAHSEFARKILTSALGLGFAADVRELAVRRWSAHLSCLKTVLSLDVGLLLSLWQAVDTVSCDVGIRV-RSYRAQLCSIDSSDEVYFSFAKTIAQLYYAEG 626          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 2.110e-70
Identity = 208/652 (31.90%), Postives = 314/652 (48.16%), Query Frame = 1
Query:    1 LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMELTGVVRIS----------EQLETIQA-----LLA-------RISLSPPKLTALSMDAPRPKDWHVVRHTVVDNVYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDGADRLPALMQELAKRVYEFVLDSKGCGPGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAED---TVVSNRNQENDACADTRIAILRAGFECLE--AENSQSRWLYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRM---------HNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGDGWRVSRPYNLAVSKLEISDS-----LFFP-------SVTVVANL------YAAEGYYQGNRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAESFSRRAL 1794
            +E+C++A   L  R   RG    V     DK  I  ++  I  L   + L GV  +           E++  IQA     +LA       R+S +P K   +    P  K WHV R  VV+ V++ L AD    +VGLVG  GSGK+TAA+ IV                                       R   DRLP+LM +LA  VYE +    G  P  S     ++G AY +E    G  G+GL+ L V D+V +KEV+  L + GM VLL+TRD  LV G +G V+ VN L++ EA++VL  AAE+P + RLP  A  +++ CG V + +    R + +R R D T+W++AA+ +     + + E    TVV  R+         R A+++AGF  L   +++ + + LYL+LAV+PD   F V +AAVL++    +  D   A   V +LERW+ +     G YRM         H+  S FAR  ++ + +V    + RW  ++S+++ +++V  + + +LW G E++GGDGW+++RPY  A++ LE SD      L  P       S++V+ +L      Y   G  +      R  LV+     LG  H+ V  TL  L  C R  G+  +A     R L
Sbjct:   76 VEECLEAAGELVERCGGRGKMTRVLNASSDKDQIARMKANIRDLEANLSLAGVAILEGKTSDLRATVERMAKIQAATQEVILANTEIITDRLSKTPAKPAKIPKSTPIWKSWHVERFDVVERVFEPLTADGGPPLVGLVGDSGSGKTTAASEIV---------------------------------------RSNEDRLPSLMLQLAHMVYEEI---GGRRPATS-----DDGTAYIKERMHRGHGGEGLKCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWEGEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFGGRLSTVRGRSDRTAWSKAASKVRTEMSKGECEGVRGTVVETRDAR-------RKAVVQAGFGDLAIGSDDERVQRLYLSLAVLPDGRRFTVKDAAVLIYDRMPSAEDEASAAGVVEILERWSALCSIR-GCYRMAWRGSHYVLHDAHSDFAREKLMDRGDVCRPALVRWTRNISSVDTLRAVRWHEVRDLWLGAEQVGGDGWKITRPYEAALAGLEDSDPHRPTLLDMPVTKVRPYSLSVIRSLHELGLGYKHAGCLEEAEEVLRGCLVIGGTL-LGFTHVTVAKTL-DLSGCVRAAGQFAQAXXXXXRCL 670          
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.130e-63
Identity = 177/533 (33.21%), Postives = 263/533 (49.34%), Query Frame = 1
Query:  235 ALSMDAPRPKDWHVVRHTVVDNVYDHLAAD-------EASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKIIEGSRRVRALFPDGVVWLRVGRDGADRLPALMQELAKRVYEFVLDSKGCGPGESP---IDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKTGMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPHAAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKAEDTVVSNRNQENDACADTRIAILRAGFECLEAENSQSRWLYLALAVMPDDHAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRMHNIRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIERIGGDGWRVSRPYNLAVSKLEISDSLFFPSVTVVANLY-AAEGYYQGNRTWFRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAESFSRRALMV 1800
            A+   APR  +WHV R   V    D L          E   +VG+ GPGGSGKST A+M++                      + VR  F  GV+WL VG      LP LM  LA+ VYE VL  K C P       +DP++ GA Y  E  +        R+LVVADD+R+ EV++ L+  G+ VL T+R   L+ GA   ++ ++ +TKEE   VL  AA + +DA LP AAH ++ RC +  + +    RW ++R + DE +W  A   I              + +   N      R A+LR G + LEA++  ++ LYL+LA++P   AF    AAVLL+G E +  +LE A +A+  LER +I+T    G YR+H + + F R   V       M + RWR + S L  + +     L+++W  I ++ G G  V+ PY+ A+ +++ S      ++   A  +   E   +     ++  L+ +E A  GP  L V  TL+ L  C  K GR EEAE   +RAL +
Sbjct:  123 AVPSGAPRIHEWHVERKEAVAEACDSLGIGSGKSEFFEMPRVVGMSGPGGSGKSTLASMVIAR--------------------QDVREYFYKGVLWLPVGEGAKHCLPELMLHLARMVYETVL-RKACRPPRLAGVGVDPED-GAGYIHEVVNE----SNHRFLVVADDIREPEVLEELKWAGVWVLYTSRRDDLLTGAP--LLRLDAVTKEEGGMVLRRAAGLGDDATLPPAAHELMQRCEYGAMQLAFAGRWGVVRGKSDEEAWRAALGHIAE------------AQKRGGNGRLLAWRDAMLRIGPDELEADSLHTKELYLSLAILPKGLAFRSKVAAVLLYGDECSADELEAAGKALETLERLSILTLEVSGKYRVHEVHADFVRECEVANNEEREMALARWRGYASDLRALSTYSSAWLVKIWDVIAQLEGTG-PVASPYDAALDRVDPSSPKLAKALKRAARFHWRREDRLEAYTKQYQLRLI-EETAAEGPSSLAVAKTLHILGMCVYKAGRKEEAEDNYQRALTI 613          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11899.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFN6_ECTSI1.890e-11338.50NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KRK8_9PHAE9.790e-9935.40NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KLK9_9PHAE1.390e-9635.89NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZW8_ECTSI3.470e-9635.87NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FZY7_ECTSI7.010e-8935.10NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JSI2_9PHAE3.100e-8636.84NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KYW3_9PHAE1.770e-8435.79NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KU40_9PHAE7.730e-7534.45NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KJ30_9PHAE2.110e-7031.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZP3_9PHAE1.130e-6333.21NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11899contigH-paniculata_contig11899:2453..5645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.7
Seed ortholog evalue2.5e-101
Seed eggNOG ortholog2880.D8LFN6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2259
Cds size2259
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11899.1211.1prot_H-paniculata_contig11899.1211.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11899 2453..5645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.8406017-CDS-H-paniculata_contig11899:2452..26381622928900.8406017-CDS-H-paniculata_contig11899:2452..2638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11899 2453..2638 +
1691480661.7561305-CDS-H-paniculata_contig11899:2452..26381691480661.7561305-CDS-H-paniculata_contig11899:2452..2638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11899 2453..2638 +
1622928900.8603182-CDS-H-paniculata_contig11899:3299..47591622928900.8603182-CDS-H-paniculata_contig11899:3299..4759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11899 3300..4759 +
1691480661.7676864-CDS-H-paniculata_contig11899:3299..47591691480661.7676864-CDS-H-paniculata_contig11899:3299..4759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11899 3300..4759 +
1622928900.8777478-CDS-H-paniculata_contig11899:5032..56451622928900.8777478-CDS-H-paniculata_contig11899:5032..5645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11899 5033..5645 +
1691480661.775088-CDS-H-paniculata_contig11899:5032..56451691480661.775088-CDS-H-paniculata_contig11899:5032..5645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11899 5033..5645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11899.1211.1

>prot_H-paniculata_contig11899.1211.1 ID=prot_H-paniculata_contig11899.1211.1|Name=mRNA_H-paniculata_contig11899.1211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=753bp
LEDCVQALRGLAARVSVRGTFAGVAKYRPDKTVIEGLRDRIEGLVPAMEL
TGVVRISEQLETIQALLARISLSPPKLTALSMDAPRPKDWHVVRHTVVDN
VYDHLAADEASWMVGLVGPGGSGKSTAAAMIVGNGLDVLRSHDGETHEKI
IEGSRRVRALFPDGVVWLRVGRDGADRLPALMQELAKRVYEFVLDSKGCG
PGESPIDPQNNGAAYTRETASGGMAGKGLRYLVVADDVRDKEVIKGLRKT
GMRVLLTTRDPTLVEGADGRVIPVNRLTKEEADAVLIGAAEVPEDARLPH
AAHFVVDRCGHVPIYVESVARWAMLRERGDETSWNRAANVIEHHFREIKA
EDTVVSNRNQENDACADTRIAILRAGFECLEAENSQSRWLYLALAVMPDD
HAFEVYEAAVLLFGHEHTDCDLEQAVQAVAVLERWAIVTEAGPGLYRMHN
IRSAFARRAIVGQRNVLAMTVQRWRDHLSTLEVVQSVDLYALLELWQGIE
RIGGDGWRVSRPYNLAVSKLEISDSLFFPSVTVVANLYAAEGYYQGNRTW
FRRSLVLQEEAGLGPEHLLVVSTLYGLIDCARKMGRLEEAESFSRRALMV
LEVSLGTKAALVAQTLYEVAMCLNGLDRAVEAEPFLRRALTIEEAKLGAE
DQEVAYTLHELAICVQRLGRTVEAEPLLRRALTIEEAKLGTEDQEVAYTL
HKLAICVQQLGRAVEAEPLLRRALIIEEAKLGAEDPRVAHTLHELALCVQ
ELG
back to top

mRNA from alignment at H-paniculata_contig11899:2453..5645+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11899.1211.1 ID=mRNA_H-paniculata_contig11899.1211.1|Name=mRNA_H-paniculata_contig11899.1211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3193bp|location=Sequence derived from alignment at H-paniculata_contig11899:2453..5645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAGGATTGTGTCCAGGCACTTAGAGGGCTTGCTGCACGCGTCAGCGT CCGAGGCACGTTTGCTGGGGTAGCGAAGTACCGCCCCGACAAGACCGTTA TCGAAGGATTGCGTGACCGGATCGAAGGGCTCGTGCCAGCCATGGAGCTG ACAGGAGTCGTCCGCATTTCTGAGCAGTTGGAGACCGTGCGGAGAGGTAT TGAGACAATATCTAATGCGCTGAAGGGAAACTCTGCGGAGAAGAAAACGC GCCTGGTGAGTACCTGGCGCTGGGTACTCGTGCGTGTGAAGGCACTATTG TATCGGCGACACATTGAAAACATTCGGGCAGCTTTGATACGTAAATAGTT GTTGGAGACTGATACTGTGACCAGTTACCTGGCTTTTGACACTTCCCATG GGGTCGCCATGTTTGGTGCAGTTGACGATTCAATAACTAGGGTGAAAACA CTGGATCCATAGCGTTCACATCATTGCTTTCAACGTTCTGCTGGCTATTG TTCTGTTGCCTCTACAGCAGCGAGTATTGCCGTAAAGTGACCAGCTCTTG GTTCTAGCTGGTGTAGTCTTCTCTTTTTTATCACCGTGTGCTACCTGAGC AAAGCTGCCAGCAGGCTTCGGTTCGATTGTAACCCTCTCGATTATGGTTG GTGTTATTCGGCGATTCTTTATGATGCATCATATTTTTGTTTTTGTATCA CAGGTTACCGTTGCTTCGGTCGACCTGACTCACTCCTCGCCGACACCGTA CTGTTGTGCTAACCAGAAGTGTGGAATCCAAGGCCAAAGCGATTTAATTC AGGGCCAAAGCAGCGTTGCGAGTGACAGCAAAGCAACCACAGAGGAGATA CAGGCGCTCCTCGCACGAATTTCTTTATCGCCACCCAAGCTGACCGCGTT GTCGATGGATGCCCCGCGACCTAAAGACTGGCATGTCGTCCGTCACACGG TGGTTGATAACGTGTACGATCACTTGGCCGCTGATGAGGCCTCGTGGATG GTGGGGCTGGTGGGACCTGGTGGGTCAGGCAAGAGCACAGCGGCGGCGAT GATCGTTGGAAATGGCTTGGATGTGCTCCGGTCTCACGATGGCGAGACAC ATGAAAAAATCATTGAGGGGTCACGTCGCGTTCGTGCACTTTTCCCGGAT GGTGTGGTGTGGCTCCGCGTGGGTAGAGATGGGGCGGACCGTCTCCCAGC TCTGATGCAGGAGCTGGCGAAGAGGGTGTACGAGTTCGTGTTGGATAGCA AGGGCTGTGGTCCCGGGGAATCGCCGATCGACCCACAGAACAATGGTGCT GCCTACACCCGGGAGACTGCCTCTGGGGGAATGGCGGGCAAAGGACTGCG CTACCTTGTTGTTGCAGATGATGTGCGGGACAAGGAGGTAATCAAGGGGC TGCGAAAGACCGGTATGCGTGTTCTGCTCACGACCCGAGATCCCACGCTA GTAGAGGGCGCTGATGGTCGGGTGATCCCTGTGAACCGATTGACGAAGGA GGAGGCGGACGCCGTGCTGATCGGTGCCGCGGAGGTCCCTGAAGACGCTC GTTTGCCGCACGCTGCGCACTTTGTAGTCGATAGGTGCGGCCACGTGCCC ATTTACGTTGAGTCCGTGGCGAGGTGGGCAATGTTGAGAGAAAGAGGCGA TGAAACCTCGTGGAATAGGGCCGCTAACGTTATCGAGCACCACTTCCGCG AGATTAAGGCAGAAGATACTGTCGTTAGTAATAGGAACCAGGAGAACGAT GCTTGTGCGGACACGCGCATTGCGATTCTTCGGGCCGGCTTCGAGTGCCT TGAGGCTGAAAACTCGCAGAGCCGGTGGCTGTACCTAGCGCTGGCGGTGA TGCCAGATGATCACGCATTCGAGGTGTACGAGGCGGCAGTGCTGTTATTC GGTCACGAGCACACGGACTGCGATCTGGAGCAGGCTGTGCAGGCAGTGGC GGTTTTAGAGAGATGGGCGATTGTCACGGAGGCGGGACCAGGTCTGTACC GTATGCACAACATCCGTTCGGCGTTCGCGAGAAGAGCTATTGTCGGGCAG AGAAATGTGCTTGCAATGACTGTACAGCGGTGGCGGGACCATCTGTCAAC GCTGGAGGTGGTCCAATCGGTGGATTTGTACGCCCTCTTAGAGTTGTGGC AGGGGATTGAGCGTATCGGAGGAGACGGATGGCGTGTGTCTCGCCCCTAC AATCTGGCCGTTTCTAAATTGGAAATCTCGGACTCGTTATTTTTTCCGTC TGTGACGGTGGTGGCAAATCTCTACGCAGCGGAAGGGTACTATCAGGGGA ATCGAACGTTCATGAAGAAGATATGGGAGCGTCTTGAGGGTAACCCGAAG GCTAACCCACTGGCTTCGTTGGCGGCGCTGACTTACTGTGTTGATGGAGC CGAAATGCAAGGGCTAGAAGATGAGGCACGAAGCATGCGACTTCGAATGG AGTCTCTGCTGAATGACTTCAAGAAGCAGTGGAAATCCGATCGCTCAGTT CATGCTGCTGAGGAAGGCTTGTTCCATTATTACACTGGATGGTATTGTAA ATGTCTAGAACAAGTGGAGGAAGCTGATAGGTGGTTCAGGCGGTCACTTG TGTTACAGGAGGAAGCCGGTCTGGGCCCTGAACACTTGCTGGTCGTGTCG ACGCTATATGGACTAATCGATTGCGCCAGGAAGATGGGACGATTGGAAGA AGCAGAATCATTTTCCCGTCGAGCGCTGATGGTTTTGGAGGTGAGCCTGG GAACGAAGGCGGCACTAGTCGCTCAGACCCTGTACGAGGTAGCGATGTGT TTGAATGGACTAGACCGTGCCGTGGAGGCAGAACCTTTTCTCCGTCGAGC GTTGACTATCGAGGAGGCGAAGTTGGGGGCGGAGGACCAGGAGGTGGCCT ATACACTCCACGAGCTTGCGATATGCGTGCAGCGGCTAGGCCGTACCGTG GAGGCAGAACCTTTGCTCCGTCGAGCGTTGACTATCGAGGAGGCGAAGTT AGGGACGGAGGACCAGGAGGTGGCCTATACACTCCACAAGCTTGCGATAT GCGTGCAGCAGCTAGGCCGTGCCGTGGAGGCAGAACCTTTGCTCCGTCGA GCGTTGATTATCGAGGAGGCCAAGTTAGGGGCGGAGGATCCGCGAGTGGC CCATACATTGCACGAGCTTGCGTTGTGCGTTCAGGAACTGGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11899:2453..5645+

>mRNA_H-paniculata_contig11899.1211.1 ID=mRNA_H-paniculata_contig11899.1211.1|Name=mRNA_H-paniculata_contig11899.1211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4518bp|location=Sequence derived from alignment at H-paniculata_contig11899:2453..5645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAGGATTGTGTCCAGGCACTTAGAGGGCTTGCTGCACGCGTCAGCGT
CCGAGGCACGTTTGCTGGGGTAGCGAAGTACCGCCCCGACAAGACCGTTA
TCGAAGGATTGCGTGACCGGATCGAAGGGCTCGTGCCAGCCATGGAGCTG
ACAGGAGTCGTCCGCATTTCTGAGCAGTTGGAGACCCTGGAGGATTGTGT
CCAGGCACTTAGAGGGCTTGCTGCACGCGTCAGCGTCCGAGGCACGTTTG
CTGGGGTAGCGAAGTACCGCCCCGACAAGACCGTTATCGAAGGATTGCGT
GACCGGATCGAAGGGCTCGTGCCAGCCATGGAGCTGACAGGAGTCGTCCG
CATTTCTGAGCAGTTGGAGACCATACAGGCGCTCCTCGCACGAATTTCTT
TATCGCCACCCAAGCTGACCGCGTTGTCGATGGATGCCCCGCGACCTAAA
GACTGGCATGTCGTCCGTCACACGGTGGTTGATAACGTGTACGATCACTT
GGCCGCTGATGAGGCCTCGTGGATGGTGGGGCTGGTGGGACCTGGTGGGT
CAGGCAAGAGCACAGCGGCGGCGATGATCGTTGGAAATGGCTTGGATGTG
CTCCGGTCTCACGATGGCGAGACACATGAAAAAATCATTGAGGGGTCACG
TCGCGTTCGTGCACTTTTCCCGGATGGTGTGGTGTGGCTCCGCGTGGGTA
GAGATGGGGCGGACCGTCTCCCAGCTCTGATGCAGGAGCTGGCGAAGAGG
GTGTACGAGTTCGTGTTGGATAGCAAGGGCTGTGGTCCCGGGGAATCGCC
GATCGACCCACAGAACAATGGTGCTGCCTACACCCGGGAGACTGCCTCTG
GGGGAATGGCGGGCAAAGGACTGCGCTACCTTGTTGTTGCAGATGATGTG
CGGGACAAGGAGGTAATCAAGGGGCTGCGAAAGACCGGTATGCGTGTTCT
GCTCACGACCCGAGATCCCACGCTAGTAGAGGGCGCTGATGGTCGGGTGA
TCCCTGTGAACCGATTGACGAAGGAGGAGGCGGACGCCGTGCTGATCGGT
GCCGCGGAGGTCCCTGAAGACGCTCGTTTGCCGCACGCTGCGCACTTTGT
AGTCGATAGGTGCGGCCACGTGCCCATTTACGTTGAGTCCGTGGCGAGGT
GGGCAATGTTGAGAGAAAGAGGCGATGAAACCTCGTGGAATAGGGCCGCT
AACGTTATCGAGCACCACTTCCGCGAGATTAAGGCAGAAGATACTGTCGT
TAGTAATAGGAACCAGGAGAACGATGCTTGTGCGGACACGCGCATTGCGA
TTCTTCGGGCCGGCTTCGAGTGCCTTGAGGCTGAAAACTCGCAGAGCCGG
TGGCTGTACCTAGCGCTGGCGGTGATGCCAGATGATCACGCATTCGAGGT
GTACGAGGCGGCAGTGCTGTTATTCGGTCACGAGCACACGGACTGCGATC
TGGAGCAGGCTGTGCAGGCAGTGGCGGTTTTAGAGAGATGGGCGATTGTC
ACGGAGGCGGGACCAGGTCTGTACCGTATGCACAACATCCGTTCGGCGTT
CGCGAGAAGAGCTATTGTCGGGCAGAGAAATGTGCTTGCAATGACTGTAC
AGCGGTGGCGGGACCATCTGTCAACGCTGGAGGTGGTCCAATCGGTGGAT
TTGTACGCCCTCTTAGAGTTGTGGCAGGGGATTGAGCGTATCGGAGGAGA
CGGATGGCGTGTGTCTCGCCCCTACAATCTGGCCGTTTCTAAATTGGAAA
TCTCGGACTCGTTATTTTTTCCGTCTGTGACGGTGGTGGCAAATCTCTAC
GCAGCGGAAGGGTACTATCAGGGGAATCGAACATACAGGCGCTCCTCGCA
CGAATTTCTTTATCGCCACCCAAGCTGACCGCGTTGTCGATGGATGCCCC
GCGACCTAAAGACTGGCATGTCGTCCGTCACACGGTGGTTGATAACGTGT
ACGATCACTTGGCCGCTGATGAGGCCTCGTGGATGGTGGGGCTGGTGGGA
CCTGGTGGGTCAGGCAAGAGCACAGCGGCGGCGATGATCGTTGGAAATGG
CTTGGATGTGCTCCGGTCTCACGATGGCGAGACACATGAAAAAATCATTG
AGGGGTCACGTCGCGTTCGTGCACTTTTCCCGGATGGTGTGGTGTGGCTC
CGCGTGGGTAGAGATGGGGCGGACCGTCTCCCAGCTCTGATGCAGGAGCT
GGCGAAGAGGGTGTACGAGTTCGTGTTGGATAGCAAGGGCTGTGGTCCCG
GGGAATCGCCGATCGACCCACAGAACAATGGTGCTGCCTACACCCGGGAG
ACTGCCTCTGGGGGAATGGCGGGCAAAGGACTGCGCTACCTTGTTGTTGC
AGATGATGTGCGGGACAAGGAGGTAATCAAGGGGCTGCGAAAGACCGGTA
TGCGTGTTCTGCTCACGACCCGAGATCCCACGCTAGTAGAGGGCGCTGAT
GGTCGGGTGATCCCTGTGAACCGATTGACGAAGGAGGAGGCGGACGCCGT
GCTGATCGGTGCCGCGGAGGTCCCTGAAGACGCTCGTTTGCCGCACGCTG
CGCACTTTGTAGTCGATAGGTGCGGCCACGTGCCCATTTACGTTGAGTCC
GTGGCGAGGTGGGCAATGTTGAGAGAAAGAGGCGATGAAACCTCGTGGAA
TAGGGCCGCTAACGTTATCGAGCACCACTTCCGCGAGATTAAGGCAGAAG
ATACTGTCGTTAGTAATAGGAACCAGGAGAACGATGCTTGTGCGGACACG
CGCATTGCGATTCTTCGGGCCGGCTTCGAGTGCCTTGAGGCTGAAAACTC
GCAGAGCCGGTGGCTGTACCTAGCGCTGGCGGTGATGCCAGATGATCACG
CATTCGAGGTGTACGAGGCGGCAGTGCTGTTATTCGGTCACGAGCACACG
GACTGCGATCTGGAGCAGGCTGTGCAGGCAGTGGCGGTTTTAGAGAGATG
GGCGATTGTCACGGAGGCGGGACCAGGTCTGTACCGTATGCACAACATCC
GTTCGGCGTTCGCGAGAAGAGCTATTGTCGGGCAGAGAAATGTGCTTGCA
ATGACTGTACAGCGGTGGCGGGACCATCTGTCAACGCTGGAGGTGGTCCA
ATCGGTGGATTTGTACGCCCTCTTAGAGTTGTGGCAGGGGATTGAGCGTA
TCGGAGGAGACGGATGGCGTGTGTCTCGCCCCTACAATCTGGCCGTTTCT
AAATTGGAAATCTCGGACTCGTTATTTTTTCCGTCTGTGACGGTGGTGGC
AAATCTCTACGCAGCGGAAGGGTACTATCAGGGGAATCGAACGTGGTTCA
GGCGGTCACTTGTGTTACAGGAGGAAGCCGGTCTGGGCCCTGAACACTTG
CTGGTCGTGTCGACGCTATATGGACTAATCGATTGCGCCAGGAAGATGGG
ACGATTGGAAGAAGCAGAATCATTTTCCCGTCGAGCGCTGATGGTTTTGG
AGGTGAGCCTGGGAACGAAGGCGGCACTAGTCGCTCAGACCCTGTACGAG
GTAGCGATGTGTTTGAATGGACTAGACCGTGCCGTGGAGGCAGAACCTTT
TCTCCGTCGAGCGTTGACTATCGAGGAGGCGAAGTTGGGGGCGGAGGACC
AGGAGGTGGCCTATACACTCCACGAGCTTGCGATATGCGTGCAGCGGCTA
GGCCGTACCGTGGAGGCAGAACCTTTGCTCCGTCGAGCGTTGACTATCGA
GGAGGCGAAGTTAGGGACGGAGGACCAGGAGGTGGCCTATACACTCCACA
AGCTTGCGATATGCGTGCAGCAGCTAGGCCGTGCCGTGGAGGCAGAACCT
TTGCTCCGTCGAGCGTTGATTATCGAGGAGGCCAAGTTAGGGGCGGAGGA
TCCGCGAGTGGCCCATACATTGCACGAGCTTGCGTTGTGCGTTCAGGAAC
TGGGCGTGGTTCAGGCGGTCACTTGTGTTACAGGAGGAAGCCGGTCTGGG
CCCTGAACACTTGCTGGTCGTGTCGACGCTATATGGACTAATCGATTGCG
CCAGGAAGATGGGACGATTGGAAGAAGCAGAATCATTTTCCCGTCGAGCG
CTGATGGTTTTGGAGGTGAGCCTGGGAACGAAGGCGGCACTAGTCGCTCA
GACCCTGTACGAGGTAGCGATGTGTTTGAATGGACTAGACCGTGCCGTGG
AGGCAGAACCTTTTCTCCGTCGAGCGTTGACTATCGAGGAGGCGAAGTTG
GGGGCGGAGGACCAGGAGGTGGCCTATACACTCCACGAGCTTGCGATATG
CGTGCAGCGGCTAGGCCGTACCGTGGAGGCAGAACCTTTGCTCCGTCGAG
CGTTGACTATCGAGGAGGCGAAGTTAGGGACGGAGGACCAGGAGGTGGCC
TATACACTCCACAAGCTTGCGATATGCGTGCAGCAGCTAGGCCGTGCCGT
GGAGGCAGAACCTTTGCTCCGTCGAGCGTTGATTATCGAGGAGGCCAAGT
TAGGGGCGGAGGATCCGCGAGTGGCCCATACATTGCACGAGCTTGCGTTG
TGCGTTCAGGAACTGGGC
back to top