mRNA_H-paniculata_contig11891.1209.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A6H5JU39_9PHAE (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU39_9PHAE) HSP 1 Score: 301 bits (770), Expect = 2.060e-87 Identity = 143/210 (68.10%), Postives = 173/210 (82.38%), Query Frame = 2 Query: 218 EDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 E E Y+A++Y+A HTM VL ELF EAR+ M+WL VA LVAKEGQP++W+TPLGLPV+QPYRR+ +QVQTLLQGV + E++++LPVA+ RQ +AFPPNFVHSLDSTHM++TA+EMDK VPFAAVHDSYWVHAGN+D MN KLRQ CFVDLYSGPILEDL +S+R+RYPTI+FPPIP+RGTL L++VKDSKYFFN Sbjct: 969 EVEETVYKASAYVAKHTMKVLEELFTEARNTMDWLKAVAQLVAKEGQPMSWITPLGLPVLQPYRRNDTYQVQTLLQGVHIREDSDNLPVAVKRQTTAFPPNFVHSLDSTHMMMTAIEMDKVGVPFAAVHDSYWVHAGNVDVMNDKLRQ-------------CFVDLYSGPILEDLQDSLRMRYPTIDFPPIPERGTLVLDSVKDSKYFFN 1165
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A7S3Y5S7_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5S7_HETAK) HSP 1 Score: 235 bits (600), Expect = 4.630e-69 Identity = 118/217 (54.38%), Postives = 153/217 (70.51%), Query Frame = 2 Query: 200 NQVMMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEG--QPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFF 844 +V+ E+E D RA+ +LA TM +GE+F EAR IM+WL + A LVA G PV WVTPLGLPV+QPYR++T + VQTL+Q +QL ++ LPVA RQ+SAFPPNFVHSLDSTHM++TAV+M +A + FAAVHDSYW HA ++D MN LR+ FV+LY P+LE L++S+R R+P + FPP+P RG LDL +V DS YFF Sbjct: 188 KKVLTAEEEQDITRASQFLATLTMECIGEVFKEARRIMDWLADCAALVAGTGCGAPVAWVTPLGLPVVQPYRKNTRYVVQTLVQYLQLARSDDALPVAAQRQRSAFPPNFVHSLDSTHMMMTAVKMHEAGLDFAAVHDSYWTHAADVDTMNRLLRE-------------SFVELYQQPVLERLYDSLRKRHPGLAFPPVPPRGALDLASVLDSPYFF 391
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A7S0GL68_9STRA (DNA-directed RNA polymerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GL68_9STRA) HSP 1 Score: 233 bits (595), Expect = 3.330e-67 Identity = 111/208 (53.37%), Postives = 142/208 (68.27%), Query Frame = 2 Query: 224 EADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 + + + A+ YLA TM V+GELF AR M WL A L++ EGQPV W+TP+G+PV+QPYR+ F V T+ Q ++L ++HLP+ RQ SAFPPN+VHSLDS HM+LTA+EM+K + F AVHDS+W HAGNID+MN LR FVDLY G +LEDL ES +LRYP IE P +P+RG LD++ VKDS YFF Sbjct: 296 DREIHLASGYLAKITMEVIGELFSGARQTMNWLTTCARLLSAEGQPVAWITPIGIPVVQPYRQKKAFSVVTMFQSIRLVTRSDHLPIHKGRQASAFPPNYVHSLDSAHMMLTALEMEKRNLDFTAVHDSFWTHAGNIDEMNEILRD-------------SFVDLYDGDVLEDLRESWKLRYPDIELPDLPERGDLDIKDVKDSTYFFQ 490
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A4D9D3J6_9STRA (DNA-directed RNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J6_9STRA) HSP 1 Score: 243 bits (620), Expect = 7.790e-67 Identity = 118/216 (54.63%), Postives = 151/216 (69.91%), Query Frame = 2 Query: 200 NQVMMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 +++ E+E + Y A+ Y+A T+ L ELF AR+IMEWL A LVA++GQP++WVTPLGLPV+QPYRR G V+TL+Q V L + N+ LPV+ +RQ+SAFPPNFVHSLDSTHML+TA + VPF AVHDSYW HA N++ MNA LR+ CF+ LY P+LE L +S+ R+P + FPPIPQRG L LE VKDS YFF+ Sbjct: 904 GRMLTKEEEQEVYEASRYVATVTLSKLAELFSAARNIMEWLSTCASLVARQGQPMSWVTPLGLPVIQPYRRDKGLLVKTLIQSVILVDCNDKLPVSSSRQRSAFPPNFVHSLDSTHMLMTANRLQGLGVPFTAVHDSYWCHASNVEVMNATLRE-------------CFITLYEQPVLEALRDSLVARFPDVAFPPIPQRGKLRLEEVKDSPYFFD 1106
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A836CEF2_9STRA (DNA-directed RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF2_9STRA) HSP 1 Score: 241 bits (616), Expect = 2.220e-66 Identity = 120/203 (59.11%), Postives = 147/203 (72.41%), Query Frame = 2 Query: 245 ASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEH--LPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 A+YLA+ TMG L LF EAR+IM+WL +A +VA++GQP+ WVTPLGLPV+QPYRR F ++TLLQ V L+ + LPV ARQ+SAFPPNFVHSLDSTHML+TA MD +PFAAVHDSYW HAG++D MNA LR FV+LYS PILEDLH S+ R+P ++FP +P RG LD+ AV+DS YFFN Sbjct: 882 ANYLASLTMGALSGLFSEARAIMDWLATLARIVAQQGQPMAWVTPLGLPVVQPYRRGGDFTIKTLLQSVTLSGAGDDAALPVEAARQRSAFPPNFVHSLDSTHMLMTAAAMDARGIPFAAVHDSYWCHAGHVDVMNAALRDT-------------FVELYSRPILEDLHASLTARFPDVKFPRVPPRGALDVGAVRDSAYFFN 1071
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A7S2EID2_9STRA (DNA-directed RNA polymerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EID2_9STRA) HSP 1 Score: 224 bits (570), Expect = 7.090e-65 Identity = 108/212 (50.94%), Postives = 145/212 (68.40%), Query Frame = 2 Query: 212 MDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 +DE E + A YLA TM V+G LF AR M+WL A L++++GQPV W++P+G+P +QPYR++ + + TL+Q V LT +E+LP+ +RQ SAFPPN+VHSLDS+HMLLTA+EMD+ + F+AVHDS+W HA +ID+MN LR CFVDLY P+LE+L + LRYPT+ FP IP+RG LDL VK + YFF Sbjct: 174 VDEIEPEINAACGYLATMTMDVMGTLFTGARQTMDWLATCARLISQQGQPVAWLSPIGVPAVQPYRQNKPYTIYTLVQKVVLTNSSENLPIHKSRQVSAFPPNYVHSLDSSHMLLTALEMDRRGLTFSAVHDSFWTHACDIDEMNGVLRD-------------CFVDLYDQPLLEELKRTWELRYPTLNFPDIPERGDLDLNEVKKAPYFFQ 372
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A7S2NXW4_9STRA (DNA-directed RNA polymerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXW4_9STRA) HSP 1 Score: 223 bits (567), Expect = 1.640e-63 Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 2 Query: 212 MDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 +DE E + Y A+SYLA+ TM V+G+LF AR WL + A L++ G PV W+TPLG+P +QPYR V+T+LQ V L ++ LP+ +RQ SAFPPN+VHSLD+THML+T +EMD+ + F AVHDS+W HA +ID+MN+ LR CFVDLYS P+LE+L ++ LRYP +EFPP+P++G +DL +V +S YFF Sbjct: 254 VDEMEEEIYSASSYLASVTMEVMGDLFTGARQTQNWLTDCARLISSRGHPVAWLTPLGVPAVQPYRHKKLHTVRTILQRVSLALSDDDLPLHKSRQVSAFPPNYVHSLDATHMLMTGMEMDRRGLTFTAVHDSFWTHAADIDEMNSVLRS-------------CFVDLYSQPLLEELKKTWELRYPDLEFPPVPKKGEMDLRSVLNSSYFFQ 452
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: F0XZ85_AURAN (DNA-directed RNA polymerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ85_AURAN) HSP 1 Score: 231 bits (590), Expect = 2.160e-63 Identity = 115/211 (54.50%), Postives = 143/211 (67.77%), Query Frame = 2 Query: 215 DEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVEMDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 D DEA+ Y A Y+A T+ VL ELF AR IM WL + A LV+ GQPV+W+TPLGLPV+QPYRR V+TL Q V L + ++ LPV++ RQKSAFPPNFVHSLDS+HML+TAVEMD + F AVHDSYW HA ++ MN+ LR CF++LY P+LE L ES LRYP +FPP+P RG LD+ V D+ YFF+ Sbjct: 705 DVDEAELYLCACYVARLTLEVLEELFTSARHIMGWLAQCARLVSLHGQPVSWITPLGLPVVQPYRRDGQHAVKTLAQTVLLVDNSDKLPVSVTRQKSAFPPNFVHSLDSSHMLMTAVEMDHRGLAFTAVHDSYWTHAADVATMNSTLRH-------------CFLELYEAPLLEKLLESFELRYPDTDFPPLPPRGDLDIAKVLDADYFFS 902
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: A0A2P4Y1A0_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y1A0_9STRA) HSP 1 Score: 217 bits (553), Expect = 2.770e-63 Identity = 113/224 (50.45%), Postives = 149/224 (66.52%), Query Frame = 2 Query: 179 HACGIAVNQVMMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVE-MDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 H + +M ++ E + YRA+ Y A TMG +G+LF AR IM WL + A V + GQP++W+TPLGLPV+QPYR+ QV+T +Q V L ENE V+I RQKSAFPPNFVHSLDSTHM+LTA +++ + FAAVHDSYW HA ++D MN +LR+ FV+LY P+LEDL + +RLR+P ++F +PQ G LDL +V DS YFFN Sbjct: 90 HETFLTKGHIMDEKLEDEIYRASCYCAEITMGSMGDLFNSARGIMGWLAKCAAKVGESGQPMSWITPLGLPVVQPYRKKGTKQVRTKVQHV-LMVENEGRDVSIGRQKSAFPPNFVHSLDSTHMMLTARRCLEEDNIAFAAVHDSYWTHACSVDIMNRRLREE-------------FVNLYEQPLLEDLLDELRLRFPDMKFDDVPQLGDLDLRSVLDSPYFFN 299
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Match: M4BTL4_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTL4_HYAAE) HSP 1 Score: 213 bits (541), Expect = 7.490e-63 Identity = 113/214 (52.80%), Postives = 141/214 (65.89%), Query Frame = 2 Query: 209 MMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQPVTWVTPLGLPVMQPYRRSTGFQVQTLLQGVQLTEENEHLPVAIARQKSAFPPNFVHSLDSTHMLLTAVE-MDKARVPFAAVHDSYWVHAGNIDDMNAKLRQLIFGYFRRIPYTQCFVDLYSGPILEDLHESIRLRYPTIEFPPIPQRGTLDLEAVKDSKYFFN 847 M D+ E D Y AA Y A TMG +G+LF AR IM WL + A + GQP++W+TPLGLPV+QPYR + QV+T +Q V L ENE V+I RQKSAFPPNFVHSLDSTHM+LTA ++ + FAAVHDSYW HA ++D MN +LR+ FV+LY P+LEDL +RLR+P + F +P+ GTLDL V DS YFFN Sbjct: 1 MDDQLEDDIYHAACYCAELTMGSMGDLFTSARGIMGWLAKCAAQAGESGQPMSWITPLGLPVVQPYRSKSTKQVRTKVQHV-LMVENEGRQVSIGRQKSAFPPNFVHSLDSTHMMLTARRCLEDDEISFAAVHDSYWTHACSVDTMNRRLREE-------------FVNLYEQPLLEDLLTELRLRFPDMTFDDVPRLGTLDLRNVLDSPYFFN 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11891.1209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11891.1209.1 >prot_H-paniculata_contig11891.1209.1 ID=prot_H-paniculata_contig11891.1209.1|Name=mRNA_H-paniculata_contig11891.1209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp MMDEDEADAYRAASYLAAHTMGVLGELFGEARSIMEWLMEVAVLVAKEGQback to top mRNA from alignment at H-paniculata_contig11891:5020..7652- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11891.1209.1 ID=mRNA_H-paniculata_contig11891.1209.1|Name=mRNA_H-paniculata_contig11891.1209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2633bp|location=Sequence derived from alignment at H-paniculata_contig11891:5020..7652- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11891:5020..7652- >mRNA_H-paniculata_contig11891.1209.1 ID=mRNA_H-paniculata_contig11891.1209.1|Name=mRNA_H-paniculata_contig11891.1209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig11891:5020..7652- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |