mRNA_H-paniculata_contig11887.1206.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11887.1206.1
Unique NamemRNA_H-paniculata_contig11887.1206.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11887.1206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11887contigH-paniculata_contig11887:2668..3261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size594
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11887.1206.1prot_H-paniculata_contig11887.1206.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11887 2683..2985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.1759388-UTR-H-paniculata_contig11887:2667..26821622928900.1759388-UTR-H-paniculata_contig11887:2667..2682Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11887 2668..2682 +
1691480661.5149927-UTR-H-paniculata_contig11887:2667..26821691480661.5149927-UTR-H-paniculata_contig11887:2667..2682Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11887 2668..2682 +
1622928900.2145581-UTR-H-paniculata_contig11887:2985..32611622928900.2145581-UTR-H-paniculata_contig11887:2985..3261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11887 2986..3261 +
1691480661.5350213-UTR-H-paniculata_contig11887:2985..32611691480661.5350213-UTR-H-paniculata_contig11887:2985..3261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11887 2986..3261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.1967397-CDS-H-paniculata_contig11887:2682..29851622928900.1967397-CDS-H-paniculata_contig11887:2682..2985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11887 2683..2985 +
1691480661.525384-CDS-H-paniculata_contig11887:2682..29851691480661.525384-CDS-H-paniculata_contig11887:2682..2985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11887 2683..2985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11887.1206.1

>prot_H-paniculata_contig11887.1206.1 ID=prot_H-paniculata_contig11887.1206.1|Name=mRNA_H-paniculata_contig11887.1206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MKRPMKKRGKRSLNRLQYFKCTIDIDRSYPYNRLRMSGINRIMCLDRIFG
SNISDSVYGPGFTGPRRQDPNIRWRYMALPDARHAEALVRTTAANVLCHH
*
back to top

mRNA from alignment at H-paniculata_contig11887:2668..3261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11887.1206.1 ID=mRNA_H-paniculata_contig11887.1206.1|Name=mRNA_H-paniculata_contig11887.1206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig11887:2668..3261+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTGCATCACCAAGATGAAAAGACCGATGAAGAAACGAGGGAAGCGAAG
CTTGAATCGTCTGCAGTACTTCAAATGCACGATTGACATAGACCGTAGTT
ACCCATACAACCGCTTGCGGATGTCGGGTATAAACAGGATCATGTGCCTC
GACCGAATATTCGGGTCTAACATTTCCGACTCAGTTTATGGTCCCGGTTT
TACCGGACCGAGAAGGCAAGACCCAAATATCCGGTGGAGGTACATGGCGC
TTCCTGACGCCCGACATGCAGAAGCATTAGTACGAACAACTGCTGCCAAC
GTACTCTGCCACCATTAGAGCACTTCAGGGGATGCAAGACTTTGCTGATA
TTGCTTCTTCGAGAACTTGTTCTTTGATCACGGCCGAGCCAACAGATTGT
CGCAGCTGGGTTATGACGTCGATTGGAAGGGAAGTGAGCGCACCAATGCT
TACCACCGTCTGTCGATAAAGTACATGGTTTACTGCCGTATACTGCCCGA
CGGCCCCTTCACGAACCGGGTTCAGGGCCCTTGACACGCCACGGAGCGGG
TTAGAGTGTGAGCCATTGTAGAGGCTACCAGAGCACGATTAGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11887:2668..3261+

>mRNA_H-paniculata_contig11887.1206.1 ID=mRNA_H-paniculata_contig11887.1206.1|Name=mRNA_H-paniculata_contig11887.1206.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig11887:2668..3261+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGACCGATGAAGAAACGAGGGAAGCGAAGCTTGAATCGTCTGCA
GTACTTCAAATGCACGATTGACATAGACCGTAGTTACCCATACAACCGCT
TGCGGATGTCGGGTATAAACAGGATCATGTGCCTCGACCGAATATTCGGG
TCTAACATTTCCGACTCAGTTTATGGTCCCGGTTTTACCGGACCGAGAAG
GCAAGACCCAAATATCCGGTGGAGGTACATGGCGCTTCCTGACGCCCGAC
ATGCAGAAGCATTAGTACGAACAACTGCTGCCAACGTACTCTGCCACCAT
TAGATGAAAAGACCGATGAAGAAACGAGGGAAGCGAAGCTTGAATCGTCT
GCAGTACTTCAAATGCACGATTGACATAGACCGTAGTTACCCATACAACC
GCTTGCGGATGTCGGGTATAAACAGGATCATGTGCCTCGACCGAATATTC
GGGTCTAACATTTCCGACTCAGTTTATGGTCCCGGTTTTACCGGACCGAG
AAGGCAAGACCCAAATATCCGGTGGAGGTACATGGCGCTTCCTGACGCCC
GACATGCAGAAGCATTAGTACGAACAACTGCTGCCAACGTACTCTGCCAC
CATTAG
back to top