mRNA_H-paniculata_contig11877.1202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 276 bits (706), Expect = 3.050e-79 Identity = 201/664 (30.27%), Postives = 318/664 (47.89%), Query Frame = 1 Query: 1 SPYEKWHGTAPKLGHLHVFRCTAYVMFQSQQRSKLDDRAWAGMFLGYDEDSPSYRIYHIQPGKQERPVEQEREI*RRGLRNRSSRTAGARRDAQHGRRIFNSASHASGYSMPRPRRARKRN*HRRPDVGVANAAHIVNTFAASHQRKPVHGRHW*PHRDGI*GGAEIRGRSIKGPRGGKMARGNEGRVGGVGEKWNMGKRGPGEVTGRAEGDSYEMDLQAQAEGGRQR-GTLQSATGGS-------RVFTGGG*RF---L*K*CVDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVG-RRKKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNV 1956 +P+E W G PK+ HL +F CT Y +R KLD +A + LGY ++ YR+Y + K V R++ + + A D R + P + R + PD N K V P + E S+ + +GR VG KW +V A+G + A+G Q+ G+ T R ++ L + V A+LN ++EE++++ P F ++ V +L +S+Y LKQ WN +LD L ++G ++T DPC+Y + GE I+AVY DD+++ G K++ E K +++HF +KD+G L+ LG++ I + +Y VLK++G + + V TP + K++ + + +++ V SL+Y ST TRPD AYAV+ AR P +++++ KRI RYL + G+ + K GF D DWA D DRKS +GY+F++S A+ W S+KQ V S+ EA+Y+A +E V++R L+ + G T +FED +SAI ++K S H R KHI +++H IRE GGV+ L+Y T D +AD+ TK LS+ +F +LR + Sbjct: 99 TPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAK----VFFSRDVIFNESNHAFEKEPVANEDGAVNRYVEFDCQEPDNEESPEQKVQRSERLRKPPDYYGEWVTVASNPTTEPKTVKDVLSS---PDKAKWKEAMEKEMESLYANNVWNLVELPKGRKA-VGSKWVF------KVKVDADGTFERHKARLVAQGFSQKFGSDYDETFSPVVRFESVRTIIAQAVQYGLKLHQMDVKTAFLNGELKEEVYMQQPEGFVVKGKE-HLVCKLNRSIYGLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAAT--GEM-FIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDPKQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYN-KDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCVALSTAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTKGLSQEKFVKLREM 743
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 274 bits (701), Expect = 5.440e-79 Identity = 150/401 (37.41%), Postives = 233/401 (58.10%), Query Frame = 1 Query: 760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959 V A+LN ++EE+++K F ++ V RLR+S+Y LKQ WNS+LD L +G ++T DPC+Y +++GGE I+AVY DD+++ G+ +K++E K +++ F+MKD+G L LG++ + I I +Y + VL+R+G + + TP K+ + + Y+ V L+Y ST+TRPD AYAV AR DP E++ KRI RYL+ G+ + G S G+ D DWA D++DRKST+GYVF++S+ AI W S+KQ V S+ EA+Y+A +E V+L+ LL + G + ED ++AI ++K + H R KHI +++H IRE + L+Y T + +ADI TK LS ++F +LR +L Sbjct: 94 VTTAFLNGDLKEEVYMKQTEGFIEKGKE-HLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 491
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 270 bits (690), Expect = 9.330e-78 Identity = 139/400 (34.75%), Postives = 238/400 (59.50%), Query Frame = 1 Query: 760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNV 1956 V AA+LN +E+E+++K P F ++ +L KSLY LKQ WNS+LD L IG ++ +DPC+Y +DG +VA++ DD+++ G+ +K+ + K I++ F++KD+G L +LG++ + ++ + I +Y ++K+YG + C+ V TP + +K+++ + N E++ V SL+Y S+ TRPD +AV+ A+ +P E+++ KRIFRYL + G+ + +N + GF D DWA D+ DRKST+GY F+++ A+ W S+KQ V S+ A+YVA +E +++R LL + T++ED +SAI++SK H R+KHI ++++ +R+ LT+ Y TG LAD+ TK + + +F++LR + Sbjct: 258 VTAAFLNGELEDEVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 651
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT) HSP 1 Score: 277 bits (709), Expect = 6.590e-77 Identity = 145/401 (36.16%), Postives = 242/401 (60.35%), Query Frame = 1 Query: 760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDI-IVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNV 1956 V AA+LN +E+E+++K P F ++ V +L KSLY LKQ WNS+LD L IG ++ +DPC+Y +DG DI +VA++ DD+++ G+ +K+ + K I++ F++KD+G L +LG++ + ++ + I +Y ++K+YG + C+ V TP + +K+++ + N EY+ V SL+Y S+ TRPD +AV+ A+ +P E+++ KRIFRYL + G+ + +N + GF D DWA D+ DRKST+GY F+++ A+ W S+KQ V S+ EA+YVA +E +++R LL + T++ED +SAI++SK H R+KHI +++H +R+ LT+ Y TG LAD+ TK + + +F++LR + Sbjct: 872 VTAAFLNGELEDEVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 1265
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT) HSP 1 Score: 267 bits (683), Expect = 6.890e-77 Identity = 147/401 (36.66%), Postives = 230/401 (57.36%), Query Frame = 1 Query: 760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959 V A+LN ++EE+++K P F ++ V RLR+S+ LKQ WNS+LD L +G ++T DPC+Y +++GGE I+AVY DD+++ G+ +K++E K +++ F+MKD+G LG++ + I I +Y + VL+R+G + + TP K+ + + Y+ V L+Y ST+TRPD AYAV AR P E++ KRI RYL+ G+ + G S G+ D DWA D++DRKST+GYVF++S+ AI W S+KQ V S+ EA+Y+ +E V+L+ LL + G + ED ++AI ++K + H R KHI +++H IRE + L+Y T + +ADI TK LS ++F +LR +L Sbjct: 242 VTTAFLNGDLKEEVYMKQPEGFIDKGKE-HLVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 639
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT) HSP 1 Score: 255 bits (651), Expect = 3.890e-75 Identity = 135/382 (35.34%), Postives = 223/382 (58.38%), Query Frame = 1 Query: 817 PEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDI-IVAVYDDDLVIVGRR-KKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNV 1956 PE V +L KS Y LKQ WNS+LD L IG ++ +DPC+Y +DG DI +VA++ DD+++ G+ +K+ + K I++ F++KD+G L +LG++ + + + I +Y ++K+YG + C+ V TP + +K+++ + N EY+ V SL+Y S+ TRPD +AV+ A+ + E+++ KRIFRYL + G+ + +N + GF D DWA D+ DRKST+GY F+++ A+ W S+KQ V S+ EA+YVA +E +++R LL + T++ED +SAI++SK H R+KHI +++H +R+ LT+ Y TG LAD+ TK + + +F++LR + Sbjct: 1 PEGFEVKGKEHLVCKLNKSRYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 272 bits (695), Expect = 6.620e-75 Identity = 148/404 (36.63%), Postives = 230/404 (56.93%), Query Frame = 1 Query: 760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFS---RDDGGETDIIVAVYDDDLV-IVGRRKKVDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959 V A+L ++E +F+K P + R V +L +S+Y LKQ WNS +D FL+ G +S DPC+Y R +G +I+A+Y DD++ + + + K +++ F+++D+G +S +LG+ + + T+TI Y VLKR+G EC+ V TP E K + D + EY+ + L YA+ TRPD A AV ++ M P ++++ KR+ RY+ H G+TF N L G+ D DW DVE R+ST+GYVF++ + I WCS++Q V+ S+TEA+Y+A +E V+LR LL IG +T+FED + AI LSK H RTKHI V +H IRE ++ +KY +T + LAD++TK L ++ F+R R+++ Sbjct: 926 VKTAFLQGELDEVIFMKQPEGYVDQERPDH-VCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPGRKFESLSENDTPIDVREYQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR) HSP 1 Score: 257 bits (657), Expect = 9.360e-75 Identity = 144/395 (36.46%), Postives = 224/395 (56.71%), Query Frame = 1 Query: 760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRRKKVD-EFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGH-SLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEF 1938 V AYLN ++EELF++ PP FS + + V RLR+SLY LKQ WN + L ++G + DPCL FSR + T V +Y DDL+I G ++ + ++ +F +KDLG + + LG++ + S + + + R +LK +G + + V TP E E + K ++ EYR + SL+Y +T TRPD ++AV Q R ME P + ++ KR+ RYL+ + + + F +NG L GF+D DWA D DRKST+GY FK+ + W SRKQ V SSTEA+Y+A E ++ +++R +L IG T ++ED + I +++ RTKHI +R+H++RE G++ L Y + + AD+LTK L++ +F Sbjct: 89 VKTAYLNGKLDEELFLEPPPGFSQPTTGGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRSEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREEDGSFL-LYQAAKVRHLLKEHGLLDAKPVATPMEANFLSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFS--ANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRELQESGIIALTYCPSNEMPADMLTKPLTKDKF 478
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT) HSP 1 Score: 257 bits (657), Expect = 3.120e-74 Identity = 147/408 (36.03%), Postives = 225/408 (55.15%), Query Frame = 1 Query: 760 VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLY---FSRDDGGETDIIVAVYDDDLVIVGRRKKVDEFKHDI-SQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITF----GGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959 V A+LN +E ++++ P F +V +L+KSLY LKQ WN LD FL + G +S D C+Y D+G + +I+AVY DD++ + + + D+ +HF M D G + +LG+ + D T+ I Y VL R+G C+ + TP E E ++ + Y+ + L Y ST TRPD + AV + M +P +E+++ KR+ RY+ + G+ F NG L G+ D +WA DV+ R+ST+GYVFK+++ + WCS+KQ VT S+TEA+YVA + +E +++R LL IG TT++ED + AI +SK + H RTKHI VR+H +RE + + Y T LADI+TK L++ FQRLR++L Sbjct: 126 VKTAFLNGYIEHDIYMSQPDGFVD-QEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPISTPLETTYHKRTEE--EEGFDKNLYQQAIGRLTYISTATRPDISAAVSILSSYMSNPSKEHWNGVKRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 530
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 264 bits (675), Expect = 3.190e-73 Identity = 216/697 (30.99%), Postives = 333/697 (47.78%), Query Frame = 1 Query: 1 SPYEKWHGTAPKLGHLHVFRCTAYVMFQSQQRSKLDDRAWAGMFLGYDEDSPSYRIYHIQPGKQERPVEQEREI*RRGLRNRSSRT-------------AGARRDAQH-------GRRIFNSASHASGYSMPRPRRARKRN*HRRPDVGVANAAHIVNTFAASHQ---RKPVHGRHW*PHRDGI*GGAEIRGRSIKG-------PRGGKMARGNEGRVGGVGEKW--NMGKRGPGEVTGRAEGDSYEMDLQAQAEGGRQRGTLQSATGGSRVFTGGG*RFL*K*C-----------VDAAYLNVPVEEELFVKLPPEFSPFSRDVRFVRRLRKSLYSLKQGGPNWNSILDHFLVEIGLNRSTTDPCLYFSRDDGGETDIIVAVYDDDLVIVGRRKK-VDEFKHDISQHFRMKDLGSLSRMLGIEGRGDHPNSTITIL*GSYFREVLKRYGFDECRGVPTPAEGKAKILAPESADKADNSTEYRGMVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHPGITFGGKSNGHSLEGFLDTDWAEDVEDRKSTTGYVFKLSDGAIGWCSRKQQLVTWSSTEAKYVATGEVKKETVYLRGLL*SIGFGHRGSTTLFEDYKSAISLSKGSGAHCRTKHIGVRWHKIREWTRGGVLTLKYVQTGDQLADILTKELSRLEFQRLRNVL 1959 +P E W G P + HL VF AY + RSKLDD++ A +F+GYD +S Y++Y+ P + ++ E G + SS A +D Q + AS S + RAR + N ++ FA + V + W RD + EI+ P+G K +G KW K GE+ + Y+ L A+G QR + + V R + V +A+LN ++EE++++ P + ++ + V RL+K+LY LKQ WNS +D +L E G + + LY DG +IV +Y DDL+ G ++ +DEFK +++ F M D+G ++ LGIE + I I Y +E++K++ D+C V TP E K+ + +K D T ++ +V SL Y + TRPD YA +R ME+P + T +RI RYL + G+ F SN + L G+ D+DWA D++DRKSTTG+VF + D A W S+KQ +VT S+ EA+YVA +++R LL +G+ TT+ D KSA++L+K H R+KHI R+H IRE + ++YV++ DQ+ADI TK L + +F +LR++L Sbjct: 327 TPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYN--PDTNNLVISRDVEFDEEGEWDFSSHEDFNSIMPTEEEEQPTAEQDVQQEPTTPLTSPTVVQDASPPSFLNERSVERARSLGDIYEDTERLENLT-LLCLFADCEPVTFEEAVQSKKW---RDAM--DEEIKSIEKNDTWELTSLPKGHKA----------IGVKWVYKAKKNSKGEI------ERYKARL--VAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGVLDEEVYIQQPMGYKVKMQEDK-VLRLKKALYGLKQAPRAWNSRIDKYLQENGFAKCPHEHALYTKMKDGDI--LIVCLYVDDLIFAGNNQRMIDEFKQSMAKVFEMTDIGLMAYYLGIEVK--QLEDGIFISQEGYAKEIIKKFKMDDCNPVNTPVECGIKLSKHDEDEKVDT-TMFKSLVGSLRYLTC-TRPDILYATGLISRYMENPTTTHLKTARRILRYLKGTINFGL-FYSTSNDYKLVGYSDSDWAGDIDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWMRSLLKELGWPQEDPTTICVDNKSALALAKNPVFHDRSKHIDTRYHYIRECITRKDVQVEYVKSKDQVADIFTKPLKQEDFIKLRSLL 989 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11877.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11877.1202.1 >prot_H-paniculata_contig11877.1202.1 ID=prot_H-paniculata_contig11877.1202.1|Name=mRNA_H-paniculata_contig11877.1202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp MVESLMYASTETRPDTAYAVHQAARRMEDPCRENFSTCKRIFRYLSAASHback to top mRNA from alignment at H-paniculata_contig11877:1571..3844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11877.1202.1 ID=mRNA_H-paniculata_contig11877.1202.1|Name=mRNA_H-paniculata_contig11877.1202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2274bp|location=Sequence derived from alignment at H-paniculata_contig11877:1571..3844- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11877:1571..3844- >mRNA_H-paniculata_contig11877.1202.1 ID=mRNA_H-paniculata_contig11877.1202.1|Name=mRNA_H-paniculata_contig11877.1202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig11877:1571..3844- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |