mRNA_H-paniculata_contig11875.1201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11875.1201.1
Unique NamemRNA_H-paniculata_contig11875.1201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: A0A7S3HG28_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG28_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.470e-23
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            GLFLTP+LAGLPE+V+T+L STVP P RLGRP+EYAQ+V+SII+NNMLNGE+IR+DGALRM P
Sbjct:  198 GLFLTPMLAGLPEQVQTELASTVPFPKRLGRPDEYAQLVQSIIENNMLNGEIIRIDGALRMSP 260
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: A0A662WK70_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WK70_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.660e-23
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            GLF+TPLLAGLPE+++ QLG +VP P RLG PEEYAQ+V++IIDN MLNGE IRLDGALRMPP
Sbjct:   74 GLFMTPLLAGLPEKMQQQLGESVPFPSRLGNPEEYAQLVQAIIDNKMLNGETIRLDGALRMPP 136
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: A0A485LK12_9STRA (Aste57867_21602 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485LK12_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.220e-22
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            GLF TPLLAGLPE+V+ +LG TVP P RLG+PEEYAQ+V+SII+N MLNGEVIRLDGALRMPP
Sbjct:  193 GLFRTPLLAGLPEQVQNELGLTVPFPSRLGKPEEYAQLVQSIIENRMLNGEVIRLDGALRMPP 255
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: D8LPQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPQ4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.940e-22
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            GLF+TPLL GLP+ VRTQL STVPNPPRLGR EE+A +V SIIDN MLNGEVIRLDGALRM P
Sbjct:  188 GLFMTPLLEGLPDLVRTQLASTVPNPPRLGRAEEFAHLVGSIIDNKMLNGEVIRLDGALRMGP 250
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: UPI0003FCDAB2 (SDR family oxidoreductase n=1 Tax=Solirubrobacter soli TaxID=363832 RepID=UPI0003FCDAB2)

HSP 1 Score: 101 bits (252), Expect = 3.060e-22
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            GLF TPLLAGLPEEVRT LG+TVPNPPRLGRP+EYA +   I+ N MLNGEVIRLDGALRM P
Sbjct:  189 GLFDTPLLAGLPEEVRTSLGATVPNPPRLGRPDEYAALALHIVSNTMLNGEVIRLDGALRMAP 251
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: H3G889_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3G889_PHYRM)

HSP 1 Score: 101 bits (251), Expect = 4.630e-22
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            GLF+TPLLAGLPE+++ QLG +VP P RLG PEEYAQ+V SIIDN MLNGE IRLDGALRMPP
Sbjct:  193 GLFMTPLLAGLPEKMQQQLGESVPFPSRLGNPEEYAQLVHSIIDNKMLNGETIRLDGALRMPP 255
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: A0A8K1CGL6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGL6_PYTOL)

HSP 1 Score: 101 bits (251), Expect = 4.630e-22
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:  484 TERKGLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            T   GLF TPLLAGLPE+V+ +LG+TVP P RLG PEEYAQ+V+SII+N MLNGE IRLDGALRMPP
Sbjct:  189 TVAPGLFKTPLLAGLPEKVQQELGATVPFPSRLGNPEEYAQLVQSIIENKMLNGETIRLDGALRMPP 255
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: A0A0D6B9W1_RHOSU (3-hydroxyacyl-CoA dehydrogenase n=11 Tax=Rhodovulum TaxID=34008 RepID=A0A0D6B9W1_RHOSU)

HSP 1 Score: 99.8 bits (247), Expect = 1.620e-21
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            G+F TP++AGLP+EV+  LG+TVP PPRLGRPEEYA++V SI++N MLNGEVIRLDGALRM P
Sbjct:  189 GIFATPMMAGLPQEVQDSLGATVPYPPRLGRPEEYARMVRSIVENQMLNGEVIRLDGALRMAP 251
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BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: A0A482SBJ5_9ARCH (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBJ5_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 2.810e-21
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            GLFLTPLL GLPE VRT+L STVP P RLG PEEYAQ+V+SII+N MLNGE IRLDGALRM P
Sbjct:  201 GLFLTPLLEGLPEAVRTELASTVPFPKRLGNPEEYAQLVQSIIENPMLNGETIRLDGALRMQP 263
[Close]
BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Match: A0A547Q9G3_9RHOB (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Paenimaribius caenipelagi TaxID=2489174 RepID=A0A547Q9G3_9RHOB)

HSP 1 Score: 98.6 bits (244), Expect = 4.500e-21
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:  496 GLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVVESIIDNNMLNGEVIRLDGALRMPP 684
            GLFLTP+L GLP+EV+  LG+ VP PPRLGRPEEYAQ+VESI+ N MLNGEVIRLDGA+RM P
Sbjct:  190 GLFLTPMLKGLPQEVQDSLGAQVPFPPRLGRPEEYAQLVESILRNPMLNGEVIRLDGAIRMAP 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11875.1201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3HG28_9STRA3.470e-2377.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A662WK70_9STRA3.660e-2376.19Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A485LK12_9STRA1.220e-2279.37Aste57867_21602 protein n=4 Tax=Aphanomyces TaxID=... [more]
D8LPQ4_ECTSI2.940e-2280.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0003FCDAB23.060e-2279.37SDR family oxidoreductase n=1 Tax=Solirubrobacter ... [more]
H3G889_PHYRM4.630e-2277.78Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
A0A8K1CGL6_PYTOL4.630e-2274.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0D6B9W1_RHOSU1.620e-2173.023-hydroxyacyl-CoA dehydrogenase n=11 Tax=Rhodovulu... [more]
A0A482SBJ5_9ARCH2.810e-2179.373-hydroxyacyl-CoA dehydrogenase n=1 Tax=archaeon T... [more]
A0A547Q9G3_9RHOB4.500e-2176.19SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11875contigH-paniculata_contig11875:1829..2601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue9.1e-20
Seed eggNOG ortholog157072.XP_008870894.1
Preferred nameHSD17B10
KEGG rclassRC00525
KEGG koko:K08683
KEGG ReactionR04203
KEGG Pathwayko00280,ko01100,ko01110,ko01130,ko05010,map00280,map01100,map01110,map01130,map05010
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0000166,GO:0000959,GO:0000963,GO:0000964,GO:0000965,GO:0000966,GO:0001510,GO:0001540,GO:0002165,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003857,GO:0004303,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005829,GO:0005886,GO:0006066,GO:0006082,GO:0006139,GO:0006163,GO:0006396,GO:0006399,GO:0006400,GO:0006520,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007548,GO:0007568,GO:0007569,GO:0008033,GO:0008134,GO:0008150,GO:0008152,GO:0008202,GO:0008205,GO:0008209,GO:0008210,GO:0008289,GO:0008406,GO:0008584,GO:0008709,GO:0009056,GO:0009063,GO:0009081,GO:0009083,GO:0009117,GO:0009150,GO:0009259,GO:0009295,GO:0009451,GO:0009791,GO:0009987,GO:0010467,GO:0010817,GO:0012505,GO:0016020,GO:0016043,GO:0016054,GO:0016070,GO:0016125,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0018454,GO:0019637,GO:0019693,GO:0019752,GO:0022414,GO:0022607,GO:0030154,GO:0030283,GO:0030331,GO:0030488,GO:0030677,GO:0030678,GO:0031123,GO:0031974,GO:0032259,GO:0032501,GO:0032502,GO:0032787,GO:0032991,GO:0033218,GO:0033327,GO:0033764,GO:0033865,GO:0033875,GO:0034032,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0034754,GO:0035257,GO:0035258,GO:0035383,GO:0036094,GO:0042180,GO:0042277,GO:0042445,GO:0042645,GO:0042780,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043436,GO:0043603,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044260,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045455,GO:0046395,GO:0046483,GO:0046546,GO:0046661,GO:0047022,GO:0047035,GO:0048037,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050662,GO:0051186,GO:0051259,GO:0051260,GO:0051262,GO:0051287,GO:0051289,GO:0051427,GO:0055086,GO:0055114,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0070900,GO:0070901,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0090304,GO:0090646,GO:0097159,GO:0097745,GO:0098798,GO:0099116,GO:0140053,GO:1900864,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901615,GO:1902494,GO:1902555,GO:1902652,GO:1905348,GO:1990180,GO:1990904
EggNOG free text desc.3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity
EggNOG OGsKOG1199@1,KOG1199@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-18_002070.1
EC1.1.1.178,1.1.1.35
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04147
Exons1
Model size773
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11875.1201.1prot_H-paniculata_contig11875.1201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11875 2291..2515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.2253263-UTR-H-paniculata_contig11875:1828..22901622928899.2253263-UTR-H-paniculata_contig11875:1828..2290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11875 1829..2290 +
1691480661.1581476-UTR-H-paniculata_contig11875:1828..22901691480661.1581476-UTR-H-paniculata_contig11875:1828..2290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11875 1829..2290 +
1622928899.261756-UTR-H-paniculata_contig11875:2515..26011622928899.261756-UTR-H-paniculata_contig11875:2515..2601Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11875 2516..2601 +
1691480661.183101-UTR-H-paniculata_contig11875:2515..26011691480661.183101-UTR-H-paniculata_contig11875:2515..2601Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11875 2516..2601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.2429333-CDS-H-paniculata_contig11875:2290..25151622928899.2429333-CDS-H-paniculata_contig11875:2290..2515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11875 2291..2515 +
1691480661.1742127-CDS-H-paniculata_contig11875:2290..25151691480661.1742127-CDS-H-paniculata_contig11875:2290..2515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11875 2291..2515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11875.1201.1

>prot_H-paniculata_contig11875.1201.1 ID=prot_H-paniculata_contig11875.1201.1|Name=mRNA_H-paniculata_contig11875.1201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MMTTISTTERKGLFLTPLLAGLPEEVRTQLGSTVPNPPRLGRPEEYAQVV
ESIIDNNMLNGEVIRLDGALRMPP*
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mRNA from alignment at H-paniculata_contig11875:1829..2601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11875.1201.1 ID=mRNA_H-paniculata_contig11875.1201.1|Name=mRNA_H-paniculata_contig11875.1201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=773bp|location=Sequence derived from alignment at H-paniculata_contig11875:1829..2601+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGCGACTGCGAGTGGCTACTTAGCATACAGGTGGAGCTGTGACTG
CATTGCGGTCTGTATGATACTGGTCTTGGTATTATGGGTGGCCGATACAG
CGAACAAGAAAGCAGACTGAACTCTTCGTTTACATGAGAAGACTTTGAGG
AGATACATGCTTTTCCTGTGACCGTAATCATCCATATGTAAATATAGCAT
CCACTTGATACTGAAGGATGTTTGTTGGTCAATGATTGATGGCCTGATGA
GAAGGCAGGTCCCCCCCTCCCTCCCCCTATGGGAATTAGTGGAGCGTTCT
TTTGCGCCTTTTGATTACCGTGTGTATCATGTTTCGTTCTTCCGCTTCGT
TTACTTTTTGACGATCCCGAATTGTTCTTGTCTTTCGTATATATATTTTT
TTTAATATTTGCCAACTAATGGATAATGACAACAACTGGGTATTGGCAAC
GACAACGATTGGATGATGACTACAATATCAACAACTGAACGGAAAGGTCT
GTTCTTGACGCCGTTGCTGGCGGGTCTTCCGGAAGAGGTCCGCACTCAAC
TCGGTTCCACCGTGCCAAACCCGCCAAGGTTAGGCCGCCCAGAAGAATAT
GCACAGGTGGTGGAGAGCATCATCGATAACAACATGCTTAACGGAGAAGT
CATTCGACTCGATGGCGCCTTGAGAATGCCTCCATGACAGGAACGATCGA
TACCGTTTACGATCGGTCATTTCATTTGCTACCCTACTCAATACAGAGAA
AGTGGGGTGGGTGTGTGTGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig11875:1829..2601+

>mRNA_H-paniculata_contig11875.1201.1 ID=mRNA_H-paniculata_contig11875.1201.1|Name=mRNA_H-paniculata_contig11875.1201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig11875:1829..2601+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGACTACAATATCAACAACTGAACGGAAAGGTCTGTTCTTGACGCC
GTTGCTGGCGGGTCTTCCGGAAGAGGTCCGCACTCAACTCGGTTCCACCG
TGCCAAACCCGCCAAGGTTAGGCCGCCCAGAAGAATATGCACAGGTGGTG
GAGAGCATCATCGATAACAACATGCTTAACGGAGAAGTCATTCGACTCGA
TGGCGCCTTGAGAATGCCTCCATGAATGATGACTACAATATCAACAACTG
AACGGAAAGGTCTGTTCTTGACGCCGTTGCTGGCGGGTCTTCCGGAAGAG
GTCCGCACTCAACTCGGTTCCACCGTGCCAAACCCGCCAAGGTTAGGCCG
CCCAGAAGAATATGCACAGGTGGTGGAGAGCATCATCGATAACAACATGC
TTAACGGAGAAGTCATTCGACTCGATGGCGCCTTGAGAATGCCTCCATGA
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