mRNA_H-paniculata_contig11866.1197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11866.1197.1
Unique NamemRNA_H-paniculata_contig11866.1197.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: D8LTL7_ECTSI (Heavy metal translocating P-type ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL7_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.950e-18
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 MSKPTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGIS 204
            M+KPTLTDV++ G  N +DSVLA AA+AEA SEHP+G AIV+A+RARG+S+   AV GFQ+TPGMG+S
Sbjct:  975 MNKPTLTDVLSQGAANTKDSVLALAASAEASSEHPVGTAIVEASRARGVSKLEPAVEGFQSTPGMGVS 1042          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: A0A260A7Y5_9NOCA (Copper-translocating P-type ATPase n=28 Tax=root TaxID=1 RepID=A0A260A7Y5_9NOCA)

HSP 1 Score: 60.1 bits (144), Expect = 6.440e-9
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    7 KPTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGIS 204
            +PT+T V   G R   D+VLA AAAAEA SEHPL RAIV+AARAR L+  V A AGFQ++P +G++
Sbjct:  405 EPTVTAVEVTGGRT-ADNVLALAAAAEADSEHPLARAIVEAARARNLT--VPAAAGFQSSPAVGVA 467          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: UPI001F0FC12F (cadmium-translocating P-type ATPase n=1 Tax=Gordonia sp. ABSL49_1 TaxID=2920941 RepID=UPI001F0FC12F)

HSP 1 Score: 59.7 bits (143), Expect = 8.770e-9
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    7 KPTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGI 201
            +P +TD+VA    +D D VLA AAAAE  SEHPLGRAIV+AA  R +  +V+AVA F A PG G+
Sbjct:  350 QPVVTDIVALDETHDPDQVLAIAAAAENDSEHPLGRAIVEAAAQREI--RVAAVADFAALPGRGV 412          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: A0A5B9EVU4_9RHOB (Copper-translocating P-type ATPase n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A5B9EVU4_9RHOB)

HSP 1 Score: 59.7 bits (143), Expect = 8.830e-9
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    7 KPTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGIS 204
            +P LTD++A  +  D D +LAQ AA EALSEHPLGRA+VQAA+ +GL+  V  V  F A  G G+S
Sbjct:  509 RPVLTDIMA--LNGDEDGLLAQVAAVEALSEHPLGRAVVQAAKDKGLTLPV--VKDFTAITGFGLS 570          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: A0A1Z4EEJ3_9MYCO (Cadmium-translocating P-type ATPase n=2 Tax=Mycobacterium shigaense TaxID=722731 RepID=A0A1Z4EEJ3_9MYCO)

HSP 1 Score: 58.5 bits (140), Expect = 2.240e-8
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   10 PTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGI 201
            P LT + A   R   D VL  AA+AE  SEHPLGRA+V AARARGL+  +S  A FQA PG G+
Sbjct:  349 PQLTSIAATDDRYSDDDVLRIAASAEQFSEHPLGRAVVSAARARGLA--LSDAADFQALPGRGV 410          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: UPI001C55BA68 (heavy metal translocating P-type ATPase n=1 Tax=Streptomyces sp. JJ38 TaxID=2738128 RepID=UPI001C55BA68)

HSP 1 Score: 58.2 bits (139), Expect = 3.070e-8
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   10 PTLTDVVAY-GVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGIS 204
            P + DV    G   D D +LA AAAAE  SEHPLGRA+V+AAR RGL   ++A  GF ATPG G+S
Sbjct:  350 PVVADVCPLPGGALDEDGLLALAAAAERGSEHPLGRAVVEAARGRGLD--LAAAEGFAATPGSGVS 413          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: A0A4R8SUG8_9MYCO (Copper-exporting P-type ATPase B n=38 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A4R8SUG8_9MYCO)

HSP 1 Score: 57.8 bits (138), Expect = 4.190e-8
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   10 PTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGIS 204
            PT+T V     R D D+VLA AAAAEA SEHPL RAIV+AAR RGL  +V+A +GF + P +G++
Sbjct:  337 PTVTGVEPIDGR-DADAVLALAAAAEADSEHPLARAIVEAARGRGL--RVTAASGFSSEPALGVT 398          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: A0A4Y4E2U3_CELCE (Copper-translocating P-type ATPase n=2 Tax=Cellulosimicrobium cellulans TaxID=1710 RepID=A0A4Y4E2U3_CELCE)

HSP 1 Score: 57.4 bits (137), Expect = 5.730e-8
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    7 KPTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGI 201
            +PT+T+V A G  +D+D+VLA AAAAE+ SEHPL RAIV+AAR RGL   V++   FQ++P +G+
Sbjct:  320 EPTVTEVEATG-DHDQDTVLALAAAAESDSEHPLARAIVRAARDRGLP--VASAQDFQSSPAVGV 381          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: A0A0M2HBX6_9MICO (Copper-exporting P-type ATPase B n=6 Tax=Microbacterium TaxID=33882 RepID=A0A0M2HBX6_9MICO)

HSP 1 Score: 57.0 bits (136), Expect = 7.860e-8
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    7 KPTLTDVVAYGVRN----DRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGIS 204
            +PT+ DV +  V      D D VLA AAAAEA SEHPL +AIV+AA+ RGL+  V+  +GFQ++P +G++
Sbjct:  401 EPTVVDVASVAVTGEDPIDADGVLALAAAAEADSEHPLAKAIVRAAKERGLA--VAPASGFQSSPAVGVT 468          
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Match: A0A3S2XIT8_9HYPH (Copper-translocating P-type ATPase n=1 Tax=Methylobacterium oryzihabitans TaxID=2499852 RepID=A0A3S2XIT8_9HYPH)

HSP 1 Score: 57.0 bits (136), Expect = 7.880e-8
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    7 KPTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLSRQVSAVAGFQATPGMGIS 204
            +P LTD++    + D DSVLA AAA E  SEHPLGRA+V AA ARGL+  V AV+  +A PG G++
Sbjct:  503 RPALTDLIPVPGQ-DPDSVLALAAALETRSEHPLGRAVVAAAEARGLA--VPAVSAVEAVPGFGLA 565          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11866.1197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTL7_ECTSI3.950e-1866.18Heavy metal translocating P-type ATPase n=2 Tax=Ec... [more]
A0A260A7Y5_9NOCA6.440e-959.09Copper-translocating P-type ATPase n=28 Tax=root T... [more]
UPI001F0FC12F8.770e-956.92cadmium-translocating P-type ATPase n=1 Tax=Gordon... [more]
A0A5B9EVU4_9RHOB8.830e-954.55Copper-translocating P-type ATPase n=2 Tax=Rhodoba... [more]
A0A1Z4EEJ3_9MYCO2.240e-856.25Cadmium-translocating P-type ATPase n=2 Tax=Mycoba... [more]
UPI001C55BA683.070e-856.06heavy metal translocating P-type ATPase n=1 Tax=St... [more]
A0A4R8SUG8_9MYCO4.190e-856.92Copper-exporting P-type ATPase B n=38 Tax=Mycobact... [more]
A0A4Y4E2U3_CELCE5.730e-855.38Copper-translocating P-type ATPase n=2 Tax=Cellulo... [more]
A0A0M2HBX6_9MICO7.860e-850.00Copper-exporting P-type ATPase B n=6 Tax=Microbact... [more]
A0A3S2XIT8_9HYPH7.880e-854.55Copper-translocating P-type ATPase n=1 Tax=Methylo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11866contigH-paniculata_contig11866:6366..7237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D8LTL7
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size205
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.7426164-CDS-H-paniculata_contig11866:6365..64011622928896.7426164-CDS-H-paniculata_contig11866:6365..6401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 6366..6401 +
1691480660.4968262-CDS-H-paniculata_contig11866:6365..64011691480660.4968262-CDS-H-paniculata_contig11866:6365..6401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 6366..6401 +
1622928896.7532883-CDS-H-paniculata_contig11866:7069..72371622928896.7532883-CDS-H-paniculata_contig11866:7069..7237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 7070..7237 +
1691480660.5079918-CDS-H-paniculata_contig11866:7069..72371691480660.5079918-CDS-H-paniculata_contig11866:7069..7237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 7070..7237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11866.1197.1prot_H-paniculata_contig11866.1197.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11866 6366..7237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11866.1197.1

>prot_H-paniculata_contig11866.1197.1 ID=prot_H-paniculata_contig11866.1197.1|Name=mRNA_H-paniculata_contig11866.1197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MSKPTLTDVVAYGVRNDRDSVLAQAAAAEALSEHPLGRAIVQAARARGLS
RQVSAVAGFQATPGMGIS
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mRNA from alignment at H-paniculata_contig11866:6366..7237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11866.1197.1 ID=mRNA_H-paniculata_contig11866.1197.1|Name=mRNA_H-paniculata_contig11866.1197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=872bp|location=Sequence derived from alignment at H-paniculata_contig11866:6366..7237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAAGCCAACTCTCACGGACGTGGTGGCATACGTAGGTTTGCGTGC GTGCTTGCGTGCAACACGACCACATCGATTTGCAGCAAAAAAATTGTGTA TCTGTGTCAGTCTTACTGCGTTGGGCGTGCCGGGTTGCTCTATAAGTTTT GTCTGATGACCCAGATGGCTGTACACAAAAAGACTTTTTATTATGATGTG TAGATATGCGTGATTTAGGTGAACACCCACACCGAGAAAACAGGGTTTGT GAAAACAAGAAATCCCTTGGTAAGTTTTACGTCGCTCCATTGCCTCACCC GGCAGTCACCAACTATGGTGATGATGACGATGATGATGATGATGGTATTC TGAGGGAACCCTAAATACAGTACGTTACTGGCCTGATGTTAAGACTTGAA GTGGCGAGGGTGTCTGAGCCACTGGCTCACTTGCCTACAGGCTTACTTAC TAGTAGTCAAGGCAAACTTAAGCATAGATAAATGCCAACGCGTCATATGA TCTAGCATGTACGTGCCGTCACACAGGGTGCGCGTAACAATGACGATGAT GATAACGACGATGCTCGGAAGGGAGTCTAACTAAAAGACTCTTCTGACAT ACTCGCCCCCTGGCTCACTATCTTTATCTTTATTCGTTAAGCAAAATGAC GCTTGAACGCGAATGCTTCGTCTATCTACCGTATGCATGCTGTCCATCAT ACAGGGCGTGCGCAATGACCGGGACTCGGTCTTGGCGCAAGCGGCCGCGG CGGAGGCGTTGAGCGAGCACCCCCTCGGCAGAGCTATCGTCCAGGCGGCG CGCGCACGTGGACTATCTCGGCAAGTCTCTGCCGTCGCCGGTTTTCAGGC GACTCCTGGGATGGGCATTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig11866:6366..7237+

>mRNA_H-paniculata_contig11866.1197.1 ID=mRNA_H-paniculata_contig11866.1197.1|Name=mRNA_H-paniculata_contig11866.1197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig11866:6366..7237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAAGCCAACTCTCACGGACGTGGTGGCATACATGAGCAAGCCAAC
TCTCACGGACGTGGTGGCATACGGCGTGCGCAATGACCGGGACTCGGTCT
TGGCGCAAGCGGCCGCGGCGGAGGCGTTGAGCGAGCACCCCCTCGGCAGA
GCTATCGTCCAGGCGGCGCGCGCACGTGGACTATCTCGGCAAGTCTCTGC
CGTCGCCGGTTTTCAGGCGACTCCTGGGATGGGCATTTCGGGCGTGCGCA
ATGACCGGGACTCGGTCTTGGCGCAAGCGGCCGCGGCGGAGGCGTTGAGC
GAGCACCCCCTCGGCAGAGCTATCGTCCAGGCGGCGCGCGCACGTGGACT
ATCTCGGCAAGTCTCTGCCGTCGCCGGTTTTCAGGCGACTCCTGGGATGG
GCATTTCG
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