mRNA_H-paniculata_contig11848.1186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11848.1186.1
Unique NamemRNA_H-paniculata_contig11848.1186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY)

HSP 1 Score: 101 bits (251), Expect = 6.670e-24
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +   + + G+VDADYA +V+DR+STTGY F L+GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct:   94 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 193
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9HGZ8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGZ8_FAGSY)

HSP 1 Score: 103 bits (256), Expect = 8.700e-24
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +   + + G+VDADYA +V+DR+STTGY F L+GG ICW S  Q +VT S+TE E +AA E  KE ++L
Sbjct:  271 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVTMSTTEAEYMAAAETAKEALWL 370
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY)

HSP 1 Score: 103 bits (256), Expect = 1.850e-23
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +S  + + G+VDADYA +V+DR+STTGY F L+GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct:  789 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 888
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9GRR2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GRR2_FAGSY)

HSP 1 Score: 103 bits (256), Expect = 1.870e-23
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +S  + + G+VDADYA +V+DR+STTGY F L+GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct: 1071 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 1170
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9GLA7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GLA7_FAGSY)

HSP 1 Score: 102 bits (255), Expect = 2.490e-23
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +   + + G+VDADYA DV+DR+STTGY F L+GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct:  582 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVIGYVDADYAGDVDDRRSTTGYLFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 681
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9GQ16_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GQ16_FAGSY)

HSP 1 Score: 102 bits (255), Expect = 2.560e-23
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +S  + + G+VDADYA +V+DR+STTGY F L+GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct:  724 MANPGREHWNAVKWIFRYLKGTVEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 823
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9GFK1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GFK1_FAGSY)

HSP 1 Score: 102 bits (254), Expect = 3.470e-23
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +S  + + G+VDADYA +V+DR+STTGY F L+GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct:  981 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYACEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEVLWL 1080
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: UPI000900BB8C (lignin-forming anionic peroxidase-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900BB8C)

HSP 1 Score: 101 bits (252), Expect = 4.130e-23
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M  P ++++   K I RYL      GI FG + N HVL G+VD+DYA D+++R+STTGY F L GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct:    1 MSKPGKQHWEAVKWILRYLRGTMEHGIVFGSQQNEHVLMGYVDSDYAGDMDNRRSTTGYVFTLGGGPICWRSSVQSIVALSTTEAEYMAVTEAAKEALWL 100
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9EUJ4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUJ4_FAGSY)

HSP 1 Score: 102 bits (253), Expect = 4.700e-23
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +   + + G+VDADYA +V+DR+STTGY F L+GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct:  869 MANPGREHWNAVKWIFRYLKGTAEYGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 968
[Close]
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Match: A0A2N9FSJ8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FSJ8_FAGSY)

HSP 1 Score: 102 bits (253), Expect = 4.740e-23
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDVEDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL 300
            M NP RE+++  K IFRYL      GI F  +   + + G+VDADYA +V+DR+STTGY F L+GG ICW S  Q +V  S+TE E +A  EA KE ++L
Sbjct: 1115 MANPGREHWNAVKWIFRYLKDTAKHGILFSRQPGTNSVAGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 1214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11848.1186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9GS71_FAGSY6.670e-2449.00Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
A0A2N9HGZ8_FAGSY8.700e-2450.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HJ76_FAGSY1.850e-2350.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GRR2_FAGSY1.870e-2350.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9GLA7_FAGSY2.490e-2350.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9GQ16_FAGSY2.560e-2350.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GFK1_FAGSY3.470e-2350.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
UPI000900BB8C4.130e-2348.00lignin-forming anionic peroxidase-like n=1 Tax=Ipo... [more]
A0A2N9EUJ4_FAGSY4.700e-2349.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9FSJ8_FAGSY4.740e-2349.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11848contigH-paniculata_contig11848:1516..1824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score95.1
Seed ortholog evalue2e-17
Seed eggNOG ortholog7425.NV17956-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.5228353-CDS-H-paniculata_contig11848:1515..18241622928895.5228353-CDS-H-paniculata_contig11848:1515..1824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11848 1516..1824 -
1691480659.9285073-CDS-H-paniculata_contig11848:1515..18241691480659.9285073-CDS-H-paniculata_contig11848:1515..1824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11848 1516..1824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11848.1186.1prot_H-paniculata_contig11848.1186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11848 1516..1824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11848.1186.1

>prot_H-paniculata_contig11848.1186.1 ID=prot_H-paniculata_contig11848.1186.1|Name=mRNA_H-paniculata_contig11848.1186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MGNPCREYFSTRKRIFRYLTTVPNLGITFGGKSNGHVLEGFVDADYAEDV
EDRKSTTGYFFKLNGGAICWCSRKQQLVTWSSTEGECVAAGEAGKETVYL
GS*
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mRNA from alignment at H-paniculata_contig11848:1516..1824-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11848.1186.1 ID=mRNA_H-paniculata_contig11848.1186.1|Name=mRNA_H-paniculata_contig11848.1186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig11848:1516..1824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAACCCATGTCGGGAATATTTCAGTACACGTAAGCGCATTTTTCG
TTATCTCACGACTGTGCCTAACCTCGGCATTACGTTCGGCGGTAAGAGCA
ATGGTCACGTTCTGGAAGGATTCGTTGATGCCGATTATGCGGAAGATGTC
GAGGACCGAAAGTCCACAACAGGATACTTTTTCAAGCTGAACGGTGGTGC
GATCTGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAG
AGGGAGAGTGCGTTGCTGCAGGAGAAGCGGGAAAGGAGACAGTATATCTA
GGGAGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11848:1516..1824-

>mRNA_H-paniculata_contig11848.1186.1 ID=mRNA_H-paniculata_contig11848.1186.1|Name=mRNA_H-paniculata_contig11848.1186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig11848:1516..1824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAACCCATGTCGGGAATATTTCAGTACACGTAAGCGCATTTTTCG
TTATCTCACGACTGTGCCTAACCTCGGCATTACGTTCGGCGGTAAGAGCA
ATGGTCACGTTCTGGAAGGATTCGTTGATGCCGATTATGCGGAAGATGTC
GAGGACCGAAAGTCCACAACAGGATACTTTTTCAAGCTGAACGGTGGTGC
GATCTGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAG
AGGGAGAGTGCGTTGCTGCAGGAGAAGCGGGAAAGGAGACAGTATATCTA
GGGAGTTAAATGGGGAACCCATGTCGGGAATATTTCAGTACACGTAAGCG
CATTTTTCGTTATCTCACGACTGTGCCTAACCTCGGCATTACGTTCGGCG
GTAAGAGCAATGGTCACGTTCTGGAAGGATTCGTTGATGCCGATTATGCG
GAAGATGTCGAGGACCGAAAGTCCACAACAGGATACTTTTTCAAGCTGAA
CGGTGGTGCGATCTGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGT
CCAGTACAGAGGGAGAGTGCGTTGCTGCAGGAGAAGCGGGAAAGGAGACA
GTATATCTAGGGAGTTAA
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