mRNA_H-paniculata_contig11800.1153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11800.1153.1
Unique NamemRNA_H-paniculata_contig11800.1153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11800.1153.1 vs. uniprot
Match: D7FSJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ1_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 3.140e-49
Identity = 104/158 (65.82%), Postives = 121/158 (76.58%), Query Frame = 1 
Query:  160 QLRRSVATRKRHEERGYSARSRAKLLGTDDGAGGGVIRRRGRPAGRGGENNAHSGGAAGEAREMKLSLQRTRKMMAEQLERVAQVSEVMGEQDALLRDTFQQHQARGIGGTVRRARTTLHRLKAADMMDTVFMVGSTCVFFASVCFVLYQRLPTFGLL 633
            +LRR+V  RKRHEER Y A SRA LLG + G G    RRRG  +    ++    G AAG+AREMK SLQRTRKMMAEQL RVAQVSEVMGEQDALL +TF +HQ  GIGG+++RA TTL RLKAA++MDT+ MV ST VFFA+VCFV+YQRLP  GLL
Sbjct:    2 ELRRAVTLRKRHEERRYDATSRAALLGAEGGDG---PRRRGYNSXXXXDDTP--GSAAGDAREMKQSLQRTRKMMAEQLARVAQVSEVMGEQDALLMNTFAEHQ--GIGGSLKRAGTTLTRLKAAEVMDTIIMVASTFVFFATVCFVIYQRLPLLGLL 152
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BLAST of mRNA_H-paniculata_contig11800.1153.1 vs. uniprot
Match: A0A6H5JZD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD2_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 7.740e-45
Identity = 108/167 (64.67%), Postives = 125/167 (74.85%), Query Frame = 1 
Query:    1 KAFNNSSIRTVAAARDALVDARYEAEQRDG-------ETDGDA-LVTKVVQAERDLEHLRSQLRRSVATRKRHEERGYSARSRAKLLGTDDGAGGGVIRRRGRPAGRGGENNAHSGGAAGEAREMKLSLQRTRKMMAEQLERVAQVSEVMGEQDALLRDTFQQHQAR 477
            +AFNN+SIRTVAA RDAL +ARYE EQ +         TDG +  + KVVQAERDLEH+R +LRR+V  RKRHEER Y A +RA LLG + G G    RRRG  +G GG ++A  G AAG+AREMK SLQRTRKMMAEQL RVAQVSEVMGEQDALL +TF +HQAR
Sbjct:   45 EAFNNASIRTVAACRDALTEARYEGEQHEAGXXXXXXXTDGGSDSLAKVVQAERDLEHVRMELRRAVTLRKRHEERRYDATNRAALLGAECGDG---PRRRGYNSG-GGSDDA-PGSAAGDAREMKQSLQRTRKMMAEQLARVAQVSEVMGEQDALLMNTFAEHQAR 206
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BLAST of mRNA_H-paniculata_contig11800.1153.1 vs. uniprot
Match: A0A835ZB28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB28_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.460e-18
Identity = 49/106 (46.23%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:  313 AHSGGAAGEAREMKLSLQRTRKMMAEQLERVAQVSEVMGEQDALLRDTFQQHQARGIGGTVRRARTTLHRLKAADMMDTVFMVGSTCVFFASVCFVLYQRLPTFGL 630
            A   G+  ++  +  SL R+R++MAEQ+ R++ V++++GEQD LLRDT ++H  +G+GGTV RA   L RL A  +MD V M  ST +FFA+V +V++ R+P FGL
Sbjct:  113 AEDDGSGDQSAAVASSLARSRRVMAEQVARMSSVAQLVGEQDQLLRDTAEEH--KGVGGTVGRASMLLTRLNAQAIMDAVAMAASTAMFFAAVLYVIWARVPGFGL 216
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BLAST of mRNA_H-paniculata_contig11800.1153.1 vs. uniprot
Match: K0S878_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S878_THAOC)

HSP 1 Score: 56.2 bits (134), Expect = 8.270e-7
Identity = 31/96 (32.29%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:  328 AAGEAREMKLSLQRTRKMMAEQLERVAQVSEVMGEQDALLRDTFQQHQARGIGGTVRRARTTLHRLKAADMMDTVFMVGSTCVFFASVCFVLYQRL 615
            A  +A+ +  SL+RT+ M++++L+RVA ++  + +  ALL +T  +H+  G+GGT++ A++T+H+L   D+ D   +  +   ++A V +VL+ R+
Sbjct:   23 ATHQAQSVTTSLRRTKDMLSQELDRVANLNTTIVDDGALLSETKDEHE--GMGGTMKGAKSTMHKLGRQDIRDAFVLRMAIVFYWACVAYVLWTRI 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11800.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSJ1_ECTSI3.140e-4965.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZD2_9PHAE7.740e-4564.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZB28_9STRA8.460e-1846.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0S878_THAOC8.270e-732.29Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11800contigH-paniculata_contig11800:1768..4880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSec20
Ec32 orthologEc-11_003900.1
Exons4
Model size636
Cds size636
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11800.1153.1prot_H-paniculata_contig11800.1153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11800 1768..4880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928890.780939-CDS-H-paniculata_contig11800:1767..18871622928890.780939-CDS-H-paniculata_contig11800:1767..1887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11800 1768..1887 +
1691480658.3838563-CDS-H-paniculata_contig11800:1767..18871691480658.3838563-CDS-H-paniculata_contig11800:1767..1887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11800 1768..1887 +
1622928890.7998583-CDS-H-paniculata_contig11800:2434..25831622928890.7998583-CDS-H-paniculata_contig11800:2434..2583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11800 2435..2583 +
1691480658.401925-CDS-H-paniculata_contig11800:2434..25831691480658.401925-CDS-H-paniculata_contig11800:2434..2583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11800 2435..2583 +
1622928890.813238-CDS-H-paniculata_contig11800:3104..33121622928890.813238-CDS-H-paniculata_contig11800:3104..3312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11800 3105..3312 +
1691480658.4103076-CDS-H-paniculata_contig11800:3104..33121691480658.4103076-CDS-H-paniculata_contig11800:3104..3312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11800 3105..3312 +
1622928890.8257291-CDS-H-paniculata_contig11800:4721..48801622928890.8257291-CDS-H-paniculata_contig11800:4721..4880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11800 4722..4880 +
1691480658.4179335-CDS-H-paniculata_contig11800:4721..48801691480658.4179335-CDS-H-paniculata_contig11800:4721..4880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11800 4722..4880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11800.1153.1

>prot_H-paniculata_contig11800.1153.1 ID=prot_H-paniculata_contig11800.1153.1|Name=mRNA_H-paniculata_contig11800.1153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
KAFNNSSIRTVAAARDALVDARYEAEQRDGETDGDALVTKVVQAERDLEH
LRSQLRRSVATRKRHEERGYSARSRAKLLGTDDGAGGGVIRRRGRPAGRG
GENNAHSGGAAGEAREMKLSLQRTRKMMAEQLERVAQVSEVMGEQDALLR
DTFQQHQARGIGGTVRRARTTLHRLKAADMMDTVFMVGSTCVFFASVCFV
LYQRLPTFGLL*
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mRNA from alignment at H-paniculata_contig11800:1768..4880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11800.1153.1 ID=mRNA_H-paniculata_contig11800.1153.1|Name=mRNA_H-paniculata_contig11800.1153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3113bp|location=Sequence derived from alignment at H-paniculata_contig11800:1768..4880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGTTCAACAACTCCAGTATCCGAACTGTTGCAGCTGCGCGTGATGC
CCTTGTGGATGCTCGATACGAGGCGGAGCAGCGTGACGGTGAAACAGACG
GAGACGCTCTTGTAACGAAGGTGATGCGGCACAGCGCAGTGCGTATTTCG
TCGTATAGTTTTTGACGCCAGGTGCAGCACGGTTGCGCTTTTTTATCCTC
GACCACAATGGTGCATTTTCTCATGTGCTCACCGGTGTCTTCATCGGTTA
TCTTTGTCCCTTTTCCACCCTCTCTCTCACCTCCCCCAAAACCGTCGATA
GAGGCTAAGTTGAATTTCGCAGAAACTCGACCCGCTGCCCCCATTAGTTT
GGTCGGTTTGTGGAATCATTTCTCAGCAATATGAAACCATTAAGCCTACC
TCCAATTTTCATATATGGCTGTTCTAACTATTTCTATTCGTACCTTCATG
TGTTTCAAGTCTTTTTCCCGTGTTGTTTTCGATGTTGCACTGTTGTTGAA
GGTGTCCTCCTTGACAAGAGATGCACATGTTGTTGATGCTGTACTGTTGT
TGAAGGTGTCCTCCTTGGCAAGAGGTGCACGTGTTGTTGTCGCTTTTATT
GCGCTTTGTATGTAAGAGTCTCCCTCACCCTCCCTACGTTTTTCTTGGGC
TATGTATACGCGTAAAGGTTGTACAAGCTGAGAGAGATCTGGAGCACCTG
CGATCGCAGCTGCGAAGATCTGTTGCCACTCGAAAGCGACATGAGGAGAG
GGGCTACAGTGCCCGCAGCAGGGCGAAACTTCTGGGCACGGATGATGGGG
CTGGCGGCGGCGTGATGTGAGCGATGGTGCTAGCAGCCGACTGACGGCCG
ACTGAGAGCTCTCGCCTCCATTGCTGATAATTATTGTCGGCATGATATTG
GTTGATCCTAAATCATGGGCTAAACTTGCGAAATTTGCCAAATCCTTGCG
GGGGCGGGGGGGAAAGGGGGTAAGCGTTCTCGTAGTTCGAAGTTATTAGC
CGTTATATCACTTGATCACATGCTCTCGGAGAGCGAAGCGTTGCTCTCAT
AGGAGCAATTGCCGATTGCTAATCTCTACTTTAAGAGGAGTGGCGTAGTG
GTGGTGGGAGGGGGGGAAGGTGGGACGGGGAGATTAACTACAAGTAGCGT
GATGGTATCTTATTCACAAACTGACCGAACTAGAGGGCAAGCACAACCAC
TGAGTATCCTCAGCTGCCGTATCCGGCTATGCGTGTGGAACATCGGTGAC
ACCACTGCTAACGCTTGTTTTGATTTGACTATATCTAACGGTTACGCACA
TATCGCCTTGTTTGTTTTCTCTTGTGATTTTGGTCAGTCGACGGCGGGGG
AGGCCCGCCGGGCGAGGCGGCGAAAACAATGCGCATTCTGGAGGTGCCGC
GGGAGAGGCTCGAGAGATGAAGCTGTCTCTTCAACGCACAAGGAAAATGA
TGGCAGAGCAGTTGGAGCGGGTGGCGCAGGTGTCGGAGGTTATGGGGGAG
CAGGATGCATTGTTGAGGGATACTTTCCAGCAGCACCAGGCAAGGGTCAA
TTCACGGTGGCTGGTAGTTGGTGGTCGTTAACCGTGGAAGCACCGATTTT
GAGTCGGCAGTGTACTGCTATTCTTGGTGTCAAAATTCTCCGAGGCCAAC
TGGGGTGGGACAAACACTCTGTATATTATATTGGATGAGTTTCGCATCTT
TTAGGTGGGCTTGTAGATGCCCCTCTGAACTTCGACGACGACAGTACCAA
ACCACGCACTGTGTGTTGTGGCTCGCTATAGGTACGGTGTGACAGCGCCT
TCTCAATCCTGTTTCTACTTCGCCCATGTCCGACAGAACACAGTAGCGGC
AACAGCAGTACGCAGCACAAAAGGAATCGCACTGAGCGATAGATAGGTAC
TGTATTATTTTTCCTGTCTCTCGTCGATTGTTGCCGCCCGCCACTCCGGC
CCGCCCGCCATCGCCCCAGTGGTCCTTCGGTCTGTTCAGCATTCAACCTC
GACACTTTTGCAAGGGGTACTTGTATACTTTCTCTCTGCCATGAGTAAAG
TCGGTTGTGTTTGGGGGATCATATCTCCAGATCTGAGACTGTTCAGAGGC
AGCAGTTTGAATCGTTGGAAGGCTGAAGTCTGATAGACTCGTCTGCACTA
TTCGGAAGTGCATTCTAATTCGTGTATCAGAAGTACTGGCCGCTTAACAT
TGGGCTAAGTTCGACCATTTTCCATGTTTTTTTTGTATTTTATATTTTCC
ATTGGGAAAATACGAAAAGTGGCAAATTATGGCCTTTTTTCGGCCGACTC
TTTTTTGCGCCACACGCCCTCCGAATGGATTTCGCCAATTTACTTGACAT
TTTGGAGATTAACCCTAAAAATGTGTTGGATTATAACTTATGAAAAAATC
AGAGATGGTTCCGTGCCTCTATAAGCTCAACCGACTTTACTTACGGCACA
GAAAAGGTATACTAGTAGTATAGCCACAGCTACATGGAGTGCCTTTTCCC
CCACCCCTTTCTGCCGAACCCATGACCCATGCACACCTTGTACTCGCTGT
GCTGTCATGCAGGCGTGATGTCCGTTAAAATTTGTGTCGAGAAGATACTT
GAGCACAGCATCGATATACTGTTGTGAAACTGTTATCGCCTTAGGGTATC
ATATAGTAGGGATGCAATCAAATCGAGGGATGCCGTGAATATGGCCCCGA
ACTAAAACTATGATCCAGTCGCGGTCAAAGGATTTATACCTTCATTCCTA
TCATAGCCCCCTTCTTAATTTGCTCTCTGTTAGTACGGTGCGCATGTTGC
AGAGTAGGTGCTAGTTTTCCTCTGCGGGATTTTGGCTATTTGCAGGAGAG
TCCCCATTTCCTTTAAGTAGCCACCGTTCTGTCATCATTCATAATTGACT
TTCTACACGACCTGCTGTGTTGCGAATCGCTGTGCCATTTGATTTCTTGG
GCAGGGAATTGGCGGCACCGTCCGGCGGGCACGCACGACCTTGCATCGTC
TCAAGGCTGCCGACATGATGGACACAGTTTTCATGGTTGGCTCGACGTGT
GTTTTTTTCGCCTCTGTGTGTTTTGTACTATATCAGAGATTACCCACTTT
CGGCCTCTTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11800:1768..4880+

>mRNA_H-paniculata_contig11800.1153.1 ID=mRNA_H-paniculata_contig11800.1153.1|Name=mRNA_H-paniculata_contig11800.1153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig11800:1768..4880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCGTTCAACAACTCCAGTATCCGAACTGTTGCAGCTGCGCGTGATGC
CCTTGTGGATGCTCGATACGAGGCGGAGCAGCGTGACGGTGAAACAGACG
GAGACGCTCTTGTAACGAAGAAGGCGTTCAACAACTCCAGTATCCGAACT
GTTGCAGCTGCGCGTGATGCCCTTGTGGATGCTCGATACGAGGCGGAGCA
GCGTGACGGTGAAACAGACGGAGACGCTCTTGTAACGAAGGTTGTACAAG
CTGAGAGAGATCTGGAGCACCTGCGATCGCAGCTGCGAAGATCTGTTGCC
ACTCGAAAGCGACATGAGGAGAGGGGCTACAGTGCCCGCAGCAGGGCGAA
ACTTCTGGGCACGGATGATGGGGCTGGCGGCGGCGTGATGTTGTACAAGC
TGAGAGAGATCTGGAGCACCTGCGATCGCAGCTGCGAAGATCTGTTGCCA
CTCGAAAGCGACATGAGGAGAGGGGCTACAGTGCCCGCAGCAGGGCGAAA
CTTCTGGGCACGGATGATGGGGCTGGCGGCGGCGTGATTCGACGGCGGGG
GAGGCCCGCCGGGCGAGGCGGCGAAAACAATGCGCATTCTGGAGGTGCCG
CGGGAGAGGCTCGAGAGATGAAGCTGTCTCTTCAACGCACAAGGAAAATG
ATGGCAGAGCAGTTGGAGCGGGTGGCGCAGGTGTCGGAGGTTATGGGGGA
GCAGGATGCATTGTTGAGGGATACTTTCCAGCAGCACCAGGCAAGGTCGA
CGGCGGGGGAGGCCCGCCGGGCGAGGCGGCGAAAACAATGCGCATTCTGG
AGGTGCCGCGGGAGAGGCTCGAGAGATGAAGCTGTCTCTTCAACGCACAA
GGAAAATGATGGCAGAGCAGTTGGAGCGGGTGGCGCAGGTGTCGGAGGTT
ATGGGGGAGCAGGATGCATTGTTGAGGGATACTTTCCAGCAGCACCAGGC
AAGGGGAATTGGCGGCACCGTCCGGCGGGCACGCACGACCTTGCATCGTC
TCAAGGCTGCCGACATGATGGACACAGTTTTCATGGTTGGCTCGACGTGT
GTTTTTTTCGCCTCTGTGTGTTTTGTACTATATCAGAGATTACCCACTTT
CGGCCTCTTGTGAGGAATTGGCGGCACCGTCCGGCGGGCACGCACGACCT
TGCATCGTCTCAAGGCTGCCGACATGATGGACACAGTTTTCATGGTTGGC
TCGACGTGTGTTTTTTTCGCCTCTGTGTGTTTTGTACTATATCAGAGATT
ACCCACTTTCGGCCTCTTGTGA
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