mRNA_H-paniculata_contig11799.1145.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11799.1145.1
Unique NamemRNA_H-paniculata_contig11799.1145.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: D8LN04_ECTSI (Myosin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN04_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 2.640e-118
Identity = 183/212 (86.32%), Postives = 198/212 (93.40%), Query Frame = 1
Query:    1 VAAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRDEVPPALHDLVLSSNDR 636
            VAA ARDAVAKALYS+LFDWLVEKINLTLTAAMNSKT  +  SNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEE+EF+ +GLS+VYVE CRVEFADNDDVLRLLEG+P G+LSLLKEESTLKTGTGL+LGKRYRQ F  NDRFA+PRARGG++ GTEA FG+VHFAGEVIYD+TEFVEKN+DEVP ALHDLVLSSNDR
Sbjct:  420 VAASARDAVAKALYSSLFDWLVEKINLTLTAAMNSKTAAN-TSNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEEEFAKQGLSKVYVEHCRVEFADNDDVLRLLEGKPQGILSLLKEESTLKTGTGLKLGKRYRQAFKGNDRFALPRARGGSRAGTEATFGIVHFAGEVIYDATEFVEKNKDEVPTALHDLVLSSNDR 630          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: A0A6H5JIF4_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIF4_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 2.660e-111
Identity = 183/212 (86.32%), Postives = 198/212 (93.40%), Query Frame = 1
Query:    1 VAAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRDEVPPALHDLVLSSNDR 636
            VAA ARDAVAKALYS+LFDWLVEKINLTLTAAMNSKT  +  SN+FIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEE+EF+ +GLS+VYVE CRVEFADNDDVLRLLEG+P G+LSLLKEESTLKTGTGL+LGKRYRQ F  NDRFA+PRARGGN+ GTEA FG+VHFAGEVIYD+TEFVEKN+DEVP ALHDLVLSSNDR
Sbjct:  350 VAASARDAVAKALYSSLFDWLVEKINLTLTAAMNSKTAAN-TSNKFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEEEFAKQGLSKVYVEHCRVEFADNDDVLRLLEGKPQGILSLLKEESTLKTGTGLKLGKRYRQAFKGNDRFALPRARGGNRAGTEATFGIVHFAGEVIYDATEFVEKNKDEVPTALHDLVLSSNDR 560          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: A0A835YVE9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVE9_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.930e-71
Identity = 134/209 (64.11%), Postives = 153/209 (73.21%), Query Frame = 1
Query:   13 ARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASN-RFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRDEVPPALHDLVLSSNDR 636
            ARDAVAKA+Y+A F WLV K+ L   A  ++   GD +S+ +FIG+LDIFGFEAFGTNSLEQLLINYANERLQQQFN FVFKLEE+EF  EGLS VYV++CRVE+ DN ++L LLE +P GLLSLL EE+TLK GT   L KRYRQ F     F       G     EA+FGV HFAGEV Y  T FVEKNRD VP AL DLVL S+DR
Sbjct:  424 ARDAVAKAIYAAAFSWLVGKLTLPRCAVCSAY--GDSSSDTQFIGILDIFGFEAFGTNSLEQLLINYANERLQQQFNFFVFKLEEQEFQAEGLSAVYVDECRVEWTDNSEILSLLEAKPMGLLSLLNEEATLKNGTSENLVKRYRQGFDGAPCFCNRMPVRGGATLDEAIFGVRHFAGEVYYTVTGFVEKNRDAVPVALADLVLDSSDR 630          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: A0A7I8K2M4_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K2M4_SPIIN)

HSP 1 Score: 174 bits (440), Expect = 1.930e-46
Identity = 98/204 (48.04%), Postives = 127/204 (62.25%), Query Frame = 1
Query:   16 RDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRDEVPPALHDLVLSS 627
            RDA+AK+LYS LFDWLVE+IN +L         G + + R I +LDI+GFE+F  NS EQ  INYANERLQQ FN  +FKLE++E+  +G     ++  +V+F DN D L L E +P GLLSLL EEST   GT L L  + +Q    N RF          GG    FGV+H+AGEV+YD++ F+EKNRD +      L+ SS
Sbjct:  505 RDALAKSLYSGLFDWLVEQINKSLKV-------GKQGTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYVQDG-----IDWAKVDFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLHSNSRFT---------GGRGKSFGVIHYAGEVVYDASGFLEKNRDPLHLDSIQLLASS 687          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: A0A6J0JC03_RAPSA (myosin-1-like n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JC03_RAPSA)

HSP 1 Score: 171 bits (432), Expect = 2.280e-45
Identity = 98/195 (50.26%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    4 AAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRD 588
            A  ARDA+AK++YS LFDWLVE+IN +L         G + + R I +LDI+GFE+F  NS EQ  INYANERLQQ FN  +FKLE++E+  +G     ++  RV+F DN D L L E +P GLLSLL EEST   GT L L  + +Q    N  F         +G  E LF VVH+AGEV YD+T F+EKNRD
Sbjct:  477 AIDARDALAKSVYSCLFDWLVEQINKSLAV-------GKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDG-----IDWTRVDFEDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLHSNSCF---------RGDREKLFTVVHYAGEVTYDTTGFLEKNRD 650          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: A0A3P5ZIY6_BRACM (Uncharacterized protein n=3 Tax=Brassica TaxID=3705 RepID=A0A3P5ZIY6_BRACM)

HSP 1 Score: 171 bits (432), Expect = 2.300e-45
Identity = 98/195 (50.26%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    4 AAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRD 588
            A  ARDA+AK++YS LFDWLVE+IN +L         G + + R I +LDI+GFE+F  NS EQ  INYANERLQQ FN  +FKLE++E+  +G     ++  RV+F DN D L L E +P GLLSLL EEST   GT L L  + +Q    N  F         +G  E LF VVH+AGEV YD+T F+EKNRD
Sbjct:  523 AIDARDALAKSVYSCLFDWLVEQINKSLAV-------GKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDG-----IDWTRVDFEDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLHSNSCF---------RGDREKLFTVVHYAGEVTYDTTGFLEKNRD 696          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: A0A078GIZ4_BRANA (BnaA05g19230D protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=A0A078GIZ4_BRANA)

HSP 1 Score: 171 bits (432), Expect = 2.370e-45
Identity = 98/195 (50.26%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    4 AAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRD 588
            A  ARDA+AK++YS LFDWLVE+IN +L         G + + R I +LDI+GFE+F  NS EQ  INYANERLQQ FN  +FKLE++E+  +G     ++  RV+F DN D L L E +P GLLSLL EEST   GT L L  + +Q    N  F         +G  E LF VVH+AGEV YD+T F+EKNRD
Sbjct:  464 AIDARDALAKSVYSCLFDWLVEQINKSLAV-------GKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDG-----IDWTRVDFEDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLHSNSCF---------RGDREKLFTVVHYAGEVTYDTTGFLEKNRD 637          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: M4F434_BRARP (Uncharacterized protein n=12 Tax=Brassica TaxID=3705 RepID=M4F434_BRARP)

HSP 1 Score: 170 bits (431), Expect = 3.110e-45
Identity = 98/195 (50.26%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    4 AAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRD 588
            A  ARDA+AK++YS LFDWLVE+IN +L         G + + R I +LDI+GFE+F  NS EQ  INYANERLQQ FN  +FKLE++E+  +G     ++  RV+F DN D L L E +P GLLSLL EEST   GT L L  + +Q    N  F         +G  E LF VVH+AGEV YD+T F+EKNRD
Sbjct:  470 AIDARDALAKSVYSCLFDWLVEQINKSLAV-------GKRRTGRSISILDIYGFESFEKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDG-----IDWTRVDFEDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLHSNSCF---------RGDREKLFTVVHYAGEVTYDTTGFLEKNRD 643          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: A0A3N6Q3J8_BRACR (Uncharacterized protein n=3 Tax=Brassica TaxID=3705 RepID=A0A3N6Q3J8_BRACR)

HSP 1 Score: 170 bits (431), Expect = 3.110e-45
Identity = 98/195 (50.26%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    4 AAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRD 588
            A  ARDA+AK++YS LFDWLVE+IN +L         G + + R I +LDI+GFE+F  NS EQ  INYANERLQQ FN  +FKLE++E+  +G     ++  RV+F DN D L L E +P GLLSLL EEST   GT L L  + +Q    N  F         +G  E LF VVH+AGEV YD+T F+EKNRD
Sbjct:  483 AIDARDALAKSVYSCLFDWLVEQINESLAV-------GKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDG-----IDWTRVDFEDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLHSNSCF---------RGDREKLFTVVHYAGEVTYDTTGFLEKNRD 656          
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Match: A0A7J9CT76_GOSGO (Myosin motor domain-containing protein n=2 Tax=Gossypium gossypioides TaxID=34282 RepID=A0A7J9CT76_GOSGO)

HSP 1 Score: 160 bits (404), Expect = 8.010e-45
Identity = 91/195 (46.67%), Postives = 119/195 (61.03%), Query Frame = 1
Query:    4 AAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLLDIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVYVEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQTFAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRD 588
            A + RDA+AK++Y+ LF+WLVE+IN +L         G + + R I +LDI+GFE+F  NS EQ  INYANERLQQ FN  +FKLE++E+  +G     ++  +V+F DN D L L E +P GLLSLL EEST   GT      + +Q    N  F         +G  E  F V HFAGEV YD+T F+EKNRD
Sbjct:   69 AIETRDALAKSIYAGLFEWLVEQINKSLAV-------GKRLTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDG-----IDWAKVDFDDNQDCLHLFEKKPLGLLSLLNEESTFPNGTDYTFANKLKQHLNSNPCF---------KGEREKAFTVSHFAGEVTYDTTGFLEKNRD 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11799.1145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN04_ECTSI2.640e-11886.32Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JIF4_9PHAE2.660e-11186.32Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A835YVE9_9STRA1.930e-7164.11P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7I8K2M4_SPIIN1.930e-4648.04Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A6J0JC03_RAPSA2.280e-4550.26myosin-1-like n=2 Tax=Raphanus sativus TaxID=3726 ... [more]
A0A3P5ZIY6_BRACM2.300e-4550.26Uncharacterized protein n=3 Tax=Brassica TaxID=370... [more]
A0A078GIZ4_BRANA2.370e-4550.26BnaA05g19230D protein n=2 Tax=Magnoliopsida TaxID=... [more]
M4F434_BRARP3.110e-4550.26Uncharacterized protein n=12 Tax=Brassica TaxID=37... [more]
A0A3N6Q3J8_BRACR3.110e-4550.26Uncharacterized protein n=3 Tax=Brassica TaxID=370... [more]
A0A7J9CT76_GOSGO8.010e-4546.67Myosin motor domain-containing protein n=2 Tax=Gos... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11799contigH-paniculata_contig11799:560..3625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.5
Seed ortholog evalue1.4e-97
Seed eggNOG ortholog2880.D8LN04
KEGG koko:K10357,ko:K10359,ko:K21868
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko03036,ko04131,ko04812
Exons4
Model size639
Cds size639
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11799.1145.1prot_H-paniculata_contig11799.1145.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11799 560..3625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928889.3290937-CDS-H-paniculata_contig11799:559..6931622928889.3290937-CDS-H-paniculata_contig11799:559..693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11799 560..693 +
1691480657.750964-CDS-H-paniculata_contig11799:559..6931691480657.750964-CDS-H-paniculata_contig11799:559..693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11799 560..693 +
1622928889.34426-CDS-H-paniculata_contig11799:963..11231622928889.34426-CDS-H-paniculata_contig11799:963..1123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11799 964..1123 +
1691480657.760485-CDS-H-paniculata_contig11799:963..11231691480657.760485-CDS-H-paniculata_contig11799:963..1123Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11799 964..1123 +
1622928889.3615456-CDS-H-paniculata_contig11799:2334..25221622928889.3615456-CDS-H-paniculata_contig11799:2334..2522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11799 2335..2522 +
1691480657.767775-CDS-H-paniculata_contig11799:2334..25221691480657.767775-CDS-H-paniculata_contig11799:2334..2522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11799 2335..2522 +
1622928889.381133-CDS-H-paniculata_contig11799:3468..36251622928889.381133-CDS-H-paniculata_contig11799:3468..3625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11799 3469..3625 +
1691480657.775139-CDS-H-paniculata_contig11799:3468..36251691480657.775139-CDS-H-paniculata_contig11799:3468..3625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11799 3469..3625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11799.1145.1

>prot_H-paniculata_contig11799.1145.1 ID=prot_H-paniculata_contig11799.1145.1|Name=mRNA_H-paniculata_contig11799.1145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
VAAQARDAVAKALYSALFDWLVEKINLTLTAAMNSKTTGDKASNRFIGLL
DIFGFEAFGTNSLEQLLINYANERLQQQFNAFVFKLEEKEFSTEGLSRVY
VEQCRVEFADNDDVLRLLEGRPSGLLSLLKEESTLKTGTGLRLGKRYRQT
FAKNDRFAVPRARGGNQGGTEALFGVVHFAGEVIYDSTEFVEKNRDEVPP
ALHDLVLSSNDR*
back to top

mRNA from alignment at H-paniculata_contig11799:560..3625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11799.1145.1 ID=mRNA_H-paniculata_contig11799.1145.1|Name=mRNA_H-paniculata_contig11799.1145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3066bp|location=Sequence derived from alignment at H-paniculata_contig11799:560..3625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCGGCGCAAGCCCGGGATGCCGTGGCGAAGGCTCTCTACTCTGCGCT TTTCGACTGGCTCGTGGAGAAGATCAACCTGACACTCACCGCCGCTATGA ACTCTAAGACCACCGGGGACAAGGCCAGCAACAGGTGTGCTTTCAACCCC GTACATCCTGGAGGTGCACTTTTGTGGTCGTCCTCGATCCACAAACTTGC TGGGCTTGTAGTGGAAGGTCGCGTAGGTAAATAACACTAGCTGTGCCCGG AAGGGGTATTCCCTACGTTCGTAAGAAAATTATTTTTCGGGTGAGTTACT TGAGTACAGAGTTGGAAATATGTTGTGAAACGACAAGCAGAATGATCAAC TAGGTCCCTATCCATCTTTTTGAACAATTTAGTTGCACAAAAACGAACCC TCAGGTTTATCGGATTGCTGGACATTTTCGGATTTGAGGCGTTCGGCACG AACTCTCTTGAGCAGCTCCTGATCAACTACGCGAACGAGAGGCTGCAGCA ACAATTCAACGCTTTTGTCTTCAAGCTCGAAGAGAAGGAATTCTCTACGG AGGGGCTCAGCCGTGTAAGTGCTACTGAGTGAAGAGGCCTGTTCGAGTGT CGTGTAACAGTGGGTTCCCCCATCCACGCGAAATTAAGTCGTCATAAAAC CAAAGAACATGCCACCTTGAATCGAACACCATCTCGCGATCATCACTAGG GAGCACTTTTTGGGGCCCAAATAATGAAATCGGAAAACTGGAAATGTGGG GGGTGGAATGTAATACGAGCCGAAATTCCCCTATTTCGAATGTCCTCAAA CAGGATTGATTTCTGTTGATTTGACTAAACATTTTGGGTTCGATCTCCAT TTTGAATAGTGAAGTATGGTTGCTTTTTTTTTTTTTTTTAATCTCTTTTC ACATTCACTCCAATTCGAATTGATAGTTTGGGGCTGAGCGACCAGGTTAT CGTGAACAATTTTCGTGATTCCTATAGCCGTCGTAACCGTCGGCTCAGTA TAGTGTTGATGGTTTGGGGACTCTCCCCTGTGTTGTCCAGGCCTAAAGAC TTGTATGCGTTATTATCGTTCGCGCAGCTCCAAAAGAGTGAGTGAGCAGA GGCTGCTGTTCCAAAGACATAGCCCAGCATAAAGACAACAAAAAACATGC CAACAAATCAACCATTCTGACGCGGAACTGTCAGACCAAACCAAATTATG GCAATAGATCAAGAAAACATCCCGGGTCAATCATGTCCCTCCGAAGCCTA CTATTACACCGCTTTTGTCCCTTCGACTTAGTACTGTACACCCAGCTGCG GCCACAGCTTGATGCCGGGTGGGTTAAAATTTTTAACGAGCGGCGATCCG CAAAAAATTGGTTCAAGAAGAAATCGAATCAAAACCTATTTAATGGCATG CGTTTTCGCATCTCCCCAAGGGTGGGGATGCATAATGTACGATTCGGAAT GATCATACTGTTTTCAAGGGGAATATAGATGTTTTTGCCTGGCCTCCTTT GCGAATCGGCTTCAAAAGTACACCCGCCACTTCTTGCGTAGCCCGAGTCA TTCCTGTATTGCCTGAAATCATCGTTTCCGCCCAAGACATGCTTCGCTAG CAATGACCCTTGCCTATATTCGACATGTCTCGTTCCGTATGACAATTATT TGTTGTTGGAATATTGTCGAACTCTCTCCGGGTTGTTCATTGTATGAGGT TCAGGCATCCCCCGCCCCCGCCCCTCCCCCGTGTGCGTGCCCCCATTCTC GAAAAAAAATGCCATCCCTCTGCAGGTTTATGTGGAGCAATGCCGAGTGG AATTCGCCGATAACGACGATGTTCTCCGGCTGTTGGAGGGGAGACCGAGC GGTCTGCTGTCCCTGCTTAAAGAGGAGTCCACGCTCAAGACGGGCACGGG ACTGAGGCTGGGCAAGCGGTACAGACAGACGTTCGCCAAGAATGACCGCT TCGCCGTGCCCAGGTATCTGCCAGTATGTATGTAGTGTTGTTGAATGCGC AAACGTGATGTTGCTGGGGGGTTGAGGGTGTCGTATGCCGCTATTCTACC TATGGTTGGAGAGAGGTTTGTGAGTCATGAAGCAGCGCTGGCTCGCCCTG CTAGTTTATTTTTGGCTATTGTTGTGGTCATCGTCATTTTGTAGGCGACT TTTTCTTTTTTTTTTCACGTGTAGAGTATGACTTGTAATAGAGGGTTGAA GAATATCCAAGATTAAATCAAGCGTGCGGATAAAATTGGAATTATTATAC TCGAGGGATTTTGCGATGATTTTTTTGTTTAGCGAGTAATTCCATGAAAT TTCCGCATAAGGTGCTTTATGTTATGTTTCCCGGGCTGTGTATGACTGCT TTTGGTACAATTTGAACTGAGCGAAACAGCGCCCAGTATTCTGTTTCTTT TGTGTACACATTTTGTAAAGACGCAGTATTAGTCTTTTTCCAGGGGGGTA AGACAATTTGTTGGATAAAGCTGACAGACGGTTGGTTCGGCGTCTATCCT CGGAACAAGATACAAGAAAATCAGAGTTTTCAGCGACAGCAGTCAAAAAG TGTTGAGCTCCAAGGCTGACTTGAACCGTTTTGTCGGATAGAAAAAGGGA CTCGTGAAACGGGCAGAGGATGGGGGGGGGAGGGGGTTCATGATATTATT TATGATATACCCTTGTCATAGATTAAAATAACGCGGTGAATTTAGACTGC AACGTTGCGCGAGTTGGACTAGACTCGTTCATCTTATGGCGATTTTCACC ATTTTTTTTCAGTATACGCGAACAAAATTTTACATGTGTCAGCCATAGAT TATATGCCTGCCCCTTCGGCAGTAGATAATTGAAGAGATTCGGGTCGTTT ATTCATCCTTTCACGAGTCTAAACTTGTTCACACTGATCGTTTTTTCGGT TACACCCAGGGCTCGGGGTGGGAACCAGGGGGGCACTGAGGCGCTATTCG GAGTTGTACACTTTGCCGGAGAAGTTATCTATGACTCCACGGAATTCGTC GAGAAGAACAGGGATGAGGTTCCGCCAGCGCTGCACGACCTCGTGCTCAG CAGCAACGACAGGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11799:560..3625+

>mRNA_H-paniculata_contig11799.1145.1 ID=mRNA_H-paniculata_contig11799.1145.1|Name=mRNA_H-paniculata_contig11799.1145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig11799:560..3625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCGGCGCAAGCCCGGGATGCCGTGGCGAAGGCTCTCTACTCTGCGCT
TTTCGACTGGCTCGTGGAGAAGATCAACCTGACACTCACCGCCGCTATGA
ACTCTAAGACCACCGGGGACAAGGCCAGCAACAGGTAGCGGCGCAAGCCC
GGGATGCCGTGGCGAAGGCTCTCTACTCTGCGCTTTTCGACTGGCTCGTG
GAGAAGATCAACCTGACACTCACCGCCGCTATGAACTCTAAGACCACCGG
GGACAAGGCCAGCAACAGGTTTATCGGATTGCTGGACATTTTCGGATTTG
AGGCGTTCGGCACGAACTCTCTTGAGCAGCTCCTGATCAACTACGCGAAC
GAGAGGCTGCAGCAACAATTCAACGCTTTTGTCTTCAAGCTCGAAGAGAA
GGAATTCTCTACGGAGGGGCTCAGCCGTGTTTATCGGATTGCTGGACATT
TTCGGATTTGAGGCGTTCGGCACGAACTCTCTTGAGCAGCTCCTGATCAA
CTACGCGAACGAGAGGCTGCAGCAACAATTCAACGCTTTTGTCTTCAAGC
TCGAAGAGAAGGAATTCTCTACGGAGGGGCTCAGCCGTGTTTATGTGGAG
CAATGCCGAGTGGAATTCGCCGATAACGACGATGTTCTCCGGCTGTTGGA
GGGGAGACCGAGCGGTCTGCTGTCCCTGCTTAAAGAGGAGTCCACGCTCA
AGACGGGCACGGGACTGAGGCTGGGCAAGCGGTACAGACAGACGTTCGCC
AAGAATGACCGCTTCGCCGTGCCCAGGTTTATGTGGAGCAATGCCGAGTG
GAATTCGCCGATAACGACGATGTTCTCCGGCTGTTGGAGGGGAGACCGAG
CGGTCTGCTGTCCCTGCTTAAAGAGGAGTCCACGCTCAAGACGGGCACGG
GACTGAGGCTGGGCAAGCGGTACAGACAGACGTTCGCCAAGAATGACCGC
TTCGCCGTGCCCAGGGCTCGGGGTGGGAACCAGGGGGGCACTGAGGCGCT
ATTCGGAGTTGTACACTTTGCCGGAGAAGTTATCTATGACTCCACGGAAT
TCGTCGAGAAGAACAGGGATGAGGTTCCGCCAGCGCTGCACGACCTCGTG
CTCAGCAGCAACGACAGGTAAGGCTCGGGGTGGGAACCAGGGGGGCACTG
AGGCGCTATTCGGAGTTGTACACTTTGCCGGAGAAGTTATCTATGACTCC
ACGGAATTCGTCGAGAAGAACAGGGATGAGGTTCCGCCAGCGCTGCACGA
CCTCGTGCTCAGCAGCAACGACAGGTAA
back to top